rna5584, rna5584 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5584
Unique Name	rna5584
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2570
Alignment location	CM002466.1:343238..345451 +

Link to JBrowse

Properties


Property Name	Value
Product	trans-2-enoyl- reductase
Orig transcript id	gnl\|cribi\|Naga_100016g22.2944.mrna
Orig protein id	gnl\|cribi\|Naga_100016g22.2944
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:343238..345451 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g22	gene5396	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5584	rna5584-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25135.1	cds5570	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:343238..345451+
coding sequence from alignment at CM002466.1:343238..345451+

mRNA sequence

>rna5584 ID=rna5584|Name=rna5584|organism=Nannochloropsis gaditana|type=mRNA|length=2570bp
TGGATGTAGGGAGATGCCCCAAGAAAGTGAGCTTGATTGATAAGGAGAAT
CATGATGTTTGTCGATTACGGTCCTGGACGTGTCGCTCACGCGTGACAGG
CAGCGGATGGTCCCGAGCGGGCAGATGTTTCAATCATGAATAAATACAAA
CACTGTACACGTGGCATGCCTATTCCACCAAAGTAATCTTTACGCCGCAA
AGAGATGAGGCGGAGCCTGGTGCACGGCGATGGAGACGGCGAGGATCCTG
GGCGCAGATAGGTATTGAGTTTTTCCATCGCTCGTCTTGGCCCCTGCGCG
CCTCGCTCCTTCCTCTTCCTCCGTCTTGCCGCCTGCAGAACACGGCGCAT
TTCATGCTTTTGGGGAAGCCTTCAATCTTGTTTCACGGACGACCCACGTG
CCGAATGAGGACGTGACCGGGTAGCGTGTGGGGGAGCTACCGGTGATGTC
CGCGTCCGCGATACTCAGCTTTTCAGGGGATTGCCGAGATTCGCGACCGC
TCATCACACGAAGGTATCATCGACGCGCCGTTCGTATGTCTCTTCGCGGC
TTATATCTATCCGCGTGGGGCTGCGGGCACTTGTTTCAGTCACTATCGAG
CACGTTAAGTTGACGGTGTGCTTTCGAAACCAGATACTGCAAAGCAATGA
AACAATTAGTATTGGAGCGTTTGATGGGACCAAGTGGAAGCTGAACGGGA
GGAGCGGCTGTGTGGGGTTGGACAAGTGCTTTGTGTCATGGGCTAAAACC
GCTCGTCTTCCTAGCCATATAATGATCTTGTTAGCTCTCGTGCACGCTGT
ACTTTGTATTTTGGTTGCAATGCAATTGTAACCGTATAACACCACTTTGT
TCTCGTCGGAGTCAATCGAAATCGCAGCTTCCTCGCCCTGTCGTTCTCAC
GGGTTTCGGTATATATGTACTTATCTATGAAGCCCGGGGTGTACATGTCT
TCTCACAAGTTTCATTTCCCTTCAATACTTGCCATGCAGACACATCTTGC
GATTTGGCCTCTTCCACCTCCCCTCGTCGCATCGTATGGTCAAAGTGCTG
CCTTTCAAAGCCTACCGGCCCCCGGCCGCTCTGGCAAGCACAGTAGCTGC
CCCTCCTTACGACGTTATCTCCTCTGATGAGGCCCGTAGATTGGCGGATG
GCAAAGAGGACAGCTTTTTGCGCGTAAACAAACCAGAGATCGACTTGCCT
GCAAGTCTATCCTCTTATGACTTGCGGGTATACGAACGCGGCGCAAAAAA
TCTCAAGGAGTTCATCTCCCGAGGCTGGCTTCGCAAAGAAGCAGCCCCCG
CGTACTATATTTATTCCCAACGGATGGGTGATCACATTCAGCATGGGATA
TGCGGTGCATGTTCTGTGGAAGAGTACGCGACGGGGGTGATCAAACGCCA
CGAGAAGACGCAGGTGAAGAAGGAGAACGACCGGACCCGCCTGACCTACA
CGCAGAACGCCAACGTGGGGCCCGTCTTCCTCATGTACAAGCCCCACGAC
GCGCTGGACGAGATCGTGCGCACGGTCACAAGCACGCGTCCGGCGGAGAC
GTCGTTCGTGGCGGATGACGACGGCATTGAGCACTTGGTCTGGCTCGTGA
ACGACGAGCCTACGGTCAGCTCCATCCGCAGGGCTTTCGAGAGTATTCGC
TTCTCGTACATCGCCGACGGCCACCACCGCTCTGCCTCAGCGTTCCGCGT
GGGAGAGATGAAAATCAAAGAGGCGATTGCGGCGGGCAAGAACGTGACGG
GGGACGAGTCTTTCTGCCTCTTCTTGGCTGTCCTCTTCCCTGCCAACCAG
CTGAAGATACTAGAGTACAACCGTATTGTGAAGGACCTCAACGGCTTGAC
GGAGGATGAATTTTTGAGCAAAGTGATGGAGAACTTTGAGGTGTCGAAAT
CGGGAGGGGAAGAAGTGAAGCCAGACGAGGGGGCCGGCAATGGAGGAGAG
CCGCGTCCAGGAGGCAACAAGATCGTCCGACCAACGGTGAAAGGGGAGGT
GGGTATGTGTCTGCGGGGGACCTGGTATCGGCTAAAGGCGCGGGAGGCTT
CGGTCCCCAAGCACGACCCTGTGAACTCGCTGGACGTGCAAGTAGTCTAC
AACCACGTGCTTAAGGCGGTGCTGAACATCGGGGACCCCCGGGAAGACGA
GCGGATGAAGTACGTGGGAGGCGTGCGAGGTCTGGAGGAGCTGGAGCGGC
TTGTGACAGGAGAGAGGGCCTGGGGGGCCGTGGCCTTCGCCATGTATCCC
GTGTCGGTGGAGGAGGTTATGGACATCGCGGATGCAGAAGCCCTCATGCC
CCCAAAAGCAACCTGGTTCGAACCCAAACTACGATCGGGCTTGATCGTGA
GGTTGTACGACGACTCGTAAAGGAGACAGAGGGATGAATGTGATAAGTGA
GAGATTTGTCAGTCGCCATGCGTTGACCAACCAGAGTACACCGAGCTTGA
CAAACAGATCAGTCACACTAGGAAATGGAAATGCGCGATTTAGGTAAAAC
ACGCAAAATTTAAGAAACCAACCGCAAACAATGCACATGAAAAAGAAAAT
TTGCACAAGGAAAGATTACA

protein sequence of rna5584

>rna5584-protein ID=rna5584-protein|Name=rna5584|organism=Nannochloropsis gaditana|type=polypeptide|length=350bp
MILLINQAHFLGASPYIQEQYPSMASSRLVMASLLGRKGPARLRPPGATV
AAACRGLSTAAGALADNEVALSILAAPVTAMDVGKKNPTGVEGVGVVTAV
GSKVRGFAVHDWAVPTSGSVPTFCSAAKAKENELAKVPSDIPVEFAACMG
TALTALRLLAGLKKGDFVLQADADSPVGLAVVQIAQARGVGTINIVVDGP
GFWDKISLIKDLGGDVVVSDTYAREDPGFSSIMGELPKPTLALAATEAGV
ALASKCGGGAKVVNHNTGGSGLLKASAAEIEAAAGLFRSEALQLWVERHP
YSDLSVALKEAAEPFKTRRVVLVMSEVPKPQVDEAKLREDFEKLFQRLRA

mRNA from alignment at CM002466.1:343238..345451+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5584 ID=rna5584|Name=rna5584|organism=Nannochloropsis gaditana|type=mRNA|length=2214bp|location=Sequence derived from alignment at CM002466.1:343238..345451+ (Nannochloropsis gaditana)
CGTAAAGATTACTTTGGTGGAATAGGCATGCCACGTGTACAGTGTTTGTA
TTTATTCATGATTGAAACATCTGCCCGCTCGGGACCATCCGCTGCCTGTC
ACGCGTGAGCGACACGTCCAGGACCGTAATCGACAAACATCATGATTCTC
CTTATCAATCAAGCTCACTTTCTTGGGGCATCTCCCTACATCCAGGAGCA
GTACCCATCCATGGCGTCGTCCCGCCTGGTAATGGCCTCATTGCTGGGGC
GGAAAGGGCCTGCACGCCTGAGACCACCCGGGGCTACGGTCGCTGCTGCT
TGCCGAGGCCTGTCAACAGCTGCGGGCGCTTTGGCGGACAACGAGGTGGC
TCTCAGCATCTTGGCAGCGCCTGTGACTGCCATGGACGTTGGGAAGAAAA
ATCCAACCGGAGTGGAAGGTGTGGGTGTCGTGACCGCGGTTGGCAGCAAG
GTACGGGGATTTGCCGTCCATGACTGGGCGGTGCCGACGTCGGGATCCGT
GCCAACTTTTTGCagcgccgccaaggccaaggaAAATGAACTGGCCAAGG
TACCCTCTGACATCCCCGTGGAGTTTGCTGCATGCATGGGGACGGCATTA
ACGGCGCTCCGGCTTCTTGCTGGCCTCAAGAAGGGAGACTTTGTGCTACA
AGCGGACGCGGACTCGCCCGTGGGATTGGCGGTGGTGCAGATTGCGCAGG
CGCGCGGCGTAGGCACCATCAACATCGTGGTGGATGGGCCGGGTTTCTGG
GACAAGATCAGTCTCATCAAGGACTtggggggggacgtggtTGTGAGCGA
CACTTacgcgagggaggacccCGGCTTTTCCAGCATCATGGGGGAATTGC
CGAAGCCGACGCTGGCTCTGGCAGCCAcagaggcgggcgtggctttGGCC
AGCAagtgtgggggaggcgcgaaAGTGGTCAACCATAACACAGGAGGGTC
GGGCCTGCTGAAGGCGTCGGCGGCAGAGATCGAGGCCGCGGCTGGGCTTT
TCCGATCGGAGGCATTGCAGCTGTGGGTGGAGAGGCACCCCTACTCGGAC
CTATCCGTGGCCCTGAAAGAGGCCGCCGAGCCCTTCAAGACACGGAGGGT
CGTGCTGGTAATGAGCGAAGTCCCCAAGCCccaggtggacgaggccaagc
TCCGGGAGGATTTCGAAAAGCTCTTCCAAAGACTGCGGGCGTGAGGCTGA
AGGCGCCGGAGCAGGAAATGAGATGTGACTGTGCCGTGTTGACATGGGGT
GCCCCGATTGTGggtgaagggcgaggaaaggcggcggagagCCAGGATGG
ACCCGGAGGGTCTCAGGCGCCGGGGACGATCGATGAGCATTTGTCAGAAG
ATGGACTCTGAGTTGAAAATAGAAAATTGGAGGACATTTGGAACATCGAT
GGGATCACAGATTTTGGCTGGGAGGCATTGCTTGCCGTGGGGGGGACGGG
CAAATGAGATATTGAGGTAGGAAGAAGCATGAGGGCTATCGCCGCGGATG
ATGTTGCTATGTTGGTCAGGCTTTTAAGCCATTAAACTACGAGCTTCCAC
ACATCCTTCCCACCGCGTTCTTTTTCTGGCTAGACAGTCATgatctcttt
ctccttcgacTTGAGCATCTCATCAAGTTGCTTCCCATACTTATCAGTCA
GCTTCTgcagcgcctcctgcccATTAGCGCTCTCGTCCTTCCCGATGGTT
TTGTCCTTCTCCAACTTCTTCACTCTCTCCACGGCGTCCCGTCGCACGTT
CCGCACGgccactttcccctcctccgccaggcccTTGGCCATCTTGCTca
gctccttcctcctgtcctccgtGAGGGGGGGAATGTTCAAGCGCAAAACG
CTTCCCTCGTTGTTCGGATTGAGACCCAGACTTGATTCTAGGATGGCGGT
TTCGATTAGCTTGAAGGCGCATTTGTCGTAAGGAGAGACCACCAAAGACT
GCGGGCCCGAGACAGAGACACCGGCAAGCTGATTTAAGGGCGTCGGGGAG
CCGAAGTAGTCGACCATCACTCGGTCAAGGAGGGTGACACTGGGGAAAAA
GGGTTACAGAGATCCTTAATGTGAGTACTCCGAAGACTATGACCCAAAGT
CTCGTACCAGacgttgaagaggaggctctACACGGCACGTGGCGCCAACA
GACTAACTTACGATGCCCGACCGGTGCGAATGCCCTTGAGGTTGTTATCG
GTTGAAtccacgct

Coding sequence (CDS) from alignment at CM002466.1:343238..345451+

>rna5584 ID=rna5584|Name=rna5584|organism=Nannochloropsis gaditana|type=CDS|length=1053bp|location=Sequence derived from alignment at CM002466.1:343238..345451+ (Nannochloropsis gaditana)
ATGATTCTCCTTATCAATCAAGCTCACTTTCTTGGGGCATCTCCCTACAT
CCAGGAGCAGTACCCATCCATGGCGTCGTCCCGCCTGGTAATGGCCTCAT
TGCTGGGGCGGAAAGGGCCTGCACGCCTGAGACCACCCGGGGCTACGGTC
GCTGCTGCTTGCCGAGGCCTGTCAACAGCTGCGGGCGCTTTGGCGGACAA
CGAGGTGGCTCTCAGCATCTTGGCAGCGCCTGTGACTGCCATGGACGTTG
GGAAGAAAAATCCAACCGGAGTGGAAGGTGTGGGTGTCGTGACCGCGGTT
GGCAGCAAGGTACGGGGATTTGCCGTCCATGACTGGGCGGTGCCGACGTC
GGGATCCGTGCCAACTTTTTGCagcgccgccaaggccaaggaAAATGAAC
TGGCCAAGGTACCCTCTGACATCCCCGTGGAGTTTGCTGCATGCATGGGG
ACGGCATTAACGGCGCTCCGGCTTCTTGCTGGCCTCAAGAAGGGAGACTT
TGTGCTACAAGCGGACGCGGACTCGCCCGTGGGATTGGCGGTGGTGCAGA
TTGCGCAGGCGCGCGGCGTAGGCACCATCAACATCGTGGTGGATGGGCCG
GGTTTCTGGGACAAGATCAGTCTCATCAAGGACTtggggggggacgtggt
TGTGAGCGACACTTacgcgagggaggacccCGGCTTTTCCAGCATCATGG
GGGAATTGCCGAAGCCGACGCTGGCTCTGGCAGCCAcagaggcgggcgtg
gctttGGCCAGCAagtgtgggggaggcgcgaaAGTGGTCAACCATAACAC
AGGAGGGTCGGGCCTGCTGAAGGCGTCGGCGGCAGAGATCGAGGCCGCGG
CTGGGCTTTTCCGATCGGAGGCATTGCAGCTGTGGGTGGAGAGGCACCCC
TACTCGGACCTATCCGTGGCCCTGAAAGAGGCCGCCGAGCCCTTCAAGAC
ACGGAGGGTCGTGCTGGTAATGAGCGAAGTCCCCAAGCCccaggtggacg
aggccaagcTCCGGGAGGATTTCGAAAAGCTCTTCCAAAGACTGCGGGCG
TGA

Synonyms

Publications