rna5582, rna5582 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5582
Unique Name	rna5582
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1490
Alignment location	CM002466.1:337371..340868 +

Link to JBrowse

Properties


Property Name	Value
Product	f-type h-atpase beta subunit
Orig transcript id	gnl\|cribi\|Naga_100016g24.2951.mrna
Orig protein id	gnl\|cribi\|Naga_100016g24.2951
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:337371..340868 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g24	gene5394	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5582	rna5582-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25142.1	cds5568	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:337371..340868+
coding sequence from alignment at CM002466.1:337371..340868+

mRNA sequence

>rna5582 ID=rna5582|Name=rna5582|organism=Nannochloropsis gaditana|type=mRNA|length=1490bp
GCCACACGCCCTCCTTCACGCCATCAGGCTACTTTTCTTCTGTTGGCGCT
CGGGCCGAACTAACCACCGCTTAATGTGCGGGCAGGAGCCAATTCATTTA
TCAAAAATGTCGTCACGCAGCAATAATTTACATTGATCGCTGCCTCTTCT
TTTGGGGTACTTTTTGAGTTTATTTGTCGTGGTCTCCAGCCTTTTACGGA
TACCCCATTCTCATCTTCACTCTTCCTTTACAATTATTTATAACAGCAGC
CTTCGGGGTCTGCAAGCAGAAATGGCCGAGACCGCTGCTTCGATACCTCA
GATTTCTCGTCTTGAGTACGGGAGGGATCCAGAGGGCAAGGAGCTTCTCG
TAATGCGTACCTTGCAGTCCCACGAAAGAGGGAAGAAGCACGCAGGCATG
GAAAGGAGTGGGAAGCCAAGGGATGACGATGGTATCGTACCTGCTCCGGA
GGCACTACAACCTTATCTGGGCACGAATACTATAGTGATGATGGAGTGGG
AGAAAGAATACATGGAAAAGCTGGTTGAAGCCTTGAATGTCCAGGCTGAT
GATGAGGTCTTGGAAATCGGGTGGGGTCTGGGTTACTCTGCAGCGGCCAT
TCAAAGACGTCGGCCGCGGCGCCACGTGATAATCGAGTGTGACACTGGAG
TCCTGGAGCGGGCTAAGCTTTGGAAGGAGAGCGTGGAACACAGTTGGAGA
AAAGAGGACCAAAGCGCCAGGAAGGAAAGTGGAAGCCACAATGAAGGTCG
TCCTGAAGAGGGAGAGTCTAACAAGAAGCAACAGACCAGGGAAACAGACA
GCTTTGAGAGGTGTATCGTCCTAGTGCACGCCTTTTGGCAGCAAGCCTTG
CCATCTATGGATATGTTTACCGCAGTTCTCATGGACGACTTCCCCCTCCC
CCTCCTGGGTCCGGAGGCGGAGAACGAGTCGCGTGTTCTGGCTTCGACGG
GGGGCTCTCGCTGGCATCATTTCTTGGACCTCGTAGTCAGTTACCATCTG
CGTCCTGGCGGGCGTGTAACAGGTTACCTTAGTCGTGATCTGGACTTATG
TCGTGCGGATTGTACCTACACACGGTGTCCCGTCGAGGTGGTGGTTCCAA
CTAATTGTAATTACGCGACACCGGGACGTCAAACCTACTTTGTGCCGTTG
TTGACACGAAATCGAATAGGTGGAGAACACCAGAGGGGCGAGGAGGTAGG
CGTTGCTGTGGGTTGCTCGCACATCATTACTGGAAGGGCAAGAGGCGATG
CAGCGATTACTGCTGAGTGCTATCAAAATAAAAGGAGAAAGGAAGATGAA
TGGGATGAGATTGACACACCTTACATGTGTAAAGCTGCTCGAAAAAGACG
ATGCATGCTAAGACATCTCCTCGAAGCCCAGAAATGTTGAGAAAAATCAG
TTCTGTAGTCCATTAGTAAGTAGCATGGCGGACAAAAGCATGTAAATGCC
ACACATGTAAAGAATGTAAACATCAACAACAGCTCACCCC

protein sequence of rna5582

>rna5582-protein ID=rna5582-protein|Name=rna5582|organism=Nannochloropsis gaditana|type=polypeptide|length=666bp
MSEAAEAPVKDGRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVL
EVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNV
IGEPIDEKGPIKAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYS
KGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLY
HEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEY
FRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTL
QERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAEL
GIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILG
MDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFT
EILRGTYDDIPEQAFYMVGNIKDVQEKATKLAKSLEKETKSSAAAAAAAL
QYSLGGQADMLSKGMEQYGIKNDKSASQLQAEIEPFTVPPSLISGFDSVP
GVGSELSEAEIKEKFTEAYKALTPEQQAEAKNYAKAFLSKDWKQYIDPSV
EHSASADKDEWPWAGPDPLPEKYLKQDIPEEWMVEPPKEWWLVKHPKWVA
KFGKDYAEKYVPANYR

mRNA from alignment at CM002466.1:337371..340868+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5582 ID=rna5582|Name=rna5582|organism=Nannochloropsis gaditana|type=mRNA|length=3498bp|location=Sequence derived from alignment at CM002466.1:337371..340868+ (Nannochloropsis gaditana)
CAAGCCGTCAATACATCACTTGCGTGCGTCTTTGCGATCGTTTGACACTG
GTGGTTCTGTTCGTACATGACCATTTATTTGCTGCTGACCCACGTGCTGC
TGGTTGGCTGGCGGGCGGTGTGCCCTTCTCCGTCTGGCAACGCCCGCCGG
CCCCCCCTAGTCATCATGCATCTTCTCGACCCGCGTGCTTTACGCCTAGG
ATGGACGTCATTGTCCCATGTACCTGCCGCCTCTCAAAAAACAGTGTCTG
TACTTTTCGATTTATTCGTTCTTGGGCGTGATGTATGGTCGTAAGTCACG
GTACGAAGACGACAAGTGTAAGGGGACGCACGAGGACGAGCAAAGCTTTG
GCTtggccccctctccttgtctctTAATTAGTTGCGTCCTTGCACAACAA
CCAACACAAACTCGTGTAGTTGACACACTATTGAATAAGagttggaagag
gatggtgcGATTTCAGGATTTTGGCATCTAGTAGACCTACAAGCGACATG
CTCTTCAATGCATTTGGGAGTGGCAGAGTGCTCAAGACAAGCTGTCTTCC
AGAAATCCATACCACACCCTCACTTACGTGCCCCCTACTTGAAAACACTT
TTAGGATGGCGTTTGCTGCAAGCCGAATGCTCAAGAGAGGCCTGACCTCC
TTCAAGGGGATCGCCCGCGCTTCCACACCTGCTGCATTTTGTAAGTTGGG
CGGGATGCTCGACAGGTCCAGGAGCTTGCACGTCGGACAGTGTCTGCAAG
CCTGCTCTCTGAGGCCATGTCATTAGAGTATACTTTGTGCGAGAAAAATT
TTCGAGGCTGACATCCTGAATCGGCCCACTTTTCCCGGCATTGACAAAAA
CAGCGCGGCGATGGATGTCAGAAGCGGCCGAGGCCCCAGTCAAGGATGGC
CGTGTGCTGCAAGTCATCGGTGCTGTCGTTGACGTGGAGTTTGACGACAA
ACTGCCTCGTGTTCTTAACGCCCTTGAGGTGCAGGTAGAAAAGGGCCGCC
CCCgcctggtgctggaggtggcgcAACACATCGGAGAGCGCGTGGTCCGC
ACTATTGCCATGGACGCCACTGAAGGCTTAGTTCGCGGACAACCTGTGAA
AGACCAGGGAGACGCCATTCAGGTGCCGGTGGGTCCGGGTACGCTAGGCC
GCATCGTGAACGTGATTGGTGAACCCATCGACGAGAAGGGTCCCATTAAA
GCGGCTGCGCACTGGTCTATCCACCGCCCGGCCCCCCTCCTGACCGAGCA
GGGTGAGTCCGATGCTATCCTCTCTACGGGCATCAAGGTCATTGACTTGA
TCGGCCCGTACTCCAAGGGCGGAAAGATTGGCCTCTTCGGCGGGGCAGGT
GTGGGGAAGACGGTCGTGATCATGGAGCTGATCAACAACGTGGCCATGAA
CCACGGTGGCTTCTCTGTCTTtgcgggcgtgggcgagcGGACTCGCGAGG
GAAACGATTTGTACCATGAAATGATGACGTCCGGTGTCATCAAGATCGAT
AAGAACACCGGATCCACGGAGGGCTCCAAAGCCGCCCTTGTGTACGGCCA
GATGAACGAGCCGCCCGGGGCCCGCGCCCGTGTCGCCCTGACGGGGTTGA
CGATCGCTGAGTACTTCCGTGATGTGGAAGGGCAAGACGTGTTGCTCTTC
GTCGACAACATTTTCCGCTTCACCCAGGCCGGTGCCGAGGTGTCGGCCCT
CTTGGGCCGCATCCCCTCTGCTGTCGGATACCAGCCCACGCTTGCCACGG
ACATGGGAACGTTGCAGGAGCGCATTACCTCGACGCTCAAAGGGTCTATT
ACTTCCGTGCAGGCCGTGTACGTGCCCGCTGATGACTTGACGGACCCTGC
TCCCGCGACGACCTTCGCCCATCTGGACGCCACCACTGTGCTGTCCCGCA
AGATCGCCGAGTTGGGCATCTACCCCGCCGTGGACCCCCTGGACTCGTCG
TCTCGTCTGATGGACCCCGAGTACGTGTCCATGGAGCACTACAAGACCAC
GCGCGACACCCAGAAGCTGCTTCAGGATTACAAGTCTCTCCAGGATATCA
TCGCCATTCTGGGGATGGACGAGCtctccgaggaggacaaaCTGACTGTG
GCTCGTGCCCGCAAGGCGCAGCGTTTCATGTCCCAGCCCTTCCACGTCGC
TGAGGTCTTCACCGGTTTCTCGGGCAAGTTTGTGCCTTTGGAGGAGTCTA
TCTCCGGCTTCACGGAGATCCTCCGCGGTACCTACGATGACATCCCTGAG
CAAGCCTTCTACATGGTGGGTAACATCAAGGATGTGCAGGAGAAGGCCAC
GAAACTGGCCAAGTctttggagaaggagaccaAGAGCTCTGCCGCAGCGG
CAGCTGCTGCCCTCCAGTACTCTCTCGGAGGCCAGGCGGACATGTTGAGC
AAGGGCATGGAGCAGTACGGCATCAAGAACGATAAATCTGCTTCCCAGCT
CCAGGCCGAGATCGAGCCCTTCacagtccctccctctcttatTTCCGGAT
TCGATTCCGTCCCCGGTGTAGGATCCGAATTGTCGGAGGCAGAGATTAAG
GAGAAGTTCACGGAGGCCTACAAAGCTCTCACCCCCGAGCAGCAGGCGGA
AGCCAAGAACTACGCCAAGGCCTTCCTGAGCAAGGACTGGAAGCAATACA
TCGACCCCTCCGTGGAGCATTCGGCGTCCGCAGACAAGGACGAGTGGCCA
TGGGCCGGGCCGGACCCCCTGCCGGAGAAGTACCTCAAGCAGGACATCCC
CGAAGAGTGGATGGTGGAGCCCCCCAAGGAGTGGTGGCTGGTCAAGCACC
CCAAGTGGGTCGCCAAGTTCGGAAAGGACTACGCGGAGAAGTACGTCCCG
GCCAACTACCGGtaaagagggcggggggcgttggagagaaaaagggggag
cTTGTGCCCGTCTCGGGCGCCGCGCTAGCCGGTGGAAGACTGCGGGAGCG
AAGGATAAAGATAGACGAAGAACGCGACTGACAGTGAGATGGGCACCACC
CTGTGAGATGGTGAGGTGGTGGAAAAGTGCTTGACAGGCGTGGGGTAGTG
TCAGGGAAAGCGGACGAAAGCTCAAAGCGAGGCTGCGAGCTGAGCTCATG
TGTAGTGTACGTCTTTCCTTTTTACCCCTGTTCTAATAAGGCATTAGTGG
TAATGGTCTGGGGTCGTAAGACATTATATTCGTAGAGAAAACAAAGATGG
TGACGTACCAAAACAGGAGCGGGGGTATTGAAAATTGTGTGCGTTTAGAT
GTTTGGATTTGAGTGCCCGTAGAGCTTCATGAGGTAACGCGGGTCCTATC
TCATCGTATTGGCTGATGTGTGACAATTTGATGCGGAAGATGCGAAATCT
TTTAACGTCCTAGAGCTGTTCGTGCGTCACGACGGCCAATATGCGGTGTA
CAACACCGAGAGAAAGCGAACCGCTTGCCAGAAAGAAAAAGTCTTGGCCA
GGAGCCACGGAGGCAGCCCTCTGATTGGGAAGTAGCGTCTATGTAATC

Coding sequence (CDS) from alignment at CM002466.1:337371..340868+

>rna5582 ID=rna5582|Name=rna5582|organism=Nannochloropsis gaditana|type=CDS|length=2001bp|location=Sequence derived from alignment at CM002466.1:337371..340868+ (Nannochloropsis gaditana)
ATGTCAGAAGCGGCCGAGGCCCCAGTCAAGGATGGCCGTGTGCTGCAAGT
CATCGGTGCTGTCGTTGACGTGGAGTTTGACGACAAACTGCCTCGTGTTC
TTAACGCCCTTGAGGTGCAGGTAGAAAAGGGCCGCCCCCgcctggtgctg
gaggtggcgcAACACATCGGAGAGCGCGTGGTCCGCACTATTGCCATGGA
CGCCACTGAAGGCTTAGTTCGCGGACAACCTGTGAAAGACCAGGGAGACG
CCATTCAGGTGCCGGTGGGTCCGGGTACGCTAGGCCGCATCGTGAACGTG
ATTGGTGAACCCATCGACGAGAAGGGTCCCATTAAAGCGGCTGCGCACTG
GTCTATCCACCGCCCGGCCCCCCTCCTGACCGAGCAGGGTGAGTCCGATG
CTATCCTCTCTACGGGCATCAAGGTCATTGACTTGATCGGCCCGTACTCC
AAGGGCGGAAAGATTGGCCTCTTCGGCGGGGCAGGTGTGGGGAAGACGGT
CGTGATCATGGAGCTGATCAACAACGTGGCCATGAACCACGGTGGCTTCT
CTGTCTTtgcgggcgtgggcgagcGGACTCGCGAGGGAAACGATTTGTAC
CATGAAATGATGACGTCCGGTGTCATCAAGATCGATAAGAACACCGGATC
CACGGAGGGCTCCAAAGCCGCCCTTGTGTACGGCCAGATGAACGAGCCGC
CCGGGGCCCGCGCCCGTGTCGCCCTGACGGGGTTGACGATCGCTGAGTAC
TTCCGTGATGTGGAAGGGCAAGACGTGTTGCTCTTCGTCGACAACATTTT
CCGCTTCACCCAGGCCGGTGCCGAGGTGTCGGCCCTCTTGGGCCGCATCC
CCTCTGCTGTCGGATACCAGCCCACGCTTGCCACGGACATGGGAACGTTG
CAGGAGCGCATTACCTCGACGCTCAAAGGGTCTATTACTTCCGTGCAGGC
CGTGTACGTGCCCGCTGATGACTTGACGGACCCTGCTCCCGCGACGACCT
TCGCCCATCTGGACGCCACCACTGTGCTGTCCCGCAAGATCGCCGAGTTG
GGCATCTACCCCGCCGTGGACCCCCTGGACTCGTCGTCTCGTCTGATGGA
CCCCGAGTACGTGTCCATGGAGCACTACAAGACCACGCGCGACACCCAGA
AGCTGCTTCAGGATTACAAGTCTCTCCAGGATATCATCGCCATTCTGGGG
ATGGACGAGCtctccgaggaggacaaaCTGACTGTGGCTCGTGCCCGCAA
GGCGCAGCGTTTCATGTCCCAGCCCTTCCACGTCGCTGAGGTCTTCACCG
GTTTCTCGGGCAAGTTTGTGCCTTTGGAGGAGTCTATCTCCGGCTTCACG
GAGATCCTCCGCGGTACCTACGATGACATCCCTGAGCAAGCCTTCTACAT
GGTGGGTAACATCAAGGATGTGCAGGAGAAGGCCACGAAACTGGCCAAGT
ctttggagaaggagaccaAGAGCTCTGCCGCAGCGGCAGCTGCTGCCCTC
CAGTACTCTCTCGGAGGCCAGGCGGACATGTTGAGCAAGGGCATGGAGCA
GTACGGCATCAAGAACGATAAATCTGCTTCCCAGCTCCAGGCCGAGATCG
AGCCCTTCacagtccctccctctcttatTTCCGGATTCGATTCCGTCCCC
GGTGTAGGATCCGAATTGTCGGAGGCAGAGATTAAGGAGAAGTTCACGGA
GGCCTACAAAGCTCTCACCCCCGAGCAGCAGGCGGAAGCCAAGAACTACG
CCAAGGCCTTCCTGAGCAAGGACTGGAAGCAATACATCGACCCCTCCGTG
GAGCATTCGGCGTCCGCAGACAAGGACGAGTGGCCATGGGCCGGGCCGGA
CCCCCTGCCGGAGAAGTACCTCAAGCAGGACATCCCCGAAGAGTGGATGG
TGGAGCCCCCCAAGGAGTGGTGGCTGGTCAAGCACCCCAAGTGGGTCGCC
AAGTTCGGAAAGGACTACGCGGAGAAGTACGTCCCGGCCAACTACCGGta
a

Synonyms

Publications