EWM25142.1, cds5568 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25142.1
Unique Name	cds5568
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:338235..340235 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25142.1
Product	f-type h-atpase beta subunit
Orig transcript id	gnl\|cribi\|Naga_100016g24.2951.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:338235..340235 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity
GO:0005215	transporter activity
GO:0016740	transferase activity
GO:0000166	nucleotide binding
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0006139	nucleobase-containing compound metabolic process
GO:0009058	biosynthetic process
GO:0006091	generation of precursor metabolites and energy
GO:0015986	ATP synthesis coupled proton transport
GO:0046034	ATP metabolic process
GO:0015991	ATP hydrolysis coupled proton transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion
GO:0016020	membrane
GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain

Vocabulary: **INTERPRO**
Term	Definition
IPR020003	ATPase_a/bsu_AS
IPR005722	ATPase_F1-cplx_bsu
IPR024034	ATPase_F1_bsu/V1_C
IPR004100	ATPase_F1_a/bsu_N
IPR027417	P-loop_NTPase
IPR000793	ATPase_F1/V1/A1-cplx_a/bsu_C
IPR000194	ATPase_F1/V1/A1_a/bsu_nucl-bd
IPR003593	AAA+_ATPase

Homology

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BLAST of EWM25142.1 vs. NCBI_GenBank
Match: gi|553196248|ref|XP_005856300.1| (F-type H+-transporting ATPase subunit beta, partial [Nannochloropsis gaditana CCMP526] >gi|422292778|gb|EKU20080.1| F-type H+-transporting ATPase subunit beta, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1357.81 bits (3513), Expect = 0.000e+0
Identity = 666/666 (100.00%), Postives = 666/666 (100.00%), Query Frame = 0

Query:    1 MSEAAEAPVKDGRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPIKAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKLAKSLEKETKSSAAAAAAALQYSLGGQADMLSKGMEQYGIKNDKSASQLQAEIEPFTVPPSLISGFDSVPGVGSELSEAEIKEKFTEAYKALTPEQQAEAKNYAKAFLSKDWKQYIDPSVEHSASADKDEWPWAGPDPLPEKYLKQDIPEEWMVEPPKEWWLVKHPKWVAKFGKDYAEKYVPANYR 666
            MSEAAEAPVKDGRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPIKAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKLAKSLEKETKSSAAAAAAALQYSLGGQADMLSKGMEQYGIKNDKSASQLQAEIEPFTVPPSLISGFDSVPGVGSELSEAEIKEKFTEAYKALTPEQQAEAKNYAKAFLSKDWKQYIDPSVEHSASADKDEWPWAGPDPLPEKYLKQDIPEEWMVEPPKEWWLVKHPKWVAKFGKDYAEKYVPANYR
Sbjct:   38 MSEAAEAPVKDGRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPIKAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKLAKSLEKETKSSAAAAAAALQYSLGGQADMLSKGMEQYGIKNDKSASQLQAEIEPFTVPPSLISGFDSVPGVGSELSEAEIKEKFTEAYKALTPEQQAEAKNYAKAFLSKDWKQYIDPSVEHSASADKDEWPWAGPDPLPEKYLKQDIPEEWMVEPPKEWWLVKHPKWVAKFGKDYAEKYVPANYR 703

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BLAST of EWM25142.1 vs. NCBI_GenBank
Match: gi|585106780|gb|EWM25142.1| (f-type h-atpase beta subunit [Nannochloropsis gaditana])

HSP 1 Score: 1355.89 bits (3508), Expect = 0.000e+0
Identity = 666/666 (100.00%), Postives = 666/666 (100.00%), Query Frame = 0

Query:    1 MSEAAEAPVKDGRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPIKAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKLAKSLEKETKSSAAAAAAALQYSLGGQADMLSKGMEQYGIKNDKSASQLQAEIEPFTVPPSLISGFDSVPGVGSELSEAEIKEKFTEAYKALTPEQQAEAKNYAKAFLSKDWKQYIDPSVEHSASADKDEWPWAGPDPLPEKYLKQDIPEEWMVEPPKEWWLVKHPKWVAKFGKDYAEKYVPANYR 666
            MSEAAEAPVKDGRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPIKAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKLAKSLEKETKSSAAAAAAALQYSLGGQADMLSKGMEQYGIKNDKSASQLQAEIEPFTVPPSLISGFDSVPGVGSELSEAEIKEKFTEAYKALTPEQQAEAKNYAKAFLSKDWKQYIDPSVEHSASADKDEWPWAGPDPLPEKYLKQDIPEEWMVEPPKEWWLVKHPKWVAKFGKDYAEKYVPANYR
Sbjct:    1 MSEAAEAPVKDGRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPIKAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKLAKSLEKETKSSAAAAAAALQYSLGGQADMLSKGMEQYGIKNDKSASQLQAEIEPFTVPPSLISGFDSVPGVGSELSEAEIKEKFTEAYKALTPEQQAEAKNYAKAFLSKDWKQYIDPSVEHSASADKDEWPWAGPDPLPEKYLKQDIPEEWMVEPPKEWWLVKHPKWVAKFGKDYAEKYVPANYR 666

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BLAST of EWM25142.1 vs. NCBI_GenBank
Match: gi|1210515311|dbj|GAX25763.1| (F-type H+-transporting ATPase subunit beta [Fistulifera solaris] >gi|1210525765|dbj|GAX15371.1| F-type H+-transporting ATPase subunit beta [Fistulifera solaris])

HSP 1 Score: 771.155 bits (1990), Expect = 0.000e+0
Identity = 377/475 (79.37%), Postives = 419/475 (88.21%), Query Frame = 0

Query:   12 GRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPI---KAAAHWS-IHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKLA 482
            G+V QVIGAVVDV+FDDKLP++LNALEV+V KG  RLVLEVAQH+GE  VRTIAM++T+GLVRGQ   D G  IQVPVGP TLGRI+NVIGEP+DEKGPI   KA+  ++ +HR AP   EQG +  IL TGIKV+DL+ PY+KGGKIGLFGGAGVGKTVVIMELINN+AMNHGG+SVFAGVGERTREGNDLY+EM+  GVIKID+ TGST GSKAALVYGQMNEPPGARARVALTGL IAEYFRD EGQDVLLFVDNIFRFTQAG+EVSALLGRIPSAVGYQPTLATDMG LQERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDS+SR++DP  +   HY   R TQKLLQDYK LQDIIAILGMDELSE+DKLTVARARK Q+FMSQPFHVAEVFTG +GKFV LE++I+GF+EI+ G YD +PE AFYMVGNI+DV+ KA+ +A
Sbjct:   25 GKVTQVIGAVVDVQFDDKLPKILNALEVEVPKGSERLVLEVAQHLGENTVRTIAMESTDGLVRGQKCVDTGAPIQVPVGPDTLGRIINVIGEPVDEKGPIFKDKASEKFAPLHRSAPTFNEQGRTQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAMNHGGYSVFAGVGERTREGNDLYYEMIEGGVIKIDEKTGSTAGSKAALVYGQMNEPPGARARVALTGLAIAEYFRDEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPRVIGQRHYDVARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQKFMSQPFHVAEVFTGTAGKFVSLEDTINGFSEIISGAYDSLPEGAFYMVGNIEDVKAKASTMA 499

[Close]

BLAST of EWM25142.1 vs. NCBI_GenBank
Match: gi|219112331|ref|XP_002177917.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410802|gb|EEC50731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 770.77 bits (1989), Expect = 0.000e+0
Identity = 376/475 (79.16%), Postives = 419/475 (88.21%), Query Frame = 0

Query:   12 GRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPI----KAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKLA 482
            G+V QVIGAVVDV+FD+KLP++LNALEV+V  G  RLVLEVAQH+GE  VRTIAM++T+GLVRGQ   D G  IQVPVGP TLGRI+NVIGEP+DEKGPI    +A  +  +HR AP  TEQG S  IL TGIKV+DL+ PY+KGGKIGLFGGAGVGKTVVIMELINN+AMNHGG+SVFAGVGERTREGNDLY+EM+  GVIKID+ TGST GSKAALVYGQMNEPPGARARVALTGL IAEYFRD EGQDVLLFVDNIFRFTQAG+EVSALLGRIPSAVGYQPTLATDMG LQERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDS+SR++DP  +   HY   R TQKLLQDYKSLQDIIAILGMDELSE+DKLTV+RARK Q+FMSQPFHVAEVFTG +GKFV LE++I GF++I+ G YDD+PE AFYMVG+I+DV+EKA ++A
Sbjct:   26 GKVTQVIGAVVDVQFDEKLPKILNALEVEVVAGAERLVLEVAQHLGENTVRTIAMESTDGLVRGQKCVDTGAPIQVPVGPDTLGRIINVIGEPVDEKGPIFLSKEAEKYAPLHRAAPTFTEQGRSQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAMNHGGYSVFAGVGERTREGNDLYYEMIEGGVIKIDEKTGSTAGSKAALVYGQMNEPPGARARVALTGLAIAEYFRDEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPRVIGQRHYDVARSTQKLLQDYKSLQDIIAILGMDELSEDDKLTVSRARKVQKFMSQPFHVAEVFTGTAGKFVSLEKTIDGFSQIINGDYDDLPEGAFYMVGDIEDVKEKAGQMA 500

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BLAST of EWM25142.1 vs. NCBI_GenBank
Match: gi|1072236012|gb|OEU20740.1| (F-type H-ATPase beta subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 768.459 bits (1983), Expect = 0.000e+0
Identity = 378/484 (78.10%), Postives = 416/484 (85.95%), Query Frame = 0

Query:    2 SEAAEAPVKDGRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPI----KAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKL 481
            S    A +  G+V  VIGAVVDV+F DKLP++LNALEV+V +G  RLVLEVAQH+GE  VRTIAM++T+GLVRGQ   D G  IQVPVGP TLGRI+NVIGEP+DEKGPI    K A +  +HR AP  TEQG S  IL TGIKV+DL+ PY+KGGKIGLFGGAGVGKTVVIMELINN+AMNHGG+SVFAGVGERTREGNDLYHEM+  GVIKID+ +GSTEGSKAALVYGQMNEPPGARARVALTGL IAEYFRD EGQDVLLFVDNIFRFTQAG+EVSALLGRIPSAVGYQPTLATDMG LQERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDS+SR++DP  +  EHY+  R TQKLLQDYK LQDIIAILGMDELSE+DKLTV+RARK  +FMSQPFHVAEVFTG +GKFV LE+SI GF EI+ G YD +PE AFYMVG I DV+EKA  +
Sbjct:   17 SSTTAAALNTGKVTTVIGAVVDVQFPDKLPKILNALEVEVAEGNERLVLEVAQHLGENTVRTIAMESTDGLVRGQKCVDSGAPIQVPVGPLTLGRIINVIGEPVDEKGPIFPDKKIAKYAPLHRSAPTFTEQGRSQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAMNHGGYSVFAGVGERTREGNDLYHEMIEGGVIKIDEASGSTEGSKAALVYGQMNEPPGARARVALTGLAIAEYFRDEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGGLQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPRVIGNEHYEVARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVSRARKVMKFMSQPFHVAEVFTGTAGKFVSLEDSIKGFKEIISGDYDHLPELAFYMVGGIDDVKEKAANM 500

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BLAST of EWM25142.1 vs. NCBI_GenBank
Match: gi|224004780|ref|XP_002296041.1| (F-type H-ATPase beta subunit [Thalassiosira pseudonana CCMP1335] >gi|209586073|gb|ACI64758.1| F-type H-ATPase beta subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 762.681 bits (1968), Expect = 0.000e+0
Identity = 376/486 (77.37%), Postives = 417/486 (85.80%), Query Frame = 0

Query:    1 MSEAAEAPVKDGRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPI----KAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKLA 482
             S +A      GRV QVIGAVVDV+FD+KLP++LNALEV  E    RLVLEVAQH+GE  VRTIAM++T+GLVRGQ   D G  IQVPVGP TLGRI+NVIGEP+DEKGPI    K      +HR AP  TEQG+S  IL TGIKV+DL+ PY+KGGKIGLFGGAGVGKTVVIMELINN+AMNHGG+SVFAGVGERTREGNDLYHEM+  GVIKI+K+TGSTEGSKAALVYGQMNEPPGARARVALTGL IAEYFRD EGQDVLLFVDNIFRFTQAG+EVSALLGRIPSAVGYQPTLATDMG LQERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDS+SR++DP  +  +HY+  R TQKLLQDYK LQDIIAILGMDELSE+DKL V+RARK Q+FMSQPFHVAEVFTG +GKFV LE++I GF EI+ G +DD+PE AFYMVG+I +V+ KA  +A
Sbjct:   16 FSGSAAVSASVGRVTQVIGAVVDVQFDEKLPKILNALEV--ETTGDRLVLEVAQHLGENTVRTIAMESTDGLVRGQKCTDTGAPIQVPVGPETLGRIINVIGEPVDEKGPIFTDKKMEKFAPLHRSAPTFTEQGKSQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAMNHGGYSVFAGVGERTREGNDLYHEMIEGGVIKINKDTGSTEGSKAALVYGQMNEPPGARARVALTGLAIAEYFRDEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGGLQERITSTAKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRMLDPRVIGDKHYQVARATQKLLQDYKGLQDIIAILGMDELSEDDKLVVSRARKVQKFMSQPFHVAEVFTGTAGKFVSLEDTIKGFEEIINGEHDDLPEGAFYMVGDINEVKSKAATMA 499

[Close]

BLAST of EWM25142.1 vs. NCBI_GenBank
Match: gi|298710991|emb|CBJ32298.1| (F-type H-ATPase beta subunit [Ectocarpus siliculosus])

HSP 1 Score: 750.355 bits (1936), Expect = 0.000e+0
Identity = 372/473 (78.65%), Postives = 404/473 (85.41%), Query Frame = 0

Query:   12 GRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPIKAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKLAKS 484
            GRV QVIGAVVDV+FD  LP + NALEV V  G  RLVLEVAQH+GE  VRTIAM+ATEGL RGQ   D G  I VPVG  TLGRI+NVIGEP+DE+GPI + A   IH  AP   EQG+S  IL TGIKV+DL+ PY+KGGKIGLFGGAGVGKTVVIMELINN+A NHGGFSVFAGVGERTREGNDLYHEM+  GVIKI ++  ST+GSKA LVYGQMNEPPGARARVALTGLTIAEYFRD EGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMG LQERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR+IAELGIYPAVDPLDS+SR++DP  +  EHY+T R TQKLLQDYK LQ+IIAILGMDELSE+DKLTVARARK QRFMSQPF VAEVFTG  G FV LE++I GF EIL G +DD+PE AFYMVG+I  V  KA +LA+S
Sbjct:   36 GRVTQVIGAVVDVQFDKDLPPIFNALEVNVADGASRLVLEVAQHLGENTVRTIAMEATEGLTRGQGCTDTGAPIMVPVGQETLGRIMNVIGEPVDERGPINSKAKAPIHNSAPTFEEQGKSQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIATNHGGFSVFAGVGERTREGNDLYHEMIEGGVIKITED--STKGSKATLVYGQMNEPPGARARVALTGLTIAEYFRDAEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGMLQERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQEIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYMVGDIASVGVKAKQLAES 506

[Close]

BLAST of EWM25142.1 vs. NCBI_GenBank
Match: gi|1173954873|gb|OQS02009.1| (F-type H-ATPase beta subunit [Thraustotheca clavata])

HSP 1 Score: 743.806 bits (1919), Expect = 0.000e+0
Identity = 361/476 (75.84%), Postives = 408/476 (85.71%), Query Frame = 0

Query:   12 GRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPIKAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKLAKSLEK 487
            GR+ Q+IGAVVDV+F + LP +LNALEVQ      R+VLEVAQH+GE  VRTIAM+ T+GLVRGQ   D G+ I VPVGP TLGRI+NVIGEP+DE+GPI +A    IH  APL TEQG    +L TG+KV+DL+ PY+KGGKIGLFGGAGVGKTVVIMELINNVA NHGG SVFAGVGERTREGNDLYHEM+ SGVIK++ + G+T GSKAALVYGQMNEPPGARARV LTGLT+AEYFRDVEGQDVLLFVDNIFRFTQA +EVSALLGRIPSAVGYQPTLATD+G LQERITSTLKGSITSVQA+YVPADDLTDPAPATTF+HLDATTVLSR+I+ELGIYPAVDPLDS SR++DP  +  EHY+  R TQKLLQDYK LQDIIAILGMDELSE+DKLTVARARK Q+FMSQP HVAEVFTG  GKFV L E++S F  IL G YDD+PE AF+MVG I++V+EKA +LA  L++
Sbjct:   20 GRITQIIGAVVDVQFTNNLPPILNALEVQNTNDNVRIVLEVAQHLGENTVRTIAMEGTDGLVRGQECVDTGNPIMVPVGPETLGRIMNVIGEPVDERGPINSATKAPIHCAAPLYTEQGSGAEVLVTGLKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNVANNHGGVSVFAGVGERTREGNDLYHEMIESGVIKLNAD-GTTTGSKAALVYGQMNEPPGARARVGLTGLTVAEYFRDVEGQDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDLGALQERITSTLKGSITSVQAIYVPADDLTDPAPATTFSHLDATTVLSRQISELGIYPAVDPLDSKSRMLDPRVIGDEHYEVARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQKFMSQPLHVAEVFTGKPGKFVALAETVSSFKAILAGEYDDLPEAAFFMVGGIEEVKEKAKQLASELDE 494

[Close]

BLAST of EWM25142.1 vs. NCBI_GenBank
Match: gi|1173932452|gb|OQR84423.1| (F-type H-ATPase beta subunit [Achlya hypogyna])

HSP 1 Score: 743.421 bits (1918), Expect = 0.000e+0
Identity = 361/476 (75.84%), Postives = 407/476 (85.50%), Query Frame = 0

Query:   12 GRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPIKAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKLAKSLEK 487
            GR+ Q+IGAVVDV+F + LP +LNALEVQ      R+VLEVAQH+GE  VRTIAM+ T+GLVRGQ   D G+ I VPVGP TLGRI+NVIGEP+DE+GPI +A    IH  APL TEQG    +L TG+KV+DL+ PY+KGGKIGLFGGAGVGKTVVIMELINNVA NHGG SVFAGVGERTREGNDLYHEM+ SGVIK++ + G+T GSKAALVYGQMNEPPGARARV LTGLT+AEYFRDVEGQDVLLFVDNIFRFTQA +EVSALLGRIPSAVGYQPTLATD+G LQERITSTLKGSITSVQA+YVPADDLTDPAPATTF+HLDATTVLSR+I+ELGIYPAVDPLDS SR++DP  +  EHY+  R TQKLLQDYK LQDIIAILGMDELSE+DKLTVARARK Q+FMSQP HVAEVFTG  GKFV L E++S F  IL G YDD+PE AF+MVG I++V+EKA  LA  L++
Sbjct:   20 GRITQIIGAVVDVQFTNNLPPILNALEVQNTNDNVRIVLEVAQHLGENTVRTIAMEGTDGLVRGQECVDTGNPIMVPVGPETLGRIMNVIGEPVDERGPINSATKAPIHCAAPLYTEQGSGAEVLVTGLKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNVANNHGGVSVFAGVGERTREGNDLYHEMIESGVIKLNAD-GTTTGSKAALVYGQMNEPPGARARVGLTGLTVAEYFRDVEGQDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDLGALQERITSTLKGSITSVQAIYVPADDLTDPAPATTFSHLDATTVLSRQISELGIYPAVDPLDSKSRMLDPRVIGDEHYEVARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQKFMSQPLHVAEVFTGKPGKFVALAETVSSFKAILAGEYDDLPEAAFFMVGGIEEVKEKAKALASELDE 494

[Close]

BLAST of EWM25142.1 vs. NCBI_GenBank
Match: gi|673022652|ref|XP_008865287.1| (ATP synthase subunit beta, mitochondrial, partial [Aphanomyces invadans] >gi|673055050|ref|XP_008881485.1| ATP synthase subunit beta, mitochondrial [Aphanomyces invadans] >gi|574462606|gb|ETV89883.1| ATP synthase subunit beta, mitochondrial [Aphanomyces invadans] >gi|574478515|gb|ETW05510.1| ATP synthase subunit beta, mitochondrial, partial [Aphanomyces invadans])

HSP 1 Score: 743.036 bits (1917), Expect = 0.000e+0
Identity = 362/475 (76.21%), Postives = 406/475 (85.47%), Query Frame = 0

Query:   12 GRVLQVIGAVVDVEFDDKLPRVLNALEVQVEKGRPRLVLEVAQHIGERVVRTIAMDATEGLVRGQPVKDQGDAIQVPVGPGTLGRIVNVIGEPIDEKGPIKAAAHWSIHRPAPLLTEQGESDAILSTGIKVIDLIGPYSKGGKIGLFGGAGVGKTVVIMELINNVAMNHGGFSVFAGVGERTREGNDLYHEMMTSGVIKIDKNTGSTEGSKAALVYGQMNEPPGARARVALTGLTIAEYFRDVEGQDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGTLQERITSTLKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSSSRLMDPEYVSMEHYKTTRDTQKLLQDYKSLQDIIAILGMDELSEEDKLTVARARKAQRFMSQPFHVAEVFTGFSGKFVPLEESISGFTEILRGTYDDIPEQAFYMVGNIKDVQEKATKLAKSLE 486
            GR+ Q+IGAVVDV+F + LP +LNALEVQ      R+VLEVAQH+GE  VRTIAM+ T+GLVRGQ   D G+ I VPVGP TLGRI+NVIGEP+DE+GPI +     IH  APL TEQG    +L TG+KV+DL+ PY+KGGKIGLFGGAGVGKTVVIMELINNVA NHGG SVFAGVGERTREGNDLYHEM+ SGVIK++ + G+T GSKAALVYGQMNEPPGARARV LTGLT+AEYFRDVEGQDVLLFVDNIFRFTQA +EVSALLGRIPSAVGYQPTLATD+G LQERITSTLKGSITSVQA+YVPADDLTDPAPATTF+HLDATTVLSR+I+ELGIYPAVDPLDS SR++DP  +  EHY+  R TQKLLQDYK LQDIIAILGMDELSE+DKLTVARARK Q+FMSQP HVAEVFTG  GKFV LEE++S F  IL G YDD+PE AF+MVG I++V+EKA  LA  LE
Sbjct:   18 GRITQIIGAVVDVQFTNNLPPILNALEVQNTNDNVRIVLEVAQHLGENTVRTIAMEGTDGLVRGQECVDTGNPIMVPVGPETLGRIMNVIGEPVDERGPITSVHKAPIHCAAPLYTEQGSGAEVLVTGLKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNVANNHGGVSVFAGVGERTREGNDLYHEMIESGVIKLNAD-GTTTGSKAALVYGQMNEPPGARARVGLTGLTVAEYFRDVEGQDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDLGALQERITSTLKGSITSVQAIYVPADDLTDPAPATTFSHLDATTVLSRQISELGIYPAVDPLDSKSRMLDPRVIGEEHYEVARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQKFMSQPLHVAEVFTGKPGKFVRLEETVSSFKAILAGEYDDLPEAAFFMVGGIEEVKEKAKALAAELE 491

The following BLAST results are available for this feature:

BLAST of EWM25142.1 vs. NCBI_GenBank

BLAST of EWM25142.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|553196248\|ref\|XP_005856300.1\|	0.000e+0	100.00	F-type H+-transporting ATPase subunit beta, partia...	[more]
gi\|585106780\|gb\|EWM25142.1\|	0.000e+0	100.00	f-type h-atpase beta subunit [Nannochloropsis gadi...	[more]
gi\|1210515311\|dbj\|GAX25763.1\|	0.000e+0	79.37	F-type H+-transporting ATPase subunit beta [Fistul...	[more]
gi\|219112331\|ref\|XP_002177917.1\|	0.000e+0	79.16	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
gi\|1072236012\|gb\|OEU20740.1\|	0.000e+0	78.10	F-type H-ATPase beta subunit [Fragilariopsis cylin...	[more]
gi\|224004780\|ref\|XP_002296041.1\|	0.000e+0	77.37	F-type H-ATPase beta subunit [Thalassiosira pseudo...	[more]
gi\|298710991\|emb\|CBJ32298.1\|	0.000e+0	78.65	F-type H-ATPase beta subunit [Ectocarpus siliculos...	[more]
gi\|1173954873\|gb\|OQS02009.1\|	0.000e+0	75.84	F-type H-ATPase beta subunit [Thraustotheca clavat...	[more]
gi\|1173932452\|gb\|OQR84423.1\|	0.000e+0	75.84	F-type H-ATPase beta subunit [Achlya hypogyna]	[more]
gi\|673022652\|ref\|XP_008865287.1\|	0.000e+0	76.21	ATP synthase subunit beta, mitochondrial, partial ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5582	rna5582	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications