rna5581, rna5581 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5581
Unique Name	rna5581
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2581
Alignment location	CM002466.1:335143..337167 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100016g25.2970.mrna
Orig protein id	gnl\|cribi\|Naga_100016g25.2970
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:335143..337167 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g25	gene5393	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5581	rna5581-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25161.1	cds5567	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:335143..337167+
coding sequence from alignment at CM002466.1:335143..337167+

mRNA sequence

>rna5581 ID=rna5581|Name=rna5581|organism=Nannochloropsis gaditana|type=mRNA|length=2581bp
GGAAACTTTCGAGGCCGAGTCTTAACCCGCGGTGCTCTCATACTCTTGCC
TGTCTTCATAGAGATTCATCGGGGTGCGCGTTGGGAGAATTGGGAAACGG
GTTCATGTCATGTCTGTGATCATCTGCCTGGCTCCATGTCGTTCTTTTGG
CATTCAGGTGTTGGGAGAATCAGATGGCACTTTCAGTCAGAACAGTGTGG
TGTTCTTGTGCTTGACATCAACTGGCAGCCCCAGAATAAAATGGCGCGTT
CGGTTATGAAAACACATGTGTCAGATCTTCTTTCCCCCCCTCTAGTCTGT
GATTACATCATTGTTTGCACGCAGCACGCGTGGCTTGTGTCAGAGTCTTC
CACCTGTGGCGCGCTCAGTGACTGTGACGCCTATGTCTCAGAAGGCATCT
GCTACCGCCAGATCCGCTAGTTGATTCGTTCCGGCCTCAGCTTTGACACG
CGCCTTCTAACACCGCAGCATCCCTCACACTTGCACGGCAGGTCACTCAA
TGCACAAGCCACTCGACAGCATGAACAGCAATGTCCTCCTTGCTCGTGTC
TCCTTACGGGATAATTTGTTGTGTGTCTGTGACCTGAAGGGGGTGATCGT
CTTCGCCTCAGACGACCTCCTGTGGGCGTTGGGGCTTCAGGGGCCAACCA
CGCGCCACATTGGAGCAAGCCTTTTTGATTTGCTCGCCGACGAAGATGTT
GAAGAGTATAAGAATTCACTGCGAAGGAAGTCAGGGTCGCTTCTGAGGTG
CAAGCAAAATGGTTGCTTCGTCTGGCTGGACATTCAATGCGTGTCTCATG
TACCTCCCCAATTAAAGCGCGCTTTGAGTCGAGTACAGAAGGCGCGCGCC
GCTGGGTTCCCCTCTCTCGTGTGCCTTAACAACAATAGCATCAGTGAGAA
TGTGAACCTTATCGCCGACATAAATCGGGCAGTTGCGCCCCACGCTATGA
ATAATAGCCCGCTTAACCACCAGAGCAAGGCCTTGGCCTCCGCCTCGTGT
GCTTGGGCGGCGGGGAATGTCGTCGGCTTGGAGGAAAACGTATTGACCAA
GGATCGCACACTCGATTCCTTCCTTACGCCTGCTGGTCAGGAGGAGGAGA
GCGCAACAAGGCCTGCAGATAAGGCGGTAGGGGAGGAGGACGCGGTAACG
GAAGCCTCGGACCCGGAGGAGGAGGGCATCTACGCCACTCGCGCGGAGCC
GCAGGCCTCGGTCGGTGCAATCAACCCGTGCCTTCCCTCCTTTGGCTGCC
TGACCTTGGAAGACGGTGCGAACCAGGGCCAGCGGGCGACAAGGAGCTTG
TGCACCACAGCGTGTACCACCTCCTCCTCCGTCTCCTCCTCGGAACAGCT
GGGGGACGGCTTGGCGTTGTGGACCGACGAGGAGCAGCTTCGGCAGCAGC
AAGAAGAGGCGGCCATGGTGCGAGAGTATTCTTTCCGGGAAATATTCGAG
TACCTTAGCGCAGGGGCCAAGTCCATGAGTCATGCCACCAGCTTCTCCCT
GAGCGGTTCCCGGGCCTCGTCGACCCTGAACATGGGACCGTCCACAGCAG
CCGCGAGTCCAAGCTCGCCGGCCGCCGTGCTGGCTCAACCATGCCGTGAC
TCTCGACCCTTCAGCGAACGCGTAGCTGCCAAGTGTCGTGCTGCTCCTGA
GGAGAGCTTTCTTTCCAGCCACGGTCTGGCCTCCGGGTCGTCCTCCTGGC
GCCTTCAGAACAAGTACAAGGTCAGCGGGTACATGGGGAAGGCAGCTGCG
ACTCTGGGGTTAGGGACGGTCAAAAGTGCTGCAGTGGGCGCCTCAGCGCT
TCGTCACGTCCCCCCCATGCTGGATGAGAGCGGGTGGGATTGGTATGTGG
ATGTGTGATGCTTCAATATCACAAGACTTCGTACCTGATGGGGAGGGTGT
ATACATGTGTTTGTATTTTAAGTGTCACGTGCATGTTTGCGTCAGTGACA
GTTAAGTGTGTGTTTGTCTCATAGAAAAGTGGACAAAATGGGGAGAGAAT
GAAGATTTAGGCTGCACTAGCGTGACATGAACCATATACAGTGAGAAATG
TGCTAGCGTGGGAACTGCCTCATTTAAACGCAGTCATGCATGGCTCGTAT
CGGCACCTGCACTGTGATATCTATTGAATGTAGGATACAGCAAGACAGAA
TGAGAACTGGAAATGACAGGAGTGAAAACGTCATTAGGACAGCAGAAAAT
GCGCGGATGCGGCAGGCTCCCTCCGAGTGGTGGCTCGGAGTCGTGTGGCC
GCCCGCTGTCGCTGACTGCACCACTGCGCATTTTCCTTTAGACTCACGTA
CAAGGTACAATAGCCAGCAACACATGAAATTCAAGGATCAAAACTTAGAC
TTTCGTCTAAGAGCATCTTGAACGGCGACGTCCAACTACAGTCTGCACGG
CACAGGCAAAGTCTCGATCAGGATTACGAGAAATCCTGATTTAGGAAGAG
ACAACCAAATGATATGGCGCATGTAGTATGAAATTGAGCAGAAAGTCGGC
AAGAAAAGTGTTTTTTACAGGACAACGGGTACGAAGCTCAACAGAATTCT
GAGGCCGTAACCGAAGCTTTTTCTTGCCTCA

protein sequence of rna5581

>rna5581-protein ID=rna5581-protein|Name=rna5581|organism=Nannochloropsis gaditana|type=polypeptide|length=372bp
MAETAASIPQISRLEYGRDPEGKELLVMRTLQSHERGKKHAGMERSGKPR
DDDGIVPAPEALQPYLGTNTIVMMEWEKEYMEKLVEALNVQADDEVLEIG
WGLGYSAAAIQRRRPRRHVIIECDTGVLERAKLWKESVEHSWRKEDQSAR
KESGSHNEGRPEEGESNKKQQTRETDSFERCIVLVHAFWQQALPSMDMFT
AVLMDDFPLPLLGPEAENESRVLASTGGSRWHHFLDLVVSYHLRPGGRVT
GYLSRDLDLCRADCTYTRCPVEVVVPTNCNYATPGRQTYFVPLLTRNRIG
GEHQRGEEVGVAVGCSHIITGRARGDAAITAECYQNKRRKEDEWDEIDTP
YMCKAARKRRCMLRHLLEAQKC

mRNA from alignment at CM002466.1:335143..337167+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5581 ID=rna5581|Name=rna5581|organism=Nannochloropsis gaditana|type=mRNA|length=2025bp|location=Sequence derived from alignment at CM002466.1:335143..337167+ (Nannochloropsis gaditana)
GccacacgccctccttcacgccaTCAGGCTACTTTTCTTCTGTTGGCGCT
CGGGCCGAACTAACCACCGCTTAATGTGCGGGCAGGAGCCAATTCATTTA
TCAAAAATGTCGTCACGCAGCAATAATTTACATTGATCGCTGCCTCTTCT
TTTGGGGTACTTTTTGAGTTTATTTGTCGTGGTCTCCAGCCTTTTACGGA
TACCCCATTCTCATCTTCACTCTTCCTTTACAATTATTTATAACAGCAGC
CTTCGGGGTCTGCAAGCAGAAATGGCCGAGACCGCTGCTTCGATACCTCA
GATTTCTCGTCTTGAGTACGGGAGGGATccagagggcaaggagctTCTCG
TAATGCGTACCTTGCAGTCCcacgaaagagggaagaagcacGCAGGCATG
GAAAGGAGTGGGAAGCCAAGGGATGACGATGGTATCGTACCTGCTCCGGA
GGCACTACAACCTTATCTGGGCACGAATACTATAGTGATGATGGAGTGGG
AGAAAGAATACATGGAAAAGCTGGTTGAAGCCTTGAATGTCCAGGCTGAT
GATGAGGTGCGTAGCTTTCAGGTCGTTAAATACTGGAAAGGGGGCCAAAG
AGCGACAGTACAGGGATTGTAATTCAAAAGATGCGTTTGGCGATGGAAGT
TACTTGCCCCGACAACAAACACACGCGAGCACACATATTTTGTAGCCTAT
CAACATCACGAGTCGTGGAGGGGCGCCGTTGACGCAAGCTACGTGTTGAC
TGGTGAGACTTTTGCCTCAAcacttctttttcttcctctcattTTAAAGG
TCTTGGAAATCGGGTGGGGTCTGGGTTACTCTGCAGCGGCCATTCAAAGA
CGTCGGCCGCGGCGCCACGTGATAATCGAGTGTGACACTGGAGTCCTGGA
GCGGGCTAAGCTTTGGAAGGAGAGCGTGGAACACAGTTGGAGAAAAGAGG
ACCAAAGCGCCAGGAAGGAAAGTGGAAGCCACAATGAAGGTCGTCCTGAA
GAGGGAGAGTCTAACAAGAAGCAACAGACCAGGGAAACAGACAGCTTTGA
GAGGTGTATCGTCCTAGTGCACGCCTTTTGGCAGCAAGCCTTGCCATCTA
TGGATATGTTTACCGCAGTTCTCATGGAcgacttccccctccccctcctg
ggtccggaggcggagaacGAGTCGCGTGTTCTGGCTTCGACGGGGGGCTC
TCGCTGGCATCATTTCTTGGACCTCGTAGTCAGGTGAGGAGACGGGGGCC
GATGCTCGTCTATCTTTTTCGTGAAGGCAGGTGATAAGAAATACAGTGTA
TATCTATTTTTCTATACATCTTCTATTCTTGGGGAGAGAAGATTGGTGTT
GCGGCTTGGAAATGTCGCTTCGTCGAGTTGAAAGGAAACAAGAGCCTTTC
CTCCGGCTCGACCGCGAGACTCGTGTGAAACCATTGACAAGTGGTTCCAC
CAACGCTGACCAGGAAAAACTTTATTCTTGGGCATTTCGGCCTCTCACAC
CTTTCTTTCGTATTCGTCCAATAAGTTACCATCTGCGTCCTGGCGGGCGT
GTAACAGGTTACCTTAGTCGTGATCTGGACTTATGTCGTGCGGATTGTAC
CTACACACGGTGTCCCGTCGAGGTGGTGGTTCCAACTAATTGTAATTACG
CGACACCGGGACGTCAAACCTACTTTGTGCCGTTGTTGACACGAAATCGA
ATAGGTGGAGAACAccagaggggcgaggaggtaggcGTTGCTGTGGGTTG
CTCGCACATCATTActggaagggcaagaggcgATGCAGCGATTACTGCTG
AGTGCTATCAAAataaaaggagaaaggaagatgaATGGGATGAGATTGAC
ACACCTTACATGTGTAAAGCTGCTCGAAAAAGACGATGCATGCTAAGACA
TCTCCTCGAAGCCCAGAAATGTTGAGAAAAATCAGTTCTGTAGTCCATTA
GTAAGTAGCATGGCGGACAAAAGCATGTAAATGCCACACATGTAAAGAAT
GTAAACATCAACAACAGCTCACCCC

Coding sequence (CDS) from alignment at CM002466.1:335143..337167+

>rna5581 ID=rna5581|Name=rna5581|organism=Nannochloropsis gaditana|type=CDS|length=3357bp|location=Sequence derived from alignment at CM002466.1:335143..337167+ (Nannochloropsis gaditana)
ATGGCCGAGACCGCTGCTTCGATACCTCAGATTTCTCGTCTTGAGTACGG
GAGGGATccagagggcaaggagctTCTCGTAATGCGTACCTTGCAGTCCc
acgaaagagggaagaagcacGCAGGCATGGAAAGGAGTGGGAAGCCAAGG
GATGACGATGGTATCGTACCTGCTCCGGAGGCACTACAACCTTATCTGGG
CACGAATACTATAGTGATGATGGAGTGGGAGAAAGAATACATGGAAAAGC
TGGTTGAAGCCTTGAATGTCCAGGCTGATGATGAGGTCTTGGAAATCGGG
TGGGGTCTGGGTTACTCTGCAGCGGCCATTCAAAGACGTCGGCCGCGGCG
CCACGTGATAATCGAGTGTGACACTGGAGTCCTGGAGCGGGCTAAGCTTT
GGAAGGAGAGCGTGGAACACAGTTGGAGAAAAGAGGACCAAAGCGCCAGG
AAGGAAAGTGGAAGCCACAATGAAGGTCGTCCTGAAGAGGGAGAGTCTAA
CAAGAAGCAACAGACCAGGGAAACAGACAGCTTTGAGAGGTGTATCGTCC
TAGTGCACGCCTTTTGGCAGCAAGCCTTGCCATCTATGGATATGTTTACC
GCAGTTCTCATGGAcgacttccccctccccctcctgggtccggaggcgga
gaacGAGTCGCGTGTTCTGGCTTCGACGGGGGGCTCTCGCTGGCATCATT
TCTTGGACCTCGTAGTCAGTTACCATCTGCGTCCTGGCGGGCGTGTAACA
GGTTACCTTAGTCGTGATCTGGACTTATGTCGTGCGGATTGTACCTACAC
ACGGTGTCCCGTCGAGGTGGTGGTTCCAACTAATTGTAATTACGCGACAC
CGGGACGTCAAACCTACTTTGTGCCGTTGTTGACACGAAATCGAATAGGT
GGAGAACAccagaggggcgaggaggtaggcGTTGCTGTGGGTTGCTCGCA
CATCATTActggaagggcaagaggcgATGCAGCGATTACTGCTGAGTGCT
ATCAAAataaaaggagaaaggaagatgaATGGGATGAGATTGACACACCT
TACATGTGTAAAGCTGCTCGAAAAAGACGATGCATGCTAAGACATCTCCT
CGAAGCCCAGAAATGTTGAATGGCCGAGACCGCTGCTTCGATACCTCAGA
TTTCTCGTCTTGAGTACGGGAGGGATccagagggcaaggagctTCTCGTA
ATGCGTACCTTGCAGTCCcacgaaagagggaagaagcacGCAGGCATGGA
AAGGAGTGGGAAGCCAAGGGATGACGATGGTATCGTACCTGCTCCGGAGG
CACTACAACCTTATCTGGGCACGAATACTATAGTGATGATGGAGTGGGAG
AAAGAATACATGGAAAAGCTGGTTGAAGCCTTGAATGTCCAGGCTGATGA
TGAGGTCTTGGAAATCGGGTGGGGTCTGGGTTACTCTGCAGCGGCCATTC
AAAGACGTCGGCCGCGGCGCCACGTGATAATCGAGTGTGACACTGGAGTC
CTGGAGCGGGCTAAGCTTTGGAAGGAGAGCGTGGAACACAGTTGGAGAAA
AGAGGACCAAAGCGCCAGGAAGGAAAGTGGAAGCCACAATGAAGGTCGTC
CTGAAGAGGGAGAGTCTAACAAGAAGCAACAGACCAGGGAAACAGACAGC
TTTGAGAGGTGTATCGTCCTAGTGCACGCCTTTTGGCAGCAAGCCTTGCC
ATCTATGGATATGTTTACCGCAGTTCTCATGGAcgacttccccctccccc
tcctgggtccggaggcggagaacGAGTCGCGTGTTCTGGCTTCGACGGGG
GGCTCTCGCTGGCATCATTTCTTGGACCTCGTAGTCAGTTACCATCTGCG
TCCTGGCGGGCGTGTAACAGGTTACCTTAGTCGTGATCTGGACTTATGTC
GTGCGGATTGTACCTACACACGGTGTCCCGTCGAGGTGGTGGTTCCAACT
AATTGTAATTACGCGACACCGGGACGTCAAACCTACTTTGTGCCGTTGTT
GACACGAAATCGAATAGGTGGAGAACAccagaggggcgaggaggtaggcG
TTGCTGTGGGTTGCTCGCACATCATTActggaagggcaagaggcgATGCA
GCGATTACTGCTGAGTGCTATCAAAataaaaggagaaaggaagatgaATG
GGATGAGATTGACACACCTTACATGTGTAAAGCTGCTCGAAAAAGACGAT
GCATGCTAAGACATCTCCTCGAAGCCCAGAAATGTTGAATGGCCGAGACC
GCTGCTTCGATACCTCAGATTTCTCGTCTTGAGTACGGGAGGGATccaga
gggcaaggagctTCTCGTAATGCGTACCTTGCAGTCCcacgaaagaggga
agaagcacGCAGGCATGGAAAGGAGTGGGAAGCCAAGGGATGACGATGGT
ATCGTACCTGCTCCGGAGGCACTACAACCTTATCTGGGCACGAATACTAT
AGTGATGATGGAGTGGGAGAAAGAATACATGGAAAAGCTGGTTGAAGCCT
TGAATGTCCAGGCTGATGATGAGGTCTTGGAAATCGGGTGGGGTCTGGGT
TACTCTGCAGCGGCCATTCAAAGACGTCGGCCGCGGCGCCACGTGATAAT
CGAGTGTGACACTGGAGTCCTGGAGCGGGCTAAGCTTTGGAAGGAGAGCG
TGGAACACAGTTGGAGAAAAGAGGACCAAAGCGCCAGGAAGGAAAGTGGA
AGCCACAATGAAGGTCGTCCTGAAGAGGGAGAGTCTAACAAGAAGCAACA
GACCAGGGAAACAGACAGCTTTGAGAGGTGTATCGTCCTAGTGCACGCCT
TTTGGCAGCAAGCCTTGCCATCTATGGATATGTTTACCGCAGTTCTCATG
GAcgacttccccctccccctcctgggtccggaggcggagaacGAGTCGCG
TGTTCTGGCTTCGACGGGGGGCTCTCGCTGGCATCATTTCTTGGACCTCG
TAGTCAGTTACCATCTGCGTCCTGGCGGGCGTGTAACAGGTTACCTTAGT
CGTGATCTGGACTTATGTCGTGCGGATTGTACCTACACACGGTGTCCCGT
CGAGGTGGTGGTTCCAACTAATTGTAATTACGCGACACCGGGACGTCAAA
CCTACTTTGTGCCGTTGTTGACACGAAATCGAATAGGTGGAGAACAccag
aggggcgaggaggtaggcGTTGCTGTGGGTTGCTCGCACATCATTActgg
aagggcaagaggcgATGCAGCGATTACTGCTGAGTGCTATCAAAataaaa
ggagaaaggaagatgaATGGGATGAGATTGACACACCTTACATGTGTAAA
GCTGCTCGAAAAAGACGATGCATGCTAAGACATCTCCTCGAAGCCCAGAA
ATGTTGA

Synonyms

Publications