rna5580, rna5580 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5580
Unique Name	rna5580
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1140
Alignment location	CM002466.1:332144..334885 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100016g27.2903.mrna
Orig protein id	gnl\|cribi\|Naga_100016g27.2903
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:332144..334885 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g27	gene5392	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5580	rna5580-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25094.1	cds5566	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:332144..334885-
coding sequence from alignment at CM002466.1:332144..334885-

mRNA sequence

>rna5580 ID=rna5580|Name=rna5580|organism=Nannochloropsis gaditana|type=mRNA|length=1140bp
TACCAGCAGTATGGACAATGCCCAGCGTAGGTCTTTTCCACCCATCTTTT
CAGTCTTTCGAAAACAAACTCCTTCAGCCTTTAGGAGTGGATCATTACCT
CATCAGTCTACTGCAGCGGTCACTCCAACAACTGACACGAGAAATGTTCT
AACCGAATCTGACCGTCGAGAACAACGTCTCGCAAGAAATCGCGAGAGTG
CACGTCAAAGTCGTCGACGTAAGAAGGAAAACCTGGAAAATTTGAGTGCG
AAGCTGGGTCAATCGAATATGGAGCTTGAAGATCTCCGCCACGTTATAGA
AAGCAACCTGCGTTCTCAGGAAGATTGTACAGAGGATGAGAGACAAGCAT
TGCGCGCTTATCGATTCGCTCGCTTGCGTTGTCTTTTGTTCCCACCTCAC
GCATGCTTCTGGATGTGGCTTAATCGACGAGCGTGTGTATGGACTCAACA
GGCATCTTCGTCACAGCGCATCTCAGCAGCAAAAATCGGGGAAACTCTTA
TACAGGAGAAACAGGAGCAAGAGAGTGAGACAACAGGATGGGAAGCAAAG
GATGGACAGACATTATGGCCGTTGTTGTGTTTCGAGCTACAGTTGAAAGG
CGAGCAGGAGGAGCAAGTCAAAGCCATCCTATCCCAGGCTTCTGAAGAGA
TGACCCAAGAGTTGGAGGCCTTGCAAAAGATGGCATCGGCTGTAGGAACG
TTGTATAAAGATTTATGCGTGTCAAGTAAGCGCGTGGATTGTACGTATGA
GGCTGTGCGAGGGGTCCTGACTCGAGCGCAGCTCCAGGTCCTGAGGCGTT
ACGCAGTCGACGTTCCTGAGGCGACGTGAAATAATAGCAAAGCTTTCCAG
GAAGACAGGCACACGTCTTTGAATGCGCGCTTTTTGTTGTCCACCAACAG
CGGTTGGTGAGAAATTAAGTTTGCGGAAATGTCGATGAACTGATAGGATT
AATAATTAAACCATGTGAACAATTCGATTGGAAGGGTAGAAGGAAAGGAA
TCTGTTGGTATGGAAGGGGGTCAACTGCCGATGCGTGTGCTTTTCCTACG
AGGCTGAAATTTTGGAGATTACACCAGAAGATGAAGGTAAGAAAATTCTC
CCAAATGAAACAAAATGAATTTGAGGCAAGAAAAAGCTTC

protein sequence of rna5580

>rna5580-protein ID=rna5580-protein|Name=rna5580|organism=Nannochloropsis gaditana|type=polypeptide|length=452bp
MHKPLDSMNSNVLLARVSLRDNLLCVCDLKGVIVFASDDLLWALGLQGPT
TRHIGASLFDLLADEDVEEYKNSLRRKSGSLLRCKQNGCFVWLDIQCVSH
VPPQLKRALSRVQKARAAGFPSLVCLNNNSISENVNLIADINRAVAPHAM
NNSPLNHQSKALASASCAWAAGNVVGLEENVLTKDRTLDSFLTPAGQEEE
SATRPADKAVGEEDAVTEASDPEEEGIYATRAEPQASVGAINPCLPSFGC
LTLEDGANQGQRATRSLCTTACTTSSSVSSSEQLGDGLALWTDEEQLRQQ
QEEAAMVREYSFREIFEYLSAGAKSMSHATSFSLSGSRASSTLNMGPSTA
AASPSSPAAVLAQPCRDSRPFSERVAAKCRAAPEESFLSSHGLASGSSSW
RLQNKYKVSGYMGKAAATLGLGTVKSAAVGASALRHVPPMLDESGWDWYV
DV

mRNA from alignment at CM002466.1:332144..334885-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5580 ID=rna5580|Name=rna5580|organism=Nannochloropsis gaditana|type=mRNA|length=2742bp|location=Sequence derived from alignment at CM002466.1:332144..334885- (Nannochloropsis gaditana)
GGAAACTTTCGAGGCCGAGTCTTAACCCGCGGTGCTCTCATACTCTTGCC
TGTCTTCATAGAGATTCATCGGGGTGCGCGTTGGGAGAATTGGGAAACGG
GTTCATGTCATGTCTGTGATCATCTGCCTGGCTCCATGTCGTTCTTTTGG
CATTCAGGTGTTGGGAGAATCAGATGGCACTTTCAGTCAGAACAGTGTGG
TGTTCTTGTGCTTGACATCAACTGGCAGCCCCAGAATAAAATGGCGCGTT
CGGTTATGAAAACACATGTGTCAGATCTTCTTTCCCCCCCTCTAGTCTGT
GATTACATCATTGTTTGCACGCAGCACGCGTGGCTTGTGTCAGAGTCTTC
CACCTGTGGCGCGCTCAGTGACTGTGACGCCTATGTCTCAGAAGGCATCT
GCTACCGCCAGATCCGCTAGTTGATTCGTTCCGGCCTCAGCTTTGACACG
CGCCTTCTAACACCGCAGCATCCCTCACACTTGCACGGCAGGTCACTCAA
TGCACAAGCCACTCGACAGCATGAACAGCAATGTCCTCCTTGCTCGTGTC
TCCTTACGGGATAATTTGTTGTGTGTCTGTGACCTGAAGGGGGTGATCGT
CTTCGCCTCAGACGACCTCCTGTGGGCGTTGGGGCTTCAGGGGCCAACCA
CGCGCCACATTGGAGCAAGCCTTTTTGATTTGCTCGCCGACGAAGATGTT
GAAGAGTATAAGGTAGGGTATGGTGGGTTCTTGGTGGAGAAAAGTCATAG
GAAGGCAACAGTTTCTGCCTCGAACGCTTCTGCCCCTGTCGGCAGCCCGA
AAAAGCGATTTTTTGTGCATCTAAAAATGATTCTACCCCATGTGTAACCT
CGCCCTAATCAATACGATCACAGAATTCACTGCGAAGGAAGTCAGGGTCG
CTTCTGAGGTGCAAGCAAAATGGTTGCTTCGTCTGGCTGGACATTCAATG
CGTGTCTCATGTACCTCCCCAATTAAAGCGCGCTTTGAGTCGAGTACAGA
AGGCGCGCGCCGCTGGGTTCCCCTCTCTCGTGTGCCTTAACAACAATAGC
ATCAGTGAGAATGTGAACCTTATCGCCGACATAAATCGGGCAGTTGCGCC
CCACGCTATGAATAATAGCCCGCTTAACCACCAGAGCAAGGCCTTGGCCT
CCGCCTCGTGTGCTTGGGCGGCGGGGAATGTCGTCGGCTTGGAGGAAAAC
GTATTGACCAAGGATCGCACACTCGATTCCTTCCTTACGCCTGCTGGTCA
GGAGGAGGAGAGCGCAACAAGGCCTGCAGATAAGGCGGTAGGGGAGGAGG
ACGCGGTAACGGAAGCCTCGGACCCGGAGGAGGAGGGCATCTACGCCACT
CGCGCGGAGCCGCAGGCCTCGGTCGGTGCAATCAACCCGTGCCTTCCCTC
CTTTGGCTGCCTGACCTTGGAAGACGGTGCGAACCAGGGCCAGCGGGCGA
CAAGGAGCTTGTGCACCACAGCGTGTACCACCTCCTCCTCCGTCTCCTCC
TCGGAACAGCTGGGGGACGGCTTGGCGTTGTGGACCGACGAGGAGCAGCT
TCGGCAGCAGCAAGAAGAGGCGGCCATGGTGCGAGAGTATTCTTTCCGGG
AAATATTCGAGTACCTTAGCGCAGGGGCCAAGTCCATGAGTCATGCCACC
AGCTTCTCCCTGAGCGGTTCCCGGGCCTCGTCGACCCTGAACATGGGACC
GTCCACAGCAGCCGCGAGTCCAAGCTCGCCGGCCGCCGTGCTGGCTCAAC
CATGCCGTGACTCTCGACCCTTCAGCGAACGCGTAGCTGCCAAGTGTCGT
GCTGCTCCTGAGGAGAGCTTTCTTTCCAGCCACGGTCTGGCCTCCGGGTC
GTCCTCCTGGCGCCTTCAGAACAAGTACAAGGTCAGCGGGTACATGGGGA
AGGCAGCTGCGACTCTGGGGTTAGGGACGGTCAAAAGTGCTGCAGTGGGC
GCCTCAGCGCTTCGTCACGTCCCCCCCATGCTGGATGAGAGCGGGTGGGA
TTGGTATGTGGATGTGTGATGCTTCAATATCACAAGACTTCGTACCTGAT
GGGGAGGGTGTATACATGTGTTTGTATTTTAAGTGTCACGTGCATGTTTG
CGTCAGTGACAGTTAAGTGTGTGTTTGTCTCATAGAAAAGTGGACAAAAT
GGGGAGAGAATGAAGATTTAGGCTGCACTAGCGTGACATGAACCATATAC
AGTGAGAAATGTGCTAGCGTGGGAACTGCCTCATTTAAACGCAGTCATGC
ATGGCTCGTATCGGCACCTGCACTGTGATATCTATTGAATGTAGGATACA
GCAAGACAGAATGAGAACTGGAAATGACAGGAGTGAAAACGTCATTAGGA
CAGCAGAAAATGCGCGGATGCGGCAGGCTCCCTCCGAGTGGTGGCTCGGA
GTCGTGTGGCCGCCCGCTGTCGCTGACTGCACCACTGCGCATTTTCCTTT
AGACTCACGTACAAGGTACAATAGCCAGCAACACATGAAATTCAAGGATC
AAAACTTAGACTTTCGTCTAAGAGCATCTTGAACGGCGACGTCCAACTAC
AGTCTGCACGGCACAGGCAAAGTCTCGATCAGGATTACGAGAAATCCTGA
TTTAGGAAGAGACAACCAAATGATATGGCGCATGTAGTATGAAATTGAGC
AGAAAGTCGGCAAGAAAAGTGTTTTTTACAGGACAACGGGTACGAAGCTC
AACAGAATTCTGAGGCCGTAACCGAAGCTTTTTCTTGCCTCA

Coding sequence (CDS) from alignment at CM002466.1:332144..334885-

>rna5580 ID=rna5580|Name=rna5580|organism=Nannochloropsis gaditana|type=CDS|length=2718bp|location=Sequence derived from alignment at CM002466.1:332144..334885- (Nannochloropsis gaditana)
AATTCACTGCGAAGGAAGTCAGGGTCGCTTCTGAGGTGCAAGCAAAATGG
TTGCTTCGTCTGGCTGGACATTCAATGCGTGTCTCATGTACCTCCCCAAT
TAAAGCGCGCTTTGAGTCGAGTACAGAAGGCGCGCGCCGCTGGGTTCCCC
TCTCTCGTGTGCCTTAACAACAATAGCATCAGTGAGAATGTGAACCTTAT
CGCCGACATAAATCGGGCAGTTGCGCCCCACGCTATGAATAATAGCCCGC
TTAACCACCAGAGCAAGGCCTTGGCCTCCGCCTCGTGTGCTTGGGCGGCG
GGGAATGTCGTCGGCTTGGAGGAAAACGTATTGACCAAGGATCGCACACT
CGATTCCTTCCTTACGCCTGCTGGTCAGGAGGAGGAGAGCGCAACAAGGC
CTGCAGATAAGGCGGTAGGGGAGGAGGACGCGGTAACGGAAGCCTCGGAC
CCGGAGGAGGAGGGCATCTACGCCACTCGCGCGGAGCCGCAGGCCTCGGT
CGGTGCAATCAACCCGTGCCTTCCCTCCTTTGGCTGCCTGACCTTGGAAG
ACGGTGCGAACCAGGGCCAGCGGGCGACAAGGAGCTTGTGCACCACAGCG
TGTACCACCTCCTCCTCCGTCTCCTCCTCGGAACAGCTGGGGGACGGCTT
GGCGTTGTGGACCGACGAGGAGCAGCTTCGGCAGCAGCAAGAAGAGGCGG
CCATGGTGCGAGAGTATTCTTTCCGGGAAATATTCGAGTACCTTAGCGCA
GGGGCCAAGTCCATGAGTCATGCCACCAGCTTCTCCCTGAGCGGTTCCCG
GGCCTCGTCGACCCTGAACATGGGACCGTCCACAGCAGCCGCGAGTCCAA
GCTCGCCGGCCGCCGTGCTGGCTCAACCATGCCGTGACTCTCGACCCTTC
AGCGAACGCGTAGCTGCCAAGTGTCGTGCTGCTCCTGAGGAGAGCTTTCT
TTCCAGCCACGGTCTGGCCTCCGGGTCGTCCTCCTGGCGCCTTCAGAACA
AGTACAAGGTCAGCGGGTACATGGGGAAGGCAGCTGCGACTCTGGGGTTA
GGGACGGTCAAAAGTGCTGCAGTGGGCGCCTCAGCGCTTCGTCACGTCCC
CCCCATGCTGGATGAGAGCGGGTGGGATTGGTATGTGGATGTGTGAATGC
ACAAGCCACTCGACAGCATGAACAGCAATGTCCTCCTTGCTCGTGTCTCC
TTACGGGATAATTTGTTGTGTGTCTGTGACCTGAAGGGGGTGATCGTCTT
CGCCTCAGACGACCTCCTGTGGGCGTTGGGGCTTCAGGGGCCAACCACGC
GCCACATTGGAGCAAGCCTTTTTGATTTGCTCGCCGACGAAGATGTTGAA
GAGTATAAGAATTCACTGCGAAGGAAGTCAGGGTCGCTTCTGAGGTGCAA
GCAAAATGGTTGCTTCGTCTGGCTGGACATTCAATGCGTGTCTCATGTAC
CTCCCCAATTAAAGCGCGCTTTGAGTCGAGTACAGAAGGCGCGCGCCGCT
GGGTTCCCCTCTCTCGTGTGCCTTAACAACAATAGCATCAGTGAGAATGT
GAACCTTATCGCCGACATAAATCGGGCAGTTGCGCCCCACGCTATGAATA
ATAGCCCGCTTAACCACCAGAGCAAGGCCTTGGCCTCCGCCTCGTGTGCT
TGGGCGGCGGGGAATGTCGTCGGCTTGGAGGAAAACGTATTGACCAAGGA
TCGCACACTCGATTCCTTCCTTACGCCTGCTGGTCAGGAGGAGGAGAGCG
CAACAAGGCCTGCAGATAAGGCGGTAGGGGAGGAGGACGCGGTAACGGAA
GCCTCGGACCCGGAGGAGGAGGGCATCTACGCCACTCGCGCGGAGCCGCA
GGCCTCGGTCGGTGCAATCAACCCGTGCCTTCCCTCCTTTGGCTGCCTGA
CCTTGGAAGACGGTGCGAACCAGGGCCAGCGGGCGACAAGGAGCTTGTGC
ACCACAGCGTGTACCACCTCCTCCTCCGTCTCCTCCTCGGAACAGCTGGG
GGACGGCTTGGCGTTGTGGACCGACGAGGAGCAGCTTCGGCAGCAGCAAG
AAGAGGCGGCCATGGTGCGAGAGTATTCTTTCCGGGAAATATTCGAGTAC
CTTAGCGCAGGGGCCAAGTCCATGAGTCATGCCACCAGCTTCTCCCTGAG
CGGTTCCCGGGCCTCGTCGACCCTGAACATGGGACCGTCCACAGCAGCCG
CGAGTCCAAGCTCGCCGGCCGCCGTGCTGGCTCAACCATGCCGTGACTCT
CGACCCTTCAGCGAACGCGTAGCTGCCAAGTGTCGTGCTGCTCCTGAGGA
GAGCTTTCTTTCCAGCCACGGTCTGGCCTCCGGGTCGTCCTCCTGGCGCC
TTCAGAACAAGTACAAGGTCAGCGGGTACATGGGGAAGGCAGCTGCGACT
CTGGGGTTAGGGACGGTCAAAAGTGCTGCAGTGGGCGCCTCAGCGCTTCG
TCACGTCCCCCCCATGCTGGATGAGAGCGGGTGGGATTGGTATGTGGATG
TGTGAATGCACAAGCCACTCGACAGCATGAACAGCAATGTCCTCCTTGCT
CGTGTCTCCTTACGGGATAATTTGTTGTGTGTCTGTGACCTGAAGGGGGT
GATCGTCTTCGCCTCAGACGACCTCCTGTGGGCGTTGGGGCTTCAGGGGC
CAACCACGCGCCACATTGGAGCAAGCCTTTTTGATTTGCTCGCCGACGAA
GATGTTGAAGAGTATAAG

Synonyms

Publications