EWM25094.1, cds5566 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25094.1
Unique Name	cds5566
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:334174..334386 -
Alignment location	CM002466.1:332867..334012 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25094.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100016g27.2903.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:334174..334386 -
CM002466.1	supercontig	CM002466.1:332867..334012 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR000014	PAS

Homology

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BLAST of EWM25094.1 vs. NCBI_GenBank
Match: gi|585106732|gb|EWM25094.1| (hypothetical protein Naga_100016g27 [Nannochloropsis gaditana])

HSP 1 Score: 926.776 bits (2394), Expect = 0.000e+0
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0

Query:    1 MHKPLDSMNSNVLLARVSLRDNLLCVCDLKGVIVFASDDLLWALGLQGPTTRHIGASLFDLLADEDVEEYKNSLRRKSGSLLRCKQNGCFVWLDIQCVSHVPPQLKRALSRVQKARAAGFPSLVCLNNNSISENVNLIADINRAVAPHAMNNSPLNHQSKALASASCAWAAGNVVGLEENVLTKDRTLDSFLTPAGQEEESATRPADKAVGEEDAVTEASDPEEEGIYATRAEPQASVGAINPCLPSFGCLTLEDGANQGQRATRSLCTTACTTSSSVSSSEQLGDGLALWTDEEQLRQQQEEAAMVREYSFREIFEYLSAGAKSMSHATSFSLSGSRASSTLNMGPSTAAASPSSPAAVLAQPCRDSRPFSERVAAKCRAAPEESFLSSHGLASGSSSWRLQNKYKVSGYMGKAAATLGLGTVKSAAVGASALRHVPPMLDESGWDWYVDV 452
            MHKPLDSMNSNVLLARVSLRDNLLCVCDLKGVIVFASDDLLWALGLQGPTTRHIGASLFDLLADEDVEEYKNSLRRKSGSLLRCKQNGCFVWLDIQCVSHVPPQLKRALSRVQKARAAGFPSLVCLNNNSISENVNLIADINRAVAPHAMNNSPLNHQSKALASASCAWAAGNVVGLEENVLTKDRTLDSFLTPAGQEEESATRPADKAVGEEDAVTEASDPEEEGIYATRAEPQASVGAINPCLPSFGCLTLEDGANQGQRATRSLCTTACTTSSSVSSSEQLGDGLALWTDEEQLRQQQEEAAMVREYSFREIFEYLSAGAKSMSHATSFSLSGSRASSTLNMGPSTAAASPSSPAAVLAQPCRDSRPFSERVAAKCRAAPEESFLSSHGLASGSSSWRLQNKYKVSGYMGKAAATLGLGTVKSAAVGASALRHVPPMLDESGWDWYVDV
Sbjct:    1 MHKPLDSMNSNVLLARVSLRDNLLCVCDLKGVIVFASDDLLWALGLQGPTTRHIGASLFDLLADEDVEEYKNSLRRKSGSLLRCKQNGCFVWLDIQCVSHVPPQLKRALSRVQKARAAGFPSLVCLNNNSISENVNLIADINRAVAPHAMNNSPLNHQSKALASASCAWAAGNVVGLEENVLTKDRTLDSFLTPAGQEEESATRPADKAVGEEDAVTEASDPEEEGIYATRAEPQASVGAINPCLPSFGCLTLEDGANQGQRATRSLCTTACTTSSSVSSSEQLGDGLALWTDEEQLRQQQEEAAMVREYSFREIFEYLSAGAKSMSHATSFSLSGSRASSTLNMGPSTAAASPSSPAAVLAQPCRDSRPFSERVAAKCRAAPEESFLSSHGLASGSSSWRLQNKYKVSGYMGKAAATLGLGTVKSAAVGASALRHVPPMLDESGWDWYVDV 452

The following BLAST results are available for this feature:

BLAST of EWM25094.1 vs. NCBI_GenBank

BLAST of EWM25094.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106732\|gb\|EWM25094.1\|	0.000e+0	100.00	hypothetical protein Naga_100016g27 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5580	rna5580	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications