|
|
Properties
| Property Name | Value |
|---|
| Product | bzip transcription factor |
| Orig transcript id | gnl|cribi|Naga_100016g29.2971.mrna |
| Orig protein id | gnl|cribi|Naga_100016g29.2971 |
| Gene | ptbZIP8 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:331023..332162 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5579 ID=rna5579|Name=rna5579|organism=Nannochloropsis gaditana|type=mRNA|length=1533bp
AGAACCATCTCGTTGAAGTCCAGGTCAGGCGTACTCGACGTGCTCATTCG
ATGTCTGCTCATCGTCAGCACGAGGCCAGGTACGCTTGGACTTACAAGCC
TAGTGCGTACAATGCTGGTGAAGGGTATAAGGGTTTGTAAGCTTGCTTTA
ATCGGCTGATCTTCCGTTCCGAATCACTTCACAACGATTCGATTGCTTGT
CATCAAGCGAGTGGAGGGATGGAAGGGCTGCATATTGTAAATTGTACATC
GACATCCCCATACATGGCCATCCCAATTTCCAACGCTAAATTTTCCGCTC
CTCTTTTGTCAACATGGTCGAGCTTGGAGACACTTATTCCTATGTGCACT
ACATTTACGATAGAATCACTTCGATCACACCAGAAATGAAACAGGTTATT
ATCGCCCTTGGAATTCTTACTGGCGTAACTGAGGCTTTTTGGTTGCAGCC
TGTAAAGCAAAGTTCAAGAAGCCATTGCAGGAAGCTATTCGCTGAAGAAC
CTTCTTCAAGCAGTGTATGCGATAGCAGCTCGCGTCAAGGTTTTTTGCAG
ACTCTTGCAGGCCAGGCCGCACTCGTAGGGTTCGGGATGACTGCGGGCCC
ACTTTTGGTGGGTGGCAAGGCTGGCGTTGTCCAGCCCGCTCAAGCAGCGG
GCCTGTCGAAGGTGAACAGCGAGTTGGCAGGCTACGGGCTTCCACCCATT
TTGGACGTTCCGGGGGGATTCTCCCCTCTTGTTGAAGTGTATGGAAAAGC
TGCGGGCGCGAAAAAGGAGCGCGAGACCCTGCTGGTACAATTTCTATATC
CCAGTCTGTGGGTGGTGAGCAAACCTAGTATAGATAAGAATGGCGAGGAA
GGTACGATTTCCGCGGGCGACTACCAGAAAGGCGACTCGGCTGCATTCTA
CGTTGAAGAGGGCCCTGCGTCTGGAAAACTCGAGCAAGAATCAGCAGACT
ACTTCGGGGAGGTTGTGAAGCGTGCCATCGGGCAGAAAAGCCAGAACGTG
TACCAAAATTTCAAGGTTCTCAAGAAACGCCCTGGAGCTAAAGGCGCCAA
CGGGGCGCAGTACACGATCGTCGAATTCAAGTACGAGCTTCTGACGGGGG
CGGGTTTCACTGTTGATCGTAAGGGAGTCGCCAGTGTCACGCAAGTGGGC
AAGAACGTGCAAGGTTTGTGGGTCGCCACCACGGCTGCGCGGTGGAAGAA
GATCGGTAACGATTGTATAACAATGGCTGATTCCTTCCGCGTCTATGATG
GCATCGCACCCGCTTAGGAGACAATCGACAGGATAGGTACAGAGTAGCCA
ATTCAACAGTGTGGGTACTTAGTATTTGTTACTGGAATTGCCAGTAATCA
CTGATTGTGCGGCGATGTCGGTACGCACATCGCGCGCACGGATTTGCCTG
TTCTGTTACCACCACGCTCAAAGCAGAGGACATGGGCCCGAGATGGTGGG
ACAAATGGGATGTATTGCGCGCGTCCACTTCGCAGAAGATGCGATCTAGA
GCTTGAAAGAATTTATTATTGTCATAACTTTTG back to topprotein sequence of rna5579 >rna5579-protein ID=rna5579-protein|Name=rna5579|organism=Nannochloropsis gaditana|type=polypeptide|length=272bp
MDNAQRRSFPPIFSVFRKQTPSAFRSGSLPHQSTAAVTPTTDTRNVLTES
DRREQRLARNRESARQSRRRKKENLENLSAKLGQSNMELEDLRHVIESNL
RSQEDCTEDERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQASS
SQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQE
EQVKAILSQASEEMTQELEALQKMASAVGTLYKDLCVSSKRVDCTYEAVR
GVLTRAQLQVLRRYAVDVPEAT back to topmRNA from alignment at CM002466.1:331023..332162+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5579 ID=rna5579|Name=rna5579|organism=Nannochloropsis gaditana|type=mRNA|length=1140bp|location=Sequence derived from alignment at CM002466.1:331023..332162+ (Nannochloropsis gaditana)
TACCAGCAGTATGGACAATGCCCAGCGTAGGTCTTTTCCACCCATCTTTT
CAGTCTTTCGAAAACAAACTCCTTCAGCCTTTAGGAGTGGATCATTACCT
CATCAGTCTACTGCAGCGGTCACTCCAACAACTGACACGAGAAATGTTCT
AACCGAATCTGACCGTCGAGAACAACGTCTCGCAAGAAATCGCGAGAGTG
CACGTCAAAGTCGTCGACGTAAGAAGGAAAACCTGGAAAATTTGAGTGCG
AAGCTGGGTCAATCGAATATGGAGCTTGAAGATCTCCGCCACGTTATAGA
AAGCAACCTGCGTTCTCAGGAAGATTGTACAGAGGATGAGAGACAAGCAT
TGCGCGCTTATCGATTCGCTCGCTTGCGTTGTCTTTTGTTCCCACCTCAC
GCATGCTTCTGGATGTGGCTTAATCGACGAGCGTGTGTATGGACTCAACA
GGCATCTTCGTCACAGCGCATCTCAGCAGCAAAAATCGGGGAAACTCTTA
TACAGGAGAAACAGGAGCAAGAGAGTGAGACAACAGGATGGGAAGCAAAG
GATGGACAGACATTATGGCCGTTGTTGTGTTTCGAGCTACAGTTGaaagg
cgagcaggaggagcaagtCAAAGCCATCCTATCCCAGGCTTCTGAAGAGA
TGACCCAAGAGTTGGAGGCCTTGCAAAAGATGGCATCGGCTGTAGGAACG
TTGTATAAAGATTTATGCGTGTCAAGTAAGCGCGTGGATTGTACGTATGA
GGCTGTGCGAGGGGTCCTGACTCGAGCGCAGCTCCAGGTCCTGAGGCGTT
ACGCAGTCGACGTTCCTGAGGCGACGTGAAATAATAGCAAAGCTTTCCAG
GAAGACAGGCACACGTCTTTGAATGCGCGCTTTTTGTTGTCCACCAACAG
CGGTTGGTGAGAAATTAAGTTTGCGGAAATGTCGATGAACTGATAGGATT
AATAATTAAACCATGTGAACAATTCGATTGGAAGGgtagaaggaaaggaa
tcTGTTGGTATGGAAGGGGGTCAACTGCCGATGCGTGTGCTTTTCCTACG
AGGCTGAAATTTTGGAGATTACACCAGAAGATGAAGGTAAGAAAATTCTC
CCAAATGAAACAAAATGAATTTGAGGCAAGAAAAAGCTTC back to topCoding sequence (CDS) from alignment at CM002466.1:331023..332162+ >rna5579 ID=rna5579|Name=rna5579|organism=Nannochloropsis gaditana|type=CDS|length=819bp|location=Sequence derived from alignment at CM002466.1:331023..332162+ (Nannochloropsis gaditana)
ATGGACAATGCCCAGCGTAGGTCTTTTCCACCCATCTTTTCAGTCTTTCG
AAAACAAACTCCTTCAGCCTTTAGGAGTGGATCATTACCTCATCAGTCTA
CTGCAGCGGTCACTCCAACAACTGACACGAGAAATGTTCTAACCGAATCT
GACCGTCGAGAACAACGTCTCGCAAGAAATCGCGAGAGTGCACGTCAAAG
TCGTCGACGTAAGAAGGAAAACCTGGAAAATTTGAGTGCGAAGCTGGGTC
AATCGAATATGGAGCTTGAAGATCTCCGCCACGTTATAGAAAGCAACCTG
CGTTCTCAGGAAGATTGTACAGAGGATGAGAGACAAGCATTGCGCGCTTA
TCGATTCGCTCGCTTGCGTTGTCTTTTGTTCCCACCTCACGCATGCTTCT
GGATGTGGCTTAATCGACGAGCGTGTGTATGGACTCAACAGGCATCTTCG
TCACAGCGCATCTCAGCAGCAAAAATCGGGGAAACTCTTATACAGGAGAA
ACAGGAGCAAGAGAGTGAGACAACAGGATGGGAAGCAAAGGATGGACAGA
CATTATGGCCGTTGTTGTGTTTCGAGCTACAGTTGaaaggcgagcaggag
gagcaagtCAAAGCCATCCTATCCCAGGCTTCTGAAGAGATGACCCAAGA
GTTGGAGGCCTTGCAAAAGATGGCATCGGCTGTAGGAACGTTGTATAAAG
ATTTATGCGTGTCAAGTAAGCGCGTGGATTGTACGTATGAGGCTGTGCGA
GGGGTCCTGACTCGAGCGCAGCTCCAGGTCCTGAGGCGTTACGCAGTCGA
CGTTCCTGAGGCGACGTGA back to top
|