EWM25162.1, cds5565 (CDS) Nannochloropsis gaditana

Overview
NameEWM25162.1
Unique Namecds5565
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:331033..331851 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25162.1
Productbzip transcription factor
Orig transcript idgnl|cribi|Naga_100016g29.2971.mrna
GeneptbZIP8
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:331033..331851 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Homology
BLAST of EWM25162.1 vs. NCBI_GenBank
Match: gi|585106800|gb|EWM25162.1| (bzip transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 556.984 bits (1434), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query:    1 MDNAQRRSFPPIFSVFRKQTPSAFRSGSLPHQSTAAVTPTTDTRNVLTESDRREQRLARNRESARQSRRRKKENLENLSAKLGQSNMELEDLRHVIESNLRSQEDCTEDERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQASSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAILSQASEEMTQELEALQKMASAVGTLYKDLCVSSKRVDCTYEAVRGVLTRAQLQVLRRYAVDVPEAT 272
            MDNAQRRSFPPIFSVFRKQTPSAFRSGSLPHQSTAAVTPTTDTRNVLTESDRREQRLARNRESARQSRRRKKENLENLSAKLGQSNMELEDLRHVIESNLRSQEDCTEDERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQASSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAILSQASEEMTQELEALQKMASAVGTLYKDLCVSSKRVDCTYEAVRGVLTRAQLQVLRRYAVDVPEAT
Sbjct:    1 MDNAQRRSFPPIFSVFRKQTPSAFRSGSLPHQSTAAVTPTTDTRNVLTESDRREQRLARNRESARQSRRRKKENLENLSAKLGQSNMELEDLRHVIESNLRSQEDCTEDERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQASSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAILSQASEEMTQELEALQKMASAVGTLYKDLCVSSKRVDCTYEAVRGVLTRAQLQVLRRYAVDVPEAT 272          
BLAST of EWM25162.1 vs. NCBI_GenBank
Match: gi|553196245|ref|XP_005856299.1| (bzip transcription factor, partial [Nannochloropsis gaditana CCMP526] >gi|422292777|gb|EKU20079.1| bzip transcription factor, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 553.132 bits (1424), Expect = 0.000e+0
Identity = 270/272 (99.26%), Postives = 270/272 (99.26%), Query Frame = 0
Query:    1 MDNAQRRSFPPIFSVFRKQTPSAFRSGSLPHQSTAAVTPTTDTRNVLTESDRREQRLARNRESARQSRRRKKENLENLSAKLGQSNMELEDLRHVIESNLRSQEDCTEDERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQASSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAILSQASEEMTQELEALQKMASAVGTLYKDLCVSSKRVDCTYEAVRGVLTRAQLQVLRRYAVDVPEAT 272
            MDNAQRRSFPPIFSVFRKQTPSAFRSGSLPHQSTAAVTPTTDTRNVLTESDRREQRLARNRESARQSRRRKKENLENLSAKLGQSNMELEDLRHVIESNLRSQEDCTEDERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQASSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAILSQASEE TQELEALQKMASAVGTLYKDLCVSSKRVDCTYEAVRGVLTRAQLQVLRRYAVD PEAT
Sbjct:    5 MDNAQRRSFPPIFSVFRKQTPSAFRSGSLPHQSTAAVTPTTDTRNVLTESDRREQRLARNRESARQSRRRKKENLENLSAKLGQSNMELEDLRHVIESNLRSQEDCTEDERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQASSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAILSQASEEKTQELEALQKMASAVGTLYKDLCVSSKRVDCTYEAVRGVLTRAQLQVLRRYAVDAPEAT 276          
BLAST of EWM25162.1 vs. NCBI_GenBank
Match: gi|341604011|dbj|BAK53453.1| (bZIP transcription factor [Phaeodactylum tricornutum])

HSP 1 Score: 89.7373 bits (221), Expect = 1.450e-16
Identity = 71/223 (31.84%), Postives = 110/223 (49.33%), Query Frame = 0
Query:    8 SFPPIFSVFRKQTPSAFRSGSLPHQSTAAVTPTTDTRNVLTESDRREQRLARNRESARQSRRRKKENLENLSAKLGQSNMELEDLR--HVIESN---------------------LRSQEDCTEDERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQA-SSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAI 206
            S P + S     TP A    +LP  S  + T  T  +   T  +RR++RL RNRESAR SRRR+K  LE L  K+ Q +  ++  R  HV ++N                     L +    T  E    + +R+ +L+ L  PP   F +WL  +  V+ +   ++S+R+SAA+IGE ++    ++ S +        Q +WPLLC E+ L  +QEE+V+A 
Sbjct:  117 SVPVLVSAQHHPTPGA----ALPTASAPSGTALTVQKEP-TNRNRRQKRLERNRESARLSRRRRKHYLEVLEEKVTQLSHAMDRGRRAHVAQANRIRQSERHEIVQSGNVKHVVRLETALSRTSRENSVTQTFRWQQLKSLCLPPSTKFVLWLTLQNDVYFRGGRAASERLSAARIGERMLHSGNDKVSPS--------QAMWPLLCNEVGLSYDQEEKVRAF 326          
BLAST of EWM25162.1 vs. NCBI_GenBank
Match: gi|219123547|ref|XP_002182084.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406685|gb|EEC46624.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 88.1965 bits (217), Expect = 3.878e-16
Identity = 71/226 (31.42%), Postives = 111/226 (49.12%), Query Frame = 0
Query:    8 SFPPIFSVFRKQTPSAFRSGSLPHQSTAAVTPTTDTRNV---LTESDRREQRLARNRESARQSRRRKKENLENLSAKLGQSNMELEDLR--HVIESN---------------------LRSQEDCTEDERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQA-SSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAI 206
            S P + S     TP A    +LP  ++A   P+     V    T  +RR++RL RNRESAR SRRR+K  LE L  K+ Q +  ++  R  HV ++N                     L +    T  E    + +R+ +L+ L  PP   F +WL  +  V+ +   ++S+R+SAA+IGE ++    ++ S +        Q +WPLLC E+ L  +QEE+V+A 
Sbjct:  117 SVPFVVSAQHHPTPGA----ALP-TASAPPLPSGTALTVQKEPTNRNRRQKRLERNRESARLSRRRRKHYLEVLEEKVTQLSHAMDRGRRAHVAQANRIRQSERHEIVQSGNVKHVVRLETALSRTSRENSVTQTFRWQQLKSLCLPPSTKFVLWLTLQNDVYFRGGRAASERLSAARIGERMLHSGNDKVSPS--------QAMWPLLCNEVGLSYDQEEKVRAF 329          
BLAST of EWM25162.1 vs. NCBI_GenBank
Match: gi|1173949044|gb|OQR97118.1| (hypothetical protein ACHHYP_12692 [Achlya hypogyna])

HSP 1 Score: 78.1814 bits (191), Expect = 7.511e-13
Identity = 91/300 (30.33%), Postives = 138/300 (46.00%), Query Frame = 0
Query:   14 SVFRKQTPSAFR----SGSLPHQSTAAV------TPTTDTRNVLTESDRREQRLARNRESARQSRRRKKENLENLSAKLGQSNMELEDLR--HV-----IESNLRSQ-------------------EDCTE-----------------DERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQASSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAILSQASEEMTQELEALQKMASAVGTLYK---DLCVSSKRVDCTYEAVRGVLTRAQ 257
            S    + PS+FR    S ++   STA+       +PT     + T+ D+R++RLARNRESARQSRRRKK+ LE L  K+ Q   E++  R  H+       S L++Q                    + TE                 +ER+A+  Y F +L  LL PP+  F +W++       Q  S   +I  A    T    K+  ES+     AK   TLW  L  EL +  EQEE++K+   ++++  T + E  +K+A AV  L +   ++   S  V    +AV+ +LT  Q
Sbjct:   68 SSIHNEQPSSFRAHHQSSNIDTASTASGEFDGPDSPTGGDNELDTDDDKRQRRLARNRESARQSRRRKKQYLELLEEKVAQLTEEIDATRGEHLESADKTLSTLKTQMVASLYEKLATLPPMASLGPELTEELRNGVKLMQERYGPHSEERRAVVNYHFQQLDNLLLPPYTRFLLWMS------IQDESFFSKIQPAVAAAT----KKASESDRKDSSAK-KDTLWAALSSELGMTYEQEEKIKSHY-KSTDSKTAKAER-RKIAMAVTYLNQLKTNMEERSAAVQTHADAVQSILTPEQ 354          
BLAST of EWM25162.1 vs. NCBI_GenBank
Match: gi|325186598|emb|CCA21144.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 75.8702 bits (185), Expect = 5.237e-12
Identity = 78/283 (27.56%), Postives = 131/283 (46.29%), Query Frame = 0
Query:   25 RSGSLP----------HQSTAAVTPTTDTRNVLTESDRREQRLARNRESARQSRRRKKENLENLSAKLGQ---------------SNMELEDLRH-VIESNLRSQEDCTED-----------------------ERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQASSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAIL-SQASEEMTQELEALQKMASAVGTLYKDLCVSSKRVDCTYEAVRGVLTRAQ 257
            RS SLP           Q+  +++    +   +T+ ++R++RLARNRESARQSRRRKK+ LE L  K+ Q               ++  LE++R  +I+S L   E   +D                       ER+A++ Y F +L  LL PP+  F +WL     +  +   +  R++ A  G+       +++S T+    KD   LWP L  +L L  EQ+E+++ +  SQ +  +  E   +   A+ +  L  +L   +  V    +A+  +LT +Q
Sbjct:  120 RSSSLPSFDEQDGEEMQQNNDSISSGGTSSKRVTD-EKRQRRLARNRESARQSRRRKKQYLELLEEKVEQLTDSIDVTRANHLENADQALENVRSTLIQSLLHQLESECDDVEIQKKLRQGVELLQNRFGPNSIERKAVKDYNFRQLDNLLLPPYCRFLLWL----SIQDESFFNEGRVANAPNGKVNGSSDSDKKSGTSSMIRKDA--LWPALVADLGLTYEQDEKIRFLYTSQGAIALKPERRRMAFAAAYLSRLKTNLEERAAVVQKHTDAIHSILTPSQ 395          
BLAST of EWM25162.1 vs. NCBI_GenBank
Match: gi|673027724|ref|XP_008867823.1| (hypothetical protein H310_05004 [Aphanomyces invadans] >gi|574476596|gb|ETW03594.1| hypothetical protein H310_05004 [Aphanomyces invadans])

HSP 1 Score: 72.7886 bits (177), Expect = 4.888e-11
Identity = 57/201 (28.36%), Postives = 89/201 (44.28%), Query Frame = 0
Query:   48 TESDRREQRLARNRESARQSRRRKKENLENLSAKLGQ--SNMELEDLRHVIESN-----------------------------------------LRSQEDCTEDERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQASSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKA 205
            TE ++R +RL RNR SAR SRRRKK+ LE L  K+ Q   ++++  + H+  ++                                         L+ +     +ERQAL  Y F +L  LL PP+ CF +W++ +   +  +   +   S+ K GE L Q K   +        KDG  LW  +  E+ +  EQEE++K 
Sbjct:  109 TEDEKRRKRLERNRISARDSRRRKKQYLELLEEKVAQLTEDIDITRMEHLDTADKTITAVKAQMITSLYEKLAPLPPNAPLPADVEDELGQVAQLLKDRYGPNSEERQALIKYHFHQLDGLLLPPYTCFLLWMSLQDDAFFARTLQTPSSSSKKAGEALEQRKDGGK--------KDG--LWSSMSSEVAILYEQEEKIKG 299          
BLAST of EWM25162.1 vs. NCBI_GenBank
Match: gi|1210519164|dbj|GAX21997.1| (hypothetical protein FisN_25Hh203 [Fistulifera solaris])

HSP 1 Score: 73.1738 bits (178), Expect = 5.770e-11
Identity = 64/238 (26.89%), Postives = 110/238 (46.22%), Query Frame = 0
Query:   52 RREQRLARNRESARQSRRRKKENLENLSAKLGQSNMELE----------------------------DLRHVIESNLRSQEDCTEDERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQA-SSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKA---ILSQASEEMTQELEALQKMASAVGTLYKDLCVSSKRVDCTYEAVRGVLTRAQ 257
            RR++RL RNRESAR SRRR+K+ LE L   + Q + E++                            D   V+E  L      T    + +  + + +L+  + PP   F +WL+ +   + +   ++S+R+SAA+IGE ++    ++ +          Q++WPL C E+ L  EQEE+V++   +L QA E       A       + +++  +   + RV     A + VL+ AQ
Sbjct:  101 RRQKRLERNRESARLSRRRRKQYLEVLEENVNQLSREVDRGRREHVSRAVWTIHQKRVGILTESPTIDKLEVLEKGLSR----TSHSLRVVNTFHWQQLQSFVLPPSTKFTLWLSLQNDAYFRGGRAASERLSAARIGERMLSAGTDKVTPL--------QSMWPLFCNEVGLSYEQEEKVRSYQRVLLQAPESWLHRHTAF-AAEKTMKSVHDAIEALTNRVGERENATQAVLSPAQ 325          
BLAST of EWM25162.1 vs. NCBI_GenBank
Match: gi|635366362|emb|CCI45318.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 71.633 bits (174), Expect = 1.360e-10
Identity = 68/247 (27.53%), Postives = 117/247 (47.37%), Query Frame = 0
Query:   51 DRREQRLARNRESARQSRRRKKENLENLSAKLGQ---------------SNMELEDLRHVIESNL--RSQEDCTED----------------------ERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQASSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAIL-SQASEEMTQELEALQKMASAVGTLYKDLCVSSKRVDCTYEAVRGVLTRAQ 257
            ++R++RLARNRESARQSRRRKK+ LE L  K+ Q               ++  LE++R  +  +L  + Q +C +                       ER+A++ Y F +L  LL PP+  F +WL     +  +   +  R++ A  G+       +++  T+   +KD   LWP L  +L L  EQ+E+++ +  SQ +  +  E   +  +A+ +  L  +L   +  V+    A+  +LT  Q
Sbjct:  108 EKRQRRLARNRESARQSRRRKKQYLELLEEKVEQLTESIDVTRANHLENADQALENVRSTLIQSLVHQLQAECDDAEIQEKLRQGVELLQNRFGPNSLERKAIKDYNFRQLDNLLLPPYCRFLLWL----SIQDESFFNEGRVTNASNGKVNSASDSDKKPGTSSVLSKDA--LWPALVADLGLTYEQDEKLRFLYTSQEAIALKPERRRMAFVAAYLSRLNTNLEERATAVEKHTNAIHSILTPDQ 348          
BLAST of EWM25162.1 vs. NCBI_GenBank
Match: gi|397622270|gb|EJK66630.1| (hypothetical protein THAOC_12443 [Thalassiosira oceanica])

HSP 1 Score: 71.633 bits (174), Expect = 2.048e-10
Identity = 66/226 (29.20%), Postives = 104/226 (46.02%), Query Frame = 0
Query:   52 RREQRLARNRESARQSRRRKKENLENLSAKLGQ-SNMELEDLRHVIES--------NLRSQEDCTEDE-----------------RQALRAYRFARLRCLLFPPHACFWMWL---------------NRRACVWTQQASSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAILSQASEEMTQELEA----LQKMASAVGTLY 232
            +R QRLARNRESAR SRRRKKE L +LS K+ +  NM   ++R+ I++         ++   +   D                  R+A+ A++F  LR      H  + +W+               N       ++   + R ++ +IGE L  E++   +     +A D    WPL C E+ +  EQEE+   I++QA EE  Q+++     L KM  AV T +
Sbjct:  418 KRAQRLARNRESARNSRRRKKEQLSSLSTKVKKLQNMLDVEIRNKIKTMEVGMARQRVKLLNNSVSDHNGAMASVFRLTSVNCPVRRAVLAHQFGSLRRAFIANHNQYAIWMMMHSSSFFTAAHNYKNDSLTASGRKNPGNARNNSKQIGEELANEEKFDGNAGATCDATDELRAWPLYCHEVVMTMEQEER---IINQAHEEF-QKIDNLPGRLNKMKLAVSTTH 639          
The following BLAST results are available for this feature:
BLAST of EWM25162.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106800|gb|EWM25162.1|0.000e+0100.00bzip transcription factor [Nannochloropsis gaditan... [more]
gi|553196245|ref|XP_005856299.1|0.000e+099.26bzip transcription factor, partial [Nannochloropsi... [more]
gi|341604011|dbj|BAK53453.1|1.450e-1631.84bZIP transcription factor [Phaeodactylum tricornut... [more]
gi|219123547|ref|XP_002182084.1|3.878e-1631.42predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1173949044|gb|OQR97118.1|7.511e-1330.33hypothetical protein ACHHYP_12692 [Achlya hypogyna... [more]
gi|325186598|emb|CCA21144.1|5.237e-1227.56conserved hypothetical protein [Albugo laibachii N... [more]
gi|673027724|ref|XP_008867823.1|4.888e-1128.36hypothetical protein H310_05004 [Aphanomyces invad... [more]
gi|1210519164|dbj|GAX21997.1|5.770e-1126.89hypothetical protein FisN_25Hh203 [Fistulifera sol... [more]
gi|635366362|emb|CCI45318.1|1.360e-1027.53unnamed protein product [Albugo candida][more]
gi|397622270|gb|EJK66630.1|2.048e-1029.20hypothetical protein THAOC_12443 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5579rna5579Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications