rna5578, rna5578 (mRNA) Nannochloropsis gaditana

Overview
Namerna5578
Unique Namerna5578
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3111
Alignment locationCM002466.1:329120..330652 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g30.2938.mrna
Orig protein idgnl|cribi|Naga_100016g30.2938
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:329120..330652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g30gene5390Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25129.1cds5564Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5578rna5578-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5578 ID=rna5578|Name=rna5578|organism=Nannochloropsis gaditana|type=mRNA|length=3111bp
GGAAAATGTGCCGAACAACGATAAGAGCCGGGCCCATAACGAGATGCTCA
TGATGCTCATGGCTTACCTCCATGCTCGTAAAACCAACAAATCAGTGGAA
TTTATTGATTCTGTGGCGCCGAAAGTCTAGATTATTTAACTAACCGAACA
TTACTAACCATAGGGTTTCATGTTAAACATGCCGTTGCACAAGAAGCGCA
CTCTGCGGAGGATGTTTGTAGCGGTCACGCCCGCCATTGTCCGTACTCTG
CTATTGGGCACTCTTGCTGTGGTCTGCGCCTTCCCGTTTCTATTTTCTTC
CTTAAGCGAAATAGAGCCATTGACGTATAGATTTACATTGCCAAAAACTT
CACTTAATGCTCTGCGTTACGAAGTGGCATCCGTAAAAGAGGAGACGCCA
ACTCTCCCGGCGCGGAAACGTCAACAGGAACAGGATGAACATCAGTCCAA
GAAGTTTGTAAGGGCGGTCACCTCCGCTGGAAGCGCTCCAGAGAAAGCAG
TTGGGACTCATGGCAATTTTAAGACGGCTGCAGCTTCACTTCCTGCCGCA
CATATGGGCTCTCACCTTGACAGTGGTGATAAGAAAACACCAGAATACCA
CCAGAAGATGGAATTCATCGTTTTAGAGGGCTCTGATCCGATCAAGAAAG
CACTTGTCCAGCACCAAGCTAAAGATGACATTCACGTATACATGGACTGG
CCCTTACCCGCAACACGATTTTCCCTTCCCAACTATCGATCATTGGAATC
GGTGCTCACGCAGTACCCGAATGCGCACGTCCGCATTTTGATGGTAACAC
CCTCCCGAGCTGCGCGCCATGACTATGCGAATACGCTATCGTCTACACAA
TTTGAAAAATATCGCAAACGCGGTTACGATGTACAGTTTGAGGTCCTGTC
TGAGAAAACCGTGTTGGAACTTCATGAGCCAGACCGTCCCGGATTCACGT
ATTTCACCACTGTGCTCTTTCCTCGCCTGGAGAAGACAATATTCGACGAG
TCTTTCTTTACGAAGACAGAGAATGCTGTCCAGGATTTCAAGACAAACCA
CTTCTTTCGCCTGTTTTCCCTCTGGCGCACTGGCGGCATTTACACGGATT
TCTCCATGTTGTTCATCCGGCCTCTGCCGCCCCGAGAGGCATCTTGGAGC
TTCCCAGAAGAGTGCGGCTCCGTGACGTCAAAAACGTCGGCAACCGATGC
CACCGTTCACTTTAACGACGAACACTGGCGGTACTCGGGCAGCCAAAATC
CGTATGTCCTGCACTTTGAAGCGCAGAGTCCTGTACTTGGTTGTGTTCTG
TCTCGCTTTGACGACAAGAGCGACACGCTGCACGAGTGCATGCTCAAAAG
TACGAAAAGCGGTTCCGATTGCCTGCAAGAATCATTGGTACGGTGTGGTG
CATCCTCTCCGGGCGCCAAAGGCGACTTAGCCGACCACATAGAGTCCTTC
GTCGATTGGTCAGCGTGTAATAGCAGTCAGAGCGGAAAAGTTGTGCCACC
ACCTTCTCGTAATGTTGCAATGCTGGCGATGGCCCGCGAGGCTATGGAAG
GAAGCTGGCAAGTTTCATCAAACCTGCGCGCGCTTTTTGAAAAGAATGTC
TACTTGAATCGCTGGCATCCCTCGCAGGTTGATTCGCACTGTGCGAGGCA
GTGTGACTTCTACACGCATGCCGTCGCCCGTGCGCGAGCTCCTTTCCATC
AAACCAAATTCTCCCTGTCAAAAGAAGATGCAGAGGCCTCCAAGTATATT
TGTGCACCCTCTATCATTATACCAGGCGCTATGAAGGCCGCGAGCTCGAG
CCTTTTCGCAGCCATTGCCGAACACCCGCAAGTGTTGCGACCAATACGAG
GACAGGGCTTCAAGGAAACAGGCACCTACATGAATATCCCGGGTAAGGAT
CACTTCAAACATCGACTGCAGGCTTTCCCTTTCATTGAACCCGGCGAGAA
CTTTGTTGCGATCGATGGAACTATGTACTACCTGGATAGAGACGAGAGTG
CCAAGCAGATCGTTGCCGATACTCCTAACGTGCGAGCGATCATCTCTCTC
AGAGATCCAACACTTCGGGCATTTGATCAATACCGCAGCGATTTCTTCAA
TGGAACGGAATCATTTGCAGACGCTGCAAAGCTTTCTGTACCAATTTTAC
GAACATGCTACCAGGAGCATCTCGCGCATGTTGACATCCGTGCTCTTCTA
CGGCATGGGAAAGCATCAGAATTGTCCGGGCAAATTGATTTTTGCACGTC
CGCGCTGATGCGCACGCCATCCCGGCGCGCCATTTTAACTTCTTTATACT
TTCCTCAGGTGTTGCGCTGGTCCTCAGTAATCAGCAAAGATCGGCTTTTA
GTAGTCACGAAAGAGGAGCTGAGTCGCGATCCCGAGCCGGTTCTGGCCAA
AGTCTTTGAATTTTTAGAACTTTGCAAATTCAAGAAGACATTCAAGGCAG
AAAACATTTCCACAATGCCCATGCCAGCAGGATATGGACTTACAGAGCAA
GCCTTGATTGAGTTGAACGAGGCTTTTCAACCATGGAATCACGCTCTTGC
CCGTCTCGTGGATCGTCAGTTTGATTGGCCGAGCCCTAGTGAAGCGCTGG
TCAAAGCGAAATTGCAATTTCATCGCATTGTCATCTTTCAAAAAATTGCC
AATGCACAAACAACTTGCATGGATTGTAAGCGCATTCACGCACATTTGGC
TGCTCAGAAGGGTGTCAACCCTGATACTGATATTGAAGTGGTCGCGTTGC
GTCACGACGATTTAGCCTGGACAGACGTCCTTAAAGCGACTGGAGATAGT
GCAAAGTTAACAGACTCCATGCCATATGTTTTTATACAAGGTGTTTACGT
CAAAGATTTAAAAGGTGGCGAAGAGCATGATGAAGGTAATCTGAATACGC
TTGTGGTTGCCTTGTCCAAAGCACATGAATTAGGAAACCATCGGACCTAT
GAACCTTTTTTAGATGACTAGAAACCTACAAACTGTGAACATAGTAGAAG
GGGAGTAATGACGCTTTTAAAGAAATGTAACCAATGAAATGAAAGAGTTT
GCCTATTAGGAATAGAATTTGTGCTAGTTTTAAACAAGATCCGTCTTTTC
AATGCCATACC
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protein sequence of rna5578

>rna5578-protein ID=rna5578-protein|Name=rna5578|organism=Nannochloropsis gaditana|type=polypeptide|length=317bp
MVELGDTYSYVHYIYDRITSITPEMKQVIIALGILTGVTEAFWLQPVKQS
SRSHCRKLFAEEPSSSSVCDSSSRQGFLQTLAGQAALVGFGMTAGPLLVG
GKAGVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAK
KERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEG
PASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQY
TIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGND
CITMADSFRVYDGIAPA
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mRNA from alignment at CM002466.1:329120..330652-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5578 ID=rna5578|Name=rna5578|organism=Nannochloropsis gaditana|type=mRNA|length=1533bp|location=Sequence derived from alignment at CM002466.1:329120..330652- (Nannochloropsis gaditana)
AGAACCATCTCGTTGAAGTCCAGGTCAGGCGTACTCGACGTGCTCATTCG
ATGTCTGCTCATCGTCAGCACGAGGCCAGGTACGCTTGGACTTACAAGCC
TAGTGCGTACAATGCTGGTGAAGGGTATAAGGGTTTGTAAGCTTGCTTTA
ATCGGCTGATCTTCCGTTCCGAATCACTTCACAACGATTCGATTGCTTGT
CATCAAGCGAGTGGAGGGATGGAAGGGCTGCATATTGTAAATTGTACATC
GACATCCCCATACATGGCCATCCCAATTTCCAACGCTAAATTTTCCGCTC
CTCTTTTGTCAACATGGTCGAGCTTGGAGACACTTATTCCTATGTGCACT
ACATTTACGATAGAATCACTTCGATCACACCAGAAATGAAACAGGTTATT
ATCGCCCTTGGAATTCTTACTGGCGTAACTGAGGCTTTTTGGTTGCAGCC
TGTAAAGCAAAGTTCAAGAAGCCATTGCAGGAAGCTATTCGCTGAAGAAC
CTTCTTCAAGCAGTGTATGCGATAGCAGCTCGCGTCAAGGTTTTTTGCAG
ACTCTTGCAGGCCAGGCCGCACTCGTAGGGTTCGGGATGACTGCGGGCCC
ACTTTTGGTGGGTGGCAAGGCTGGCGTTGTCCAGCCCGCTCAAGCAGCGG
GCCTGTCGAAGGTGAACAGCGAGTTGGCAGGCTACGGGCTTCCACCCATT
TTGGACGTTCCGGGGGGATTCTCCCCTCTTGTTGAAGTGTATGGAAAAGC
TGCGGGCGCGAAAAAGGAGCGCGAGACCCTGCTGGTACAATTTCTATATC
CCAGTCTGTGGGTGGTGAGCAAACCTAGTATAGATAAGAATGGCGAGGAA
GGTACGATTTCCGCGGGCGACTACCAGAAAGGCGACTCGGCTGCATTCTA
CGTTGAAGAGGGCCCTGCGTCTGGAAAACTCGAGCAAGAATCAGCAGACT
ACTTCGGGGAGGTTGTGAAGCGTGCCATCGGGCAGAAAAGCCAGAACGTG
TACCAAAATTTCAAGGTTCTCAAGAAACGCCCTGGAGCTAAAGGCGCCAA
CGGGGCGCAGTACACGATCGTCGAATTCAAGTACGAGCTTCTGACGGGGG
CGGGTTTCACTGTTGATCGTAAGGGAGTCGCCAGTGTCACGCAAGTGGGC
AAGAACGTGCAAGGTTTGTGGGTCGCCACCACGGCTGCGCGGTGGAAGAA
GATCGGTAACGATTGTATAACAATGGCTGATTCCTTCCGCGTCTATGATG
GCATCGCACCCGCTTAGGAGACAATCGACAGGATAGGTACAGAGTAGCCA
ATTCAACAGTGTGGGTACTTAGTATTTGTTACTGGAATTGCCAGTAATCA
CTGATTGTGCGGCGATGTCGGTACGCACATCGCGCGCACGGATTTGCCTG
TTCTGTTACCACCACGCTCAAAGCAGAGGACATGGGCCCGAGATGGTGGG
ACAAATGGGATGTATTGCGCGCGTCCACTTCGCAGAAGATGCGATCTAGA
GCTTGAAAGAATTTATTATTGTCATAACTTTTG
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Coding sequence (CDS) from alignment at CM002466.1:329120..330652-

>rna5578 ID=rna5578|Name=rna5578|organism=Nannochloropsis gaditana|type=CDS|length=954bp|location=Sequence derived from alignment at CM002466.1:329120..330652- (Nannochloropsis gaditana)
ATGGTCGAGCTTGGAGACACTTATTCCTATGTGCACTACATTTACGATAG
AATCACTTCGATCACACCAGAAATGAAACAGGTTATTATCGCCCTTGGAA
TTCTTACTGGCGTAACTGAGGCTTTTTGGTTGCAGCCTGTAAAGCAAAGT
TCAAGAAGCCATTGCAGGAAGCTATTCGCTGAAGAACCTTCTTCAAGCAG
TGTATGCGATAGCAGCTCGCGTCAAGGTTTTTTGCAGACTCTTGCAGGCC
AGGCCGCACTCGTAGGGTTCGGGATGACTGCGGGCCCACTTTTGGTGGGT
GGCAAGGCTGGCGTTGTCCAGCCCGCTCAAGCAGCGGGCCTGTCGAAGGT
GAACAGCGAGTTGGCAGGCTACGGGCTTCCACCCATTTTGGACGTTCCGG
GGGGATTCTCCCCTCTTGTTGAAGTGTATGGAAAAGCTGCGGGCGCGAAA
AAGGAGCGCGAGACCCTGCTGGTACAATTTCTATATCCCAGTCTGTGGGT
GGTGAGCAAACCTAGTATAGATAAGAATGGCGAGGAAGGTACGATTTCCG
CGGGCGACTACCAGAAAGGCGACTCGGCTGCATTCTACGTTGAAGAGGGC
CCTGCGTCTGGAAAACTCGAGCAAGAATCAGCAGACTACTTCGGGGAGGT
TGTGAAGCGTGCCATCGGGCAGAAAAGCCAGAACGTGTACCAAAATTTCA
AGGTTCTCAAGAAACGCCCTGGAGCTAAAGGCGCCAACGGGGCGCAGTAC
ACGATCGTCGAATTCAAGTACGAGCTTCTGACGGGGGCGGGTTTCACTGT
TGATCGTAAGGGAGTCGCCAGTGTCACGCAAGTGGGCAAGAACGTGCAAG
GTTTGTGGGTCGCCACCACGGCTGCGCGGTGGAAGAAGATCGGTAACGAT
TGTATAACAATGGCTGATTCCTTCCGCGTCTATGATGGCATCGCACCCGC
TTAG
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Synonyms
Publications