EWM25129.1, cds5564 (CDS) Nannochloropsis gaditana

Overview
NameEWM25129.1
Unique Namecds5564
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:329386..330339 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25129.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g30.2938.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:329386..330339 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR016123Mog1/PsbP_a/b/a-sand
Homology
BLAST of EWM25129.1 vs. NCBI_GenBank
Match: gi|585106767|gb|EWM25129.1| (hypothetical protein Naga_100016g30 [Nannochloropsis gaditana])

HSP 1 Score: 645.58 bits (1664), Expect = 0.000e+0
Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0
Query:    1 MVELGDTYSYVHYIYDRITSITPEMKQVIIALGILTGVTEAFWLQPVKQSSRSHCRKLFAEEPSSSSVCDSSSRQGFLQTLAGQAALVGFGMTAGPLLVGGKAGVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDGIAPA 317
            MVELGDTYSYVHYIYDRITSITPEMKQVIIALGILTGVTEAFWLQPVKQSSRSHCRKLFAEEPSSSSVCDSSSRQGFLQTLAGQAALVGFGMTAGPLLVGGKAGVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDGIAPA
Sbjct:    1 MVELGDTYSYVHYIYDRITSITPEMKQVIIALGILTGVTEAFWLQPVKQSSRSHCRKLFAEEPSSSSVCDSSSRQGFLQTLAGQAALVGFGMTAGPLLVGGKAGVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDGIAPA 317          
BLAST of EWM25129.1 vs. NCBI_GenBank
Match: gi|553196147|ref|XP_005856277.1| (hypothetical protein NGA_2003000, partial [Nannochloropsis gaditana CCMP526] >gi|422292755|gb|EKU20057.1| hypothetical protein NGA_2003000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 602.053 bits (1551), Expect = 0.000e+0
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0
Query:   21 ITPEMKQVIIALGILTGVTEAFWLQPVKQSSRSHCRKLFAEEPSSSSVCDSSSRQGFLQTLAGQAALVGFGMTAGPLLVGGKAGVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDGIAPA 317
            ITPEMKQVIIALGILTGVTEAFWLQPVKQSSRSHCRKLFAEEPSSSSVCDSSSRQGFLQTLAGQAALVGFGMTAGPLLVGGKAGVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDGIAPA
Sbjct:    1 ITPEMKQVIIALGILTGVTEAFWLQPVKQSSRSHCRKLFAEEPSSSSVCDSSSRQGFLQTLAGQAALVGFGMTAGPLLVGGKAGVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDGIAPA 297          
BLAST of EWM25129.1 vs. NCBI_GenBank
Match: gi|1210530392|dbj|GAX10976.1| (hypothetical protein FisN_2Lh506 [Fistulifera solaris])

HSP 1 Score: 206.068 bits (523), Expect = 2.161e-61
Identity = 120/279 (43.01%), Postives = 166/279 (59.50%), Query Frame = 0
Query:   41 AFWLQPVKQSSRSHCRKLFAEEPSSSSVC------DSSSRQGFLQTLAGQAALVGFGMTAGPLLVGGKAGVVQPAQA-AGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPAS-GKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVY 311
            AFW         + C     +EP+S  V       D+ + +G  ++   QAA+     T G +   G+   +QPA A +G+SKV+++L GYGLPP+  VP GF+PL+E+YGK     K R  +LV F +P  WVV  PS D NGE+GT+ AGDY KGD+A F+V   P     +  +  + F + + ++IGQK +N+YQNFKV K  P  K   G  Y + +FKY+LLTGAGF VDRKGVAS+T  G  V+ LW A+T+AR+KK   +   + DSFR Y
Sbjct:   11 AFW---------AGCSAFTVQEPASRRVTSLSLSEDNMTTEGSRRSFLSQAAI-----TTG-MACFGEILSLQPANAVSGVSKVDAKLRGYGLPPLGPVPDGFAPLLEIYGKG----KNRFPILVSFSHPITWVVQTPSNDVNGEDGTVQAGDYGKGDTATFFVYSDPGHVNDIASQPKELFEKALMKSIGQKGENMYQNFKVTKLVPVTKA--GQTYVMADFKYQLLTGAGFEVDRKGVASITSEGPAVEVLWAASTSARFKKTEQNLRNIVDSFRCY 268          
BLAST of EWM25129.1 vs. NCBI_GenBank
Match: gi|1210528332|dbj|GAX13021.1| (hypothetical protein FisN_2Hh506 [Fistulifera solaris])

HSP 1 Score: 204.527 bits (519), Expect = 3.207e-61
Identity = 113/250 (45.20%), Postives = 152/250 (60.80%), Query Frame = 0
Query:   64 SSSSVCDSSSRQGFLQTLAGQAALVGFGMTAGPLLVGGKAGVVQPAQA-AGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPAS-GKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVY 311
            S  ++    SR+ FL   A    +  FG T            +QPA A +G+SKV+++L GYGLPP+  VP GF+PL+E+YGK     K R  +LV F +P  WVV  PS D NGE+GT+ AGDY KGD+A F+V   P     +  +  + F + + ++IGQK +N+YQNFKV K  P  K   G  Y + +FKY+LLTGAGF VDRKGVAS+T  G  V+ LW A+T+AR+KK   +   + DSFR Y
Sbjct:    7 SEDNLITEGSRRSFLSQAAITTGMACFGETLS----------LQPANAVSGVSKVDAKLRGYGLPPLGPVPDGFAPLLEIYGKG----KNRFPILVSFSHPITWVVQTPSNDVNGEDGTVQAGDYGKGDTATFFVYSDPGHVNDIATQPKELFEKALMKSIGQKGENMYQNFKVTKLTPVTKA--GQTYVMADFKYQLLTGAGFEVDRKGVASITSEGPAVEVLWAASTSARFKKTEPNLRNIVDSFRCY 240          
BLAST of EWM25129.1 vs. NCBI_GenBank
Match: gi|219112979|ref|XP_002186073.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582923|gb|ACI65543.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 205.682 bits (522), Expect = 7.951e-61
Identity = 120/264 (45.45%), Postives = 160/264 (60.61%), Query Frame = 0
Query:   57 KLFAEEPSSSSVCDSSSRQGFLQTLAGQAALVGFGMTAGPLLVGGKAGVVQPAQAA----GLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGK-LEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVY-DGI 314
            +L+A  P ++   D  SR+ FL      AAL   G   G     G   V  P  AA    G+ KVN++LAGYGLP + +VP G +PL+E+YGK       R  +LVQF YP  WVV+ PS + NGE+GT+ AG+Y KGD+A F++   P + K +  +S ++F + + R+IGQK  N+YQNFKV K  P  K  +G  Y I +FKY+LLTGAGF VDRKGVAS+T  G  V+ LW A+TA R+KK       +  SFR Y DG+
Sbjct:   48 RLWASSPGNN---DDDSRRDFLTRSLATAALASGGWFTGT----GVGYVADPPAAAWALTGVKKVNAKLAGYGLPLVSNVPDGLTPLLEIYGKGV----NRFPVLVQFNYPVTWVVTTPSNNVNGEDGTVQAGEYNKGDTATFFLYSEPGNIKDVTTQSKEFFEKALMRSIGQKGDNMYQNFKVTKLEPTVK--DGKPYMIADFKYQLLTGAGFEVDRKGVASITSQGDAVEVLWAASTAIRYKKTEETLRNIVASFRCYADGL 298          
BLAST of EWM25129.1 vs. NCBI_GenBank
Match: gi|397613888|gb|EJK62480.1| (hypothetical protein THAOC_16908 [Thalassiosira oceanica])

HSP 1 Score: 189.119 bits (479), Expect = 7.927e-55
Identity = 109/211 (51.66%), Postives = 136/211 (64.45%), Query Frame = 0
Query:  108 PAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESAD--YFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCI-TMADSFRVY-DGI 314
            PA A GL K N +L  YGLP +++VPG +S L E+YGK A     R  LLV F +P  WVV+ PS D NGE+GTI AG+Y KGD+A F+V   P  GK++ +S D  +F E +  AI QKS N+YQ+FKV K  P A G    +Y  V FKY LLTGAGF V+RKGVASVT VG  VQ LW A+ AAR++    D + T+  SF  Y DG+
Sbjct:   69 PAFAYGLGKANDKLKSYGLPGLVNVPGSYSALAEIYGKGA----NRSPLLVAFGFPIDWVVTLPSQDVNGEDGTIQAGEYAKGDTATFFVL--PNEGKVDIQSKDKKFFAEALIAAISQKSSNIYQDFKVTKMEPSADG----KYMYVNFKYTLLTGAGFEVERKGVASVTSVGNGVQLLWSASIAARYRAKTEDQLNTIVRSFVCYSDGL 269          
BLAST of EWM25129.1 vs. NCBI_GenBank
Match: gi|299472180|emb|CBN79683.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 186.808 bits (473), Expect = 1.056e-53
Identity = 108/249 (43.37%), Postives = 149/249 (59.84%), Query Frame = 0
Query:   72 SSRQGFLQTLAGQA-ALVGFGMTA-GPLLVGGKAGVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKK-----ERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDG 313
            S R+G   +   ++ AL  FG    G ++VG   GV  PA A  +++ N  L+ Y LPP++DVPGGF+ L+E YGK    K       R+ +LV + YP  W+V +P+ D N E GT+S GDY +GDSA  +V      G     S D    V+K+A+ QK +N +Q+FK+   + G    NG +Y I +F+YELLTGAGFTV+RKGVASVTQ+G +V  +  ATTA R K +      +A SFRVY+G
Sbjct:   49 SDREGLASSACSRSEALSTFGAAVLGAVVVG--TGVPAPASAGSVAEANKRLSEYNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLIGGSSLSSKDTMEGVLKKALSQKGENQFQSFKLKSVKDGETDFNGNKYYIADFQYELLTGAGFTVERKGVASVTQIGNSVNAVVGATTANRAKTVKPQLQEIARSFRVYEG 295          
BLAST of EWM25129.1 vs. NCBI_GenBank
Match: gi|676397741|ref|XP_009042148.1| (expressed protein [Aureococcus anophagefferens] >gi|323447220|gb|EGB03155.1| expressed protein [Aureococcus anophagefferens])

HSP 1 Score: 176.792 bits (447), Expect = 1.906e-50
Identity = 101/245 (41.22%), Postives = 147/245 (60.00%), Query Frame = 0
Query:   71 SSSRQGFLQTLAGQAALVGFGMTA-GPLLVGGKAGVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDGI 314
            S +R+G    LAG A+LV  G+ +  P           PA A  L+K N +L   GLPP+  +P GFSP++        +  + ++L+VQF +P+ W+V KPS++ NGE GT+SAGDY KGDSAA YV + P  G        ++ +++ + + QK  N +QNF+V    PG+  A      +V+F+YELLTGAGFTV+R+GVA+V+ V    Q L   TT+AR+KK+  +   + DSFRVYD +
Sbjct:   27 SVARRG---ALAGGASLVAAGLVSLAP----------APALAYDLAKYNRKLDKLGLPPVAGIPDGFSPVLS-------SVNQDQSLIVQFNHPNAWLVVKPSVNTNGESGTVSAGDYGKGDSAALYVSDLPPGGDKA-----FYAKLIAKGLAQKGDNQFQNFRVRAVSPGSPNA------VVDFEYELLTGAGFTVERRGVAAVSGVAGKSQALLAVTTSARYKKLEPELRKIVDSFRVYDKV 240          
BLAST of EWM25129.1 vs. NCBI_GenBank
Match: gi|223995569|ref|XP_002287458.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976574|gb|EED94901.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 174.866 bits (442), Expect = 6.201e-49
Identity = 111/273 (40.66%), Postives = 148/273 (54.21%), Query Frame = 0
Query:   71 SSSRQGFLQTLAGQAALVGFGMTAGPLLVGGKAGVVQPAQAAGLSKVNSELAG------------------------YGLPPILDVPGGFSPLVEVYGKAAGAKKERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQ---ESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWK-KIGNDCITMADSFRVY-DGI 314
            ++SR+GF+  +A  +A V  G+   P           PA A G+ K N  LA                         +GLPP+   P GF+ L E+YGK     + R  LLV F +P  WVV+ PS D NGE+GTI AG+Y KGD+A F+V   P  GK+E    +  ++F   +  AI QK  N+YQ+FK+ K  P +   +  +Y +V+FKY LLTGAGF V+RKGVASVT VG  VQ LW A+ AAR+K K       +  SFR Y DG+
Sbjct:   49 TTSRRGFIDNMASMSAAVA-GIFMMP----------SPAMAYGIKKSNERLASERFAMINVNVNNPLIKLISLHTISFGLPPLAKTPDGFTALAEIYGKG----RNRSPLLVTFGFPLDWVVTLPSQDVNGEDGTIQAGEYAKGDTATFFVV--PDQGKVENILDKDKEFFKSSLIAAISQKGNNIYQDFKITKLEPVS--VDNQKYMLVDFKYTLLTGAGFEVERKGVASVTSVGDGVQLLWSASIAARYKNKTEGSLRGIVQSFRCYADGL 302          
BLAST of EWM25129.1 vs. NCBI_GenBank
Match: gi|1072222222|gb|OEU06990.1| (hypothetical protein FRACYDRAFT_252622 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 167.933 bits (424), Expect = 2.823e-46
Identity = 95/213 (44.60%), Postives = 125/213 (58.69%), Query Frame = 0
Query:  108 PAQAA-GLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPAS-GKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANG---AQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVY-DGI 314
            PA AA G  K+N+ L  YGLP I+++P G  PL+EVYGK     K R  LLV   +P  WVV  PS D NGE+GT+ AG+Y KGD+A F++ E       +       + +V+  AI QK  N+YQ+FKV+K  P           +Y I +FKY LLTGAGF V+R+GVAS+T  G  V+ LW A+T  R+KK       +  SFR Y DG+
Sbjct:   77 PANAASGADKINARLRSYGLPSIVNIPSGMKPLLEVYGKG----KNRFPLLVLMNHPLTWVVQLPSNDVNGEDGTVQAGEYAKGDTATFFLYEPEGHIDNIYDVDKKLYEKVLIAAISQKGGNMYQDFKVIKSTPQVDNTAAYGDRKYVICDFKYTLLTGAGFEVERRGVASLTSEGPAVEALWAASTRERFKKTETTLRDIVSSFRCYGDGV 285          
The following BLAST results are available for this feature:
BLAST of EWM25129.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106767|gb|EWM25129.1|0.000e+0100.00hypothetical protein Naga_100016g30 [Nannochlorops... [more]
gi|553196147|ref|XP_005856277.1|0.000e+0100.00hypothetical protein NGA_2003000, partial [Nannoch... [more]
gi|1210530392|dbj|GAX10976.1|2.161e-6143.01hypothetical protein FisN_2Lh506 [Fistulifera sola... [more]
gi|1210528332|dbj|GAX13021.1|3.207e-6145.20hypothetical protein FisN_2Hh506 [Fistulifera sola... [more]
gi|219112979|ref|XP_002186073.1|7.951e-6145.45predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397613888|gb|EJK62480.1|7.927e-5551.66hypothetical protein THAOC_16908 [Thalassiosira oc... [more]
gi|299472180|emb|CBN79683.1|1.056e-5343.37conserved unknown protein [Ectocarpus siliculosus][more]
gi|676397741|ref|XP_009042148.1|1.906e-5041.22expressed protein [Aureococcus anophagefferens] >g... [more]
gi|223995569|ref|XP_002287458.1|6.201e-4940.66predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072222222|gb|OEU06990.1|2.823e-4644.60hypothetical protein FRACYDRAFT_252622 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5578rna5578Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications