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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100016g34.2955.mrna |
| Orig protein id | gnl|cribi|Naga_100016g34.2955 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:316322..318707 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5574 ID=rna5574|Name=rna5574|organism=Nannochloropsis gaditana|type=mRNA|length=2306bp
CCCGGGAGCGATATCTCGATGACTTTGCCGCCTGATGACTTTTTGATTTT
CTTTGGTCCGCCCATGTCGTCACATCGTTTCTGATGCACCATTCGGTTGT
TCCCCCGAGACATATGCTCGCAAGCTATTTATATTATTTGCGCGGTAGTG
CGATAGTGATTTTAAACCATCATGTCCCTTTTGTGTGAAGGGCGATGTCG
TCTTCTCAGCATCCACAACCTAAAATATTTCTACTAGAGGGCCCCTACAT
GTGATCGACAACTGTCAGTGGTAGTCATGGCGGACTTTTGTGATCTCACT
GAGGACTTGGCTTCGCCGGTAAAGGCCCATGGCCAAGAAACAGTAATCCT
CAAAGACGATCAGGACGACGAGGACAACTTGCTGAACGACCCATTTGAGG
CTGTAGGGTTGCCGGCCCCTCCCATAGACGTCTCCACAAGTTCTTTGACA
CAGACAAGTGATTTTATCGTCCGCTCATGTCGGATGGCAAGCAGAGAAGA
GGAGGATGAGAGGGGGGAAAGAGGAAATGACAAGTTCCAGGGCGGGGCGG
AGCACACGCGAGGAGTTTCCACATCGCATGAGAGGAGAATTCTATCCACG
TCTTTGAACGGAAGGTCTGATGAGCACATCAGTAGGGTAAGAAAAGAGAG
AAGAGCGGCGGTCAAGGCAGAACGGGAAGCAAAACAGGTGGAGGAACGGA
TAAGAAAAGCTCGCGCAAAGCTGATATGCGACTCGCAGCGTGGCTTGTAC
AAACATGAAGAAATTGTCATGGTCGTTGAAAAGCGGCTCCGACATACACC
CTTGGGTGAAGTCATTGCCGACATCAGACGCAGCGAAGAATTCAAGTCAA
AGCAAATTTTCGTCGCGGGGCCGGGGTGTGCAGAGGAGGAGGATGAAATG
CCTGAGGCGGCTTGTTACCACCCTGGACTGATTATGTGGGCCCGCATGCC
CAAGCCGCTGTGGGATAGCGAGGAAGAATGCCCTCGGCATAGTGGTCCGT
TTGTGGAGCAGCTAGGACTGGTAATAGTAGTATGGGACGCTGGCGAATTT
TGCGACAAGCTGGCTGTGGATGCGCGAGGCATTTGTCGGAGAAGGACCGT
CGGAGACAGTCGCATCGAAACGGTCGGAACCGTCGTTGGCAGTTACGACA
CCCTTCAGCACGCCATTCAAAGTATCCGGCTAAGCCCAGGGATACCTGCA
GACTCTCGGGTTGTGTTGGTTTTGCAGGGTGTGAAAGCAGAGATCGCTTC
CCGGTGGAGGCAGAGGGGTGGAGGAGCCGTTGAGCAGGGCGCGCGCCTGA
CAATGGACGACTACGCCGATGCACTCGTGTGGATGCTTCTGGCTGAGGGC
ATCGAGTACAAGGAGACCAAGGACGCAGCAGAAACGGGAACGTACCTGCG
AGACGTAACGCGCGCCTTGGCAGAGGTGCCCTTTCGTGACACGGCCACGG
AGTTGAGCAGCGCCGCCAAGGGAAAGGCTATCGTCAATACAGGTCTTGGA
GGGAATAGGGATGAAGCCCTGGTTTTTGCCAGCAGCACGCAGGGCTTGAG
CCAGGCTGACAAAGTGGCCACAGCATGGGCGCGCCAGCTCGAGGTCGTCC
CCGGCATGAGTGATACAAAAGCGCTGCACATCGTCAATAATCACCACGGG
ACGCTTCGAAGCCTACTCGATGTGTACCAGGACCCCAAGTACTCCGAGGA
AGAGAAAATGAACTGGCTTGCGGACAAGATGGAGAGTGTGTCGGGAACGA
GGGTAAGTGCACTGAGATGTCTCTGAGGTTTATGCTCCTACTTCTGTCCT
TTTTACACACCGTTATTTGACTCCTTCCTCGTGACACTTGCATTATAGTC
CGTTCCGCGTTACTTTATTCATTGCTTTGCTTTTTTCGGGCTCAATTGCC
AGAAATAATGATAATAATGACGACAAATAAGCTTTGTTTTGCCTTGCATC
ACTCATTCGTAGAGTCTCTTTATTTAGATGCTTTCTAAATGTATTTCCTT
TTTCAACTCCGAAGGCCCCGAAACAGTTTAAAAGCCTCTCCATGAAGATC
TACCAATGCTTGACCGCACACGAGCCCCAATCCCTAATAAATGAATGTGG
AGACAACAATAAAGGGAAAAGAAAATAACGCTCCTGGAGGGAGTTCATGG
GCGAAAGAGCTCATGAGAGACAGGGGCCACGGACATCAAACGAGGGAGAT
GGATTACAGAATTTTCACCAGTAAATAAAATTGAGAATTTTGAACACATT
TTAAAGTTATTAATCCATATTCTTTCTGTAAAATTTTAAGCCTCGAGATC
TCCCGC back to topprotein sequence of rna5574 >rna5574-protein ID=rna5574-protein|Name=rna5574|organism=Nannochloropsis gaditana|type=polypeptide|length=529bp
MADFCDLTEDLASPVKAHGQETVILKDDQDDEDNLLNDPFEAVGLPAPPI
DVSTSSLTQTSDFIVRSCRMASREEEDERGERGNDKFQGGAEHTRGVSTS
HERRILSTSLNGRSDEHISRVRKERRAAVKAEREAKQVEERIRKARAKLI
CDSQRGLYKHEEIVMVVEKRLRHTPLGEVIADIRRSEEFKSKQIFVAGPG
CAEEEDEMPEAACYHPGLIMWARMPKPLWDSEEECPRHSGPFVEQLGLVI
VVWDAGEFCDKLAVDARGICRRRTVGDSRIETVGTVVGSYDTLQHAIQSI
RLSPGIPADSRVVLVLQGVKAEIASRWRQRGGGAVEQGARLTMDDYADAL
VWMLLAEGIEYKETKDAAETGTYLRDVTRALAEVPFRDTATELSSAAKGK
AIVNTGLGGNRDEALVFASSTQGLSQADKVATAWARQLEVVPGMSDTKAL
HIVNNHHGTLRSLLDVYQDPKYSEEEKMNWLADKMESVSGTRAPKQFKSL
SMKIYQCLTAHEPQSLINECGDNNKGKRK back to topmRNA from alignment at CM002466.1:316322..318707- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5574 ID=rna5574|Name=rna5574|organism=Nannochloropsis gaditana|type=mRNA|length=2386bp|location=Sequence derived from alignment at CM002466.1:316322..318707- (Nannochloropsis gaditana)
CCTGATGACTTTTTGATTTTCTTTGGTCCGCCCATGTCGTCACATCGTTT
CTGATGCACCATTCGGTTGTTCCCCCGAGACATATGCTCGCAAGCTATTT
ATATTATTTGCGCGGTAGTGCGATAGTGATTTTAAACCATCATGTCCCTT
TTGTGTGAAGGGCGATGTCGTCTTCTCAGCATCCACAACCTAAAATATTT
CTACTAGAGGGCCCCTACATGTGATCGACAACTGTCAGTGGTAGTCATGG
CGGACTTTTGTGATCTCACTGAGGACTTGGCTTCGCCGGTAAAGGCCCAT
GGCCAAGAAACAGTAATCCTCAAAGACGATCAGGACGACGAGGACAACTT
GCTGAACGACCCATTTGAGGCTGTAGGGTTGCCGGCCCCTCCCATAGACG
TCTCCACAAGTTCTTTGACACAGACAAGTGATTTTATCGTCCGCTCATGT
CGGATGGCAAGCAGAGAAGAGGAGGATGAGAGGGGGGAAAGAGGAAATGA
CAAGTTCCAGGGCGGGGCGGAGCACACGCGAGGAGTTTCCACATCGCATG
AGAGGAGAATTCTATCCACGTCTTTGAACGGAAGGTCTGATGAGCACATC
AGTAGGGTAAGAAAAGAGAGAAGAGCGGCGGTCAAGGCAGAACGGGAAGC
AAAACAGGTGGAGGAACGGATAAGAAAAGCTCGCGCAAAGCTGATATGCG
ACTCGCAGCGTGGCTTGTACAAACATGAAGAAATTGTCATGGTCGTTGAA
AAGCGGCTCCGACATACACCCTTGGGTGAAGTCATTGCCGACATCAGACG
CAGCGAAGAATTCAAGTCAAAGCAAATTTTCGTCGCGGGGCCGGGGTGTG
CAGAGGAGGAGGATGAAATGCCTGAGGCGGCTTGTTACCACCCTGGACTG
ATTATGTGGGCCCGCATGCCCAAGCCGCTGTGGGATAGCGAGGAAGAATG
CCCTCGGCATAGTGGTCCGTTTGTGGAGCAGCTAGGACTGGTAATAGTAG
TATGGGACGCTGGCGAATTTTGCGACAAGCTGGCTGTGGATGCGCGAGGC
ATTTGTCGGAGAAGGACCGTCGGAGACAGTCGCATCGAAACGGTCGGAAC
CGTCGTTGGCAGTTACGACACCCTTCAGCACGCCATTCAAAGTATCCGGC
TAAGCCCAGGGATACCTGCAGACTCTCGGGTTGTGTTGGTTTTGCAGGGT
GTGAAAGCAGAGATCGCTTCCCGGTGGAGGCAGAGGGGTGGAGGAGCCGT
TGAGCAGGGCGCGCGCCTGACAATGGACGACTACGCCGATGCACTCGTGT
GGATGCTTCTGGCTGAGGGCATCGAGTACAAGGAGACCAAGGACGCAGCA
GAAACGGGAACGTACCTGCGAGACGTAACGCGCGCCTTGGCAGAGGTGCC
CTTTCGTGACACGGCCACGGAGTTGAGCAGCGCCGCCAAGGGAAAGGCTA
TCGTCAATACAGGTCTTGGAGGGAATAGGGATGAAGCCCTGGTTTTTGCC
AGCAGCACGCAGGGCTTGAGCCAGGCTGACAAAGTGGCCACAGCATGGGC
GCGCCAGCTCGAGGTCGTCCCCGGCATGAGTGATGTAAGTGTGGGAGTGC
GTGCCCCGTTCGTGCGTCTCGTTCTTTCCCGTGGTTTCCTCCGCTCGTGA
ATATAATTGGAATCTGATGATATATTCACGGTACGAATTGGCAGACAAAA
GCGCTGCACATCGTCAATAATCACCACGGGACGCTTCGAAGCCTACTCGA
TGTGTACCAGGACCCCAAGTACTCCGAGGAAGAGAAAATGAACTGGCTTG
CGGACAAGATGGAGAGTGTGTCGGGAACGAGGGTAAGTGCACTGAGATGT
CTCTGAGGTTTATGCTCCTACTTCTGTCCTTTTTACACACCGTTATTTGA
CTCCTTCCTCGTGACACTTGCATTATAGTCCGTTCCGCGTTACTTTATTC
ATTGCTTTGCTTTTTTCGGGCTCAATTGCCAGAAATAATGATAATAATGA
CGACAAATAAGCTTTGTTTTGCCTTGCATCACTCATTCGTAGAGTCTCTT
TATTTAGATGCTTTCTAAATGTATTTCCTTTTTCAACTCCGAAGGCCCCG
AAACAGTTTAAAAGCCTCTCCATGAAGATCTACCAATGCTTGACCGCACA
CGAGCCCCAATCCCTAATAAATGAATGTGGAGACAACAATAAAGGGAAAA
GAAAATAACGCTCCTGGAGGGAGTTCATGGGCGAAAGAGCTCATGAGAGA
CAGGGGCCACGGACATCAAACGAGGGAGATGGATTACAGAATTTTCACCA
GTAAATAAAATTGAGAATTTTGAACACATTTTAAAGTTATTAATCCATAT
TCTTTCTGTAAAATTTTAAGCCTCGAGATCTCCCGC back to topCoding sequence (CDS) from alignment at CM002466.1:316322..318707- >rna5574 ID=rna5574|Name=rna5574|organism=Nannochloropsis gaditana|type=CDS|length=4770bp|location=Sequence derived from alignment at CM002466.1:316322..318707- (Nannochloropsis gaditana)
GCCCCGAAACAGTTTAAAAGCCTCTCCATGAAGATCTACCAATGCTTGAC
CGCACACGAGCCCCAATCCCTAATAAATGAATGTGGAGACAACAATAAAG
GGAAAAGAAAATAAACAAAAGCGCTGCACATCGTCAATAATCACCACGGG
ACGCTTCGAAGCCTACTCGATGTGTACCAGGACCCCAAGTACTCCGAGGA
AGAGAAAATGAACTGGCTTGCGGACAAGATGGAGAGTGTGTCGGGAACGA
GGATGGCGGACTTTTGTGATCTCACTGAGGACTTGGCTTCGCCGGTAAAG
GCCCATGGCCAAGAAACAGTAATCCTCAAAGACGATCAGGACGACGAGGA
CAACTTGCTGAACGACCCATTTGAGGCTGTAGGGTTGCCGGCCCCTCCCA
TAGACGTCTCCACAAGTTCTTTGACACAGACAAGTGATTTTATCGTCCGC
TCATGTCGGATGGCAAGCAGAGAAGAGGAGGATGAGAGGGGGGAAAGAGG
AAATGACAAGTTCCAGGGCGGGGCGGAGCACACGCGAGGAGTTTCCACAT
CGCATGAGAGGAGAATTCTATCCACGTCTTTGAACGGAAGGTCTGATGAG
CACATCAGTAGGGTAAGAAAAGAGAGAAGAGCGGCGGTCAAGGCAGAACG
GGAAGCAAAACAGGTGGAGGAACGGATAAGAAAAGCTCGCGCAAAGCTGA
TATGCGACTCGCAGCGTGGCTTGTACAAACATGAAGAAATTGTCATGGTC
GTTGAAAAGCGGCTCCGACATACACCCTTGGGTGAAGTCATTGCCGACAT
CAGACGCAGCGAAGAATTCAAGTCAAAGCAAATTTTCGTCGCGGGGCCGG
GGTGTGCAGAGGAGGAGGATGAAATGCCTGAGGCGGCTTGTTACCACCCT
GGACTGATTATGTGGGCCCGCATGCCCAAGCCGCTGTGGGATAGCGAGGA
AGAATGCCCTCGGCATAGTGGTCCGTTTGTGGAGCAGCTAGGACTGGTAA
TAGTAGTATGGGACGCTGGCGAATTTTGCGACAAGCTGGCTGTGGATGCG
CGAGGCATTTGTCGGAGAAGGACCGTCGGAGACAGTCGCATCGAAACGGT
CGGAACCGTCGTTGGCAGTTACGACACCCTTCAGCACGCCATTCAAAGTA
TCCGGCTAAGCCCAGGGATACCTGCAGACTCTCGGGTTGTGTTGGTTTTG
CAGGGTGTGAAAGCAGAGATCGCTTCCCGGTGGAGGCAGAGGGGTGGAGG
AGCCGTTGAGCAGGGCGCGCGCCTGACAATGGACGACTACGCCGATGCAC
TCGTGTGGATGCTTCTGGCTGAGGGCATCGAGTACAAGGAGACCAAGGAC
GCAGCAGAAACGGGAACGTACCTGCGAGACGTAACGCGCGCCTTGGCAGA
GGTGCCCTTTCGTGACACGGCCACGGAGTTGAGCAGCGCCGCCAAGGGAA
AGGCTATCGTCAATACAGGTCTTGGAGGGAATAGGGATGAAGCCCTGGTT
TTTGCCAGCAGCACGCAGGGCTTGAGCCAGGCTGACAAAGTGGCCACAGC
ATGGGCGCGCCAGCTCGAGGTCGTCCCCGGCATGAGTGATGCCCCGAAAC
AGTTTAAAAGCCTCTCCATGAAGATCTACCAATGCTTGACCGCACACGAG
CCCCAATCCCTAATAAATGAATGTGGAGACAACAATAAAGGGAAAAGAAA
ATAAACAAAAGCGCTGCACATCGTCAATAATCACCACGGGACGCTTCGAA
GCCTACTCGATGTGTACCAGGACCCCAAGTACTCCGAGGAAGAGAAAATG
AACTGGCTTGCGGACAAGATGGAGAGTGTGTCGGGAACGAGGATGGCGGA
CTTTTGTGATCTCACTGAGGACTTGGCTTCGCCGGTAAAGGCCCATGGCC
AAGAAACAGTAATCCTCAAAGACGATCAGGACGACGAGGACAACTTGCTG
AACGACCCATTTGAGGCTGTAGGGTTGCCGGCCCCTCCCATAGACGTCTC
CACAAGTTCTTTGACACAGACAAGTGATTTTATCGTCCGCTCATGTCGGA
TGGCAAGCAGAGAAGAGGAGGATGAGAGGGGGGAAAGAGGAAATGACAAG
TTCCAGGGCGGGGCGGAGCACACGCGAGGAGTTTCCACATCGCATGAGAG
GAGAATTCTATCCACGTCTTTGAACGGAAGGTCTGATGAGCACATCAGTA
GGGTAAGAAAAGAGAGAAGAGCGGCGGTCAAGGCAGAACGGGAAGCAAAA
CAGGTGGAGGAACGGATAAGAAAAGCTCGCGCAAAGCTGATATGCGACTC
GCAGCGTGGCTTGTACAAACATGAAGAAATTGTCATGGTCGTTGAAAAGC
GGCTCCGACATACACCCTTGGGTGAAGTCATTGCCGACATCAGACGCAGC
GAAGAATTCAAGTCAAAGCAAATTTTCGTCGCGGGGCCGGGGTGTGCAGA
GGAGGAGGATGAAATGCCTGAGGCGGCTTGTTACCACCCTGGACTGATTA
TGTGGGCCCGCATGCCCAAGCCGCTGTGGGATAGCGAGGAAGAATGCCCT
CGGCATAGTGGTCCGTTTGTGGAGCAGCTAGGACTGGTAATAGTAGTATG
GGACGCTGGCGAATTTTGCGACAAGCTGGCTGTGGATGCGCGAGGCATTT
GTCGGAGAAGGACCGTCGGAGACAGTCGCATCGAAACGGTCGGAACCGTC
GTTGGCAGTTACGACACCCTTCAGCACGCCATTCAAAGTATCCGGCTAAG
CCCAGGGATACCTGCAGACTCTCGGGTTGTGTTGGTTTTGCAGGGTGTGA
AAGCAGAGATCGCTTCCCGGTGGAGGCAGAGGGGTGGAGGAGCCGTTGAG
CAGGGCGCGCGCCTGACAATGGACGACTACGCCGATGCACTCGTGTGGAT
GCTTCTGGCTGAGGGCATCGAGTACAAGGAGACCAAGGACGCAGCAGAAA
CGGGAACGTACCTGCGAGACGTAACGCGCGCCTTGGCAGAGGTGCCCTTT
CGTGACACGGCCACGGAGTTGAGCAGCGCCGCCAAGGGAAAGGCTATCGT
CAATACAGGTCTTGGAGGGAATAGGGATGAAGCCCTGGTTTTTGCCAGCA
GCACGCAGGGCTTGAGCCAGGCTGACAAAGTGGCCACAGCATGGGCGCGC
CAGCTCGAGGTCGTCCCCGGCATGAGTGATGCCCCGAAACAGTTTAAAAG
CCTCTCCATGAAGATCTACCAATGCTTGACCGCACACGAGCCCCAATCCC
TAATAAATGAATGTGGAGACAACAATAAAGGGAAAAGAAAATAAACAAAA
GCGCTGCACATCGTCAATAATCACCACGGGACGCTTCGAAGCCTACTCGA
TGTGTACCAGGACCCCAAGTACTCCGAGGAAGAGAAAATGAACTGGCTTG
CGGACAAGATGGAGAGTGTGTCGGGAACGAGGATGGCGGACTTTTGTGAT
CTCACTGAGGACTTGGCTTCGCCGGTAAAGGCCCATGGCCAAGAAACAGT
AATCCTCAAAGACGATCAGGACGACGAGGACAACTTGCTGAACGACCCAT
TTGAGGCTGTAGGGTTGCCGGCCCCTCCCATAGACGTCTCCACAAGTTCT
TTGACACAGACAAGTGATTTTATCGTCCGCTCATGTCGGATGGCAAGCAG
AGAAGAGGAGGATGAGAGGGGGGAAAGAGGAAATGACAAGTTCCAGGGCG
GGGCGGAGCACACGCGAGGAGTTTCCACATCGCATGAGAGGAGAATTCTA
TCCACGTCTTTGAACGGAAGGTCTGATGAGCACATCAGTAGGGTAAGAAA
AGAGAGAAGAGCGGCGGTCAAGGCAGAACGGGAAGCAAAACAGGTGGAGG
AACGGATAAGAAAAGCTCGCGCAAAGCTGATATGCGACTCGCAGCGTGGC
TTGTACAAACATGAAGAAATTGTCATGGTCGTTGAAAAGCGGCTCCGACA
TACACCCTTGGGTGAAGTCATTGCCGACATCAGACGCAGCGAAGAATTCA
AGTCAAAGCAAATTTTCGTCGCGGGGCCGGGGTGTGCAGAGGAGGAGGAT
GAAATGCCTGAGGCGGCTTGTTACCACCCTGGACTGATTATGTGGGCCCG
CATGCCCAAGCCGCTGTGGGATAGCGAGGAAGAATGCCCTCGGCATAGTG
GTCCGTTTGTGGAGCAGCTAGGACTGGTAATAGTAGTATGGGACGCTGGC
GAATTTTGCGACAAGCTGGCTGTGGATGCGCGAGGCATTTGTCGGAGAAG
GACCGTCGGAGACAGTCGCATCGAAACGGTCGGAACCGTCGTTGGCAGTT
ACGACACCCTTCAGCACGCCATTCAAAGTATCCGGCTAAGCCCAGGGATA
CCTGCAGACTCTCGGGTTGTGTTGGTTTTGCAGGGTGTGAAAGCAGAGAT
CGCTTCCCGGTGGAGGCAGAGGGGTGGAGGAGCCGTTGAGCAGGGCGCGC
GCCTGACAATGGACGACTACGCCGATGCACTCGTGTGGATGCTTCTGGCT
GAGGGCATCGAGTACAAGGAGACCAAGGACGCAGCAGAAACGGGAACGTA
CCTGCGAGACGTAACGCGCGCCTTGGCAGAGGTGCCCTTTCGTGACACGG
CCACGGAGTTGAGCAGCGCCGCCAAGGGAAAGGCTATCGTCAATACAGGT
CTTGGAGGGAATAGGGATGAAGCCCTGGTTTTTGCCAGCAGCACGCAGGG
CTTGAGCCAGGCTGACAAAGTGGCCACAGCATGGGCGCGCCAGCTCGAGG
TCGTCCCCGGCATGAGTGAT back to top
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