rna5573, rna5573 (mRNA) Nannochloropsis gaditana

Overview
Namerna5573
Unique Namerna5573
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length921
Alignment locationCM002466.1:316322..318737 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g34.2956.mrna
Orig protein idgnl|cribi|Naga_100016g34.2956
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:316322..318737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g34gene5386Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5573rna5573-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25147.1cds5559Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5573 ID=rna5573|Name=rna5573|organism=Nannochloropsis gaditana|type=mRNA|length=921bp
CCCGCATCGATCGTCAAATGGTTAGAAGCTGTAAAGGTGAAGGCCTAATT
TGAATTATACAAGGGTGTTTTAGCTTGTTTGGAGATGAACGCGGATTTCT
TAAGTTGGTGGATGAATGGGAATATGACAAGATATTAAAGGCCTCATGTC
GGCATGGCATGCCTGTTTATGCGTACATTAAAACACACAAGCAAACAGGA
CAAGCATGGCGCTAATCCTGAACCGCCTCTACTTACCAGGAGTATTCATG
ACAGCACTATGCGTGATTTTTGCCCTTGGTGCCGTATTGACAGCGGAATT
TGCAAGCGGGATGGCCATGGTAAGCGGCTCGGACGGCTTTGCGAAAGTCA
ATTTGGGCCTCTGGCATGGAATAGCTCACATCGCAGGCCGAAGACAAGTT
TTTCGACTGGAATGGTGTGACGCGAGCAGTCCCTCATTTGACGGCCCTTA
CTGTGCGCAGCTGCAAGTCTGTCGAGTAGCAGCCTGTGCGGGTGTCTGCT
TGCTTGTCGCCGTGTCGGTCCTGCTCGCCCTTCTGGCTACGAACGCAGTC
CGCACACGTTTTGAAGCTCCATTGACCAAAATAGTTGCAGGAACTTTCTC
TATGGCCGCATTATGTTTCGGGACGTGTTTGGGCGTGTGGGTGGCACTTG
TCGTATCGTTGAGCACTAAGGAAGAAGACAGCAAAGCAAGGCTTTCTATT
GGAATGTCGTGGCTCGCCGAAGGTGGAGCCTTTATCCTCGCATTTCTTCT
GGCAATTAAGATGCTTCAGACAGCTACGAGAATAGAGGGGGAAGCCAGAA
TAGCAACTGACATGAACAAGCGCGCACGAAACGGCACGCAGACTAGTTAT
CCGAACAAACCTGAGAAGCCGAGAAGCAGACCGTCACATGGCGCGGGAGA
TCTCGAGGCTTAAAATTTTAC
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protein sequence of rna5573

>rna5573-protein ID=rna5573-protein|Name=rna5573|organism=Nannochloropsis gaditana|type=polypeptide|length=499bp
MADFCDLTEDLASPVKAHGQETVILKDDQDDEDNLLNDPFEAVGLPAPPI
DVSTSSLTQTSDFIVRSCRMASREEEDERGERGNDKFQGGAEHTRGVSTS
HERRILSTSLNGRSDEHISRVRKERRAAVKAEREAKQVEERIRKARAKLI
CDSQRGLYKHEEIVMVVEKRLRHTPLGEVIADIRRSEEFKSKQIFVAGPG
CAEEEDEMPEAACYHPGLIMWARMPKPLWDSEEECPRHSGPFVEQLGLVI
VVWDAGEFCDKLAVDARGICRRRTVGDSRIETVGTVVGSYDTLQHAIQSI
RLSPGIPADSRVVLVLQGVKAEIASRWRQRGGGAVEQGARLTMDDYADAL
VWMLLAEGIEYKETKDAAETGTYLRDVTRALAEVPFRDTATELSSAAKGK
AIVNTGLGGNRDEALVFASSTQGLSQADKVATAWARQLEVVPGMSDTKAL
HIVNNHHGTLRSLLDVYQDPKYSEEEKMNWLADKMESVSGTRVSALRCL
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mRNA from alignment at CM002466.1:316322..318737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5573 ID=rna5573|Name=rna5573|organism=Nannochloropsis gaditana|type=mRNA|length=2416bp|location=Sequence derived from alignment at CM002466.1:316322..318737- (Nannochloropsis gaditana)
CCCGGGAGCGATATCTCGATGACTTTGCCGCCTGATGACTTTTTGATTTT
CTTTGGTCCGCCCATGTCGTCACATCGTTTCTGATGCACCATTCGGTTGT
TCCCCCGAGACATATGCTCGCAAGCTATTTATATTATTTGCGCGGTAGTG
CGATAGTGATTTTAAACCATCATGTCCCTTTTGTGTGAAGGGCGATGTCG
TCTTCTCAGCATCCACAACCTAAAATATTTCTACTAGAGGGCCCCTACAT
GTGATCGACAACTGTCAGTGGTAGTCATGGCGGACTTTTGTGATCTCACT
GAGGACTTGGCTTCGCCGGTAAAGGCCCATGGCCAAGAAACAGTAATCCT
CAAAGACGATCAGGACGACGAGGACAACTTGCTGAACGACCCATTTGAGG
CTGTAGGGTTGCCGGCCCCTCCCATAGACGTCTCCACAAGTTCTTTGACA
CAGACAAGTGATTTTATCGTCCGCTCATGTCGGATGGCAAGCAGAGAAGA
GGAGGATGAGAGGGGGGAAAGAGGAAATGACAAGTTCCAGGGCGGGGCGG
AGCACACGCGAGGAGTTTCCACATCGCATGAGAGGAGAATTCTATCCACG
TCTTTGAACGGAAGGTCTGATGAGCACATCAGTAGGGTAAGAAAAGAGAG
AAGAGCGGCGGTCAAGGCAGAACGGGAAGCAAAACAGGTGGAGGAACGGA
TAAGAAAAGCTCGCGCAAAGCTGATATGCGACTCGCAGCGTGGCTTGTAC
AAACATGAAGAAATTGTCATGGTCGTTGAAAAGCGGCTCCGACATACACC
CTTGGGTGAAGTCATTGCCGACATCAGACGCAGCGAAGAATTCAAGTCAA
AGCAAATTTTCGTCGCGGGGCCGGGGTGTGCAGAGGAGGAGGATGAAATG
CCTGAGGCGGCTTGTTACCACCCTGGACTGATTATGTGGGCCCGCATGCC
CAAGCCGCTGTGGGATAGCGAGGAAGAATGCCCTCGGCATAGTGGTCCGT
TTGTGGAGCAGCTAGGACTGGTAATAGTAGTATGGGACGCTGGCGAATTT
TGCGACAAGCTGGCTGTGGATGCGCGAGGCATTTGTCGGAGAAGGACCGT
CGGAGACAGTCGCATCGAAACGGTCGGAACCGTCGTTGGCAGTTACGACA
CCCTTCAGCACGCCATTCAAAGTATCCGGCTAAGCCCAGGGATACCTGCA
GACTCTCGGGTTGTGTTGGTTTTGCAGGGTGTGAAAGCAGAGATCGCTTC
CCGGTGGAGGCAGAGGGGTGGAGGAGCCGTTGAGCAGGGCGCGCGCCTGA
CAATGGACGACTACGCCGATGCACTCGTGTGGATGCTTCTGGCTGAGGGC
ATCGAGTACAAGGAGACCAAGGACGCAGCAGAAACGGGAACGTACCTGCG
AGACGTAACGCGCGCCTTGGCAGAGGTGCCCTTTCGTGACACGGCCACGG
AGTTGAGCAGCGCCGCCAAGGGAAAGGCTATCGTCAATACAGGTCTTGGA
GGGAATAGGGATGAAGCCCTGGTTTTTGCCAGCAGCACGCAGGGCTTGAG
CCAGGCTGACAAAGTGGCCACAGCATGGGCGCGCCAGCTCGAGGTCGTCC
CCGGCATGAGTGATGTAAGTGTGGGAGTGCGTGCCCCGTTCGTGCGTCTC
GTTCTTTCCCGTGGTTTCCTCCGCTCGTGAATATAATTGGAATCTGATGA
TATATTCACGGTACGAATTGGCAGACAAAAGCGCTGCACATCGTCAATAA
TCACCACGGGACGCTTCGAAGCCTACTCGATGTGTACCAGGACCCCAAGT
ACTCCGAGGAAGAGAAAATGAACTGGCTTGCGGACAAGATGGAGAGTGTG
TCGGGAACGAGGGTAAGTGCACTGAGATGTCTCTGAGGTTTATGCTCCTA
CTTCTGTCCTTTTTACACACCGTTATTTGACTCCTTCCTCGTGACACTTG
CATTATAGTCCGTTCCGCGTTACTTTATTCATTGCTTTGCTTTTTTCGGG
CTCAATTGCCAGAAATAATGATAATAATGACGACAAATAAGCTTTGTTTT
GCCTTGCATCACTCATTCGTAGAGTCTCTTTATTTAGATGCTTTCTAAAT
GTATTTCCTTTTTCAACTCCGAAGGCCCCGAAACAGTTTAAAAGCCTCTC
CATGAAGATCTACCAATGCTTGACCGCACACGAGCCCCAATCCCTAATAA
ATGAATGTGGAGACAACAATAAAGGGAAAAGAAAATAACGCTCCTGGAGG
GAGTTCATGGGCGAAAGAGCTCATGAGAGACAGGGGCCACGGACATCAAA
CGAGGGAGATGGATTACAGAATTTTCACCAGTAAATAAAATTGAGAATTT
TGAACACATTTTAAAGTTATTAATCCATATTCTTTCTGTAAAATTTTAAG
CCTCGAGATCTCCCGC
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Coding sequence (CDS) from alignment at CM002466.1:316322..318737-

>rna5573 ID=rna5573|Name=rna5573|organism=Nannochloropsis gaditana|type=CDS|length=3000bp|location=Sequence derived from alignment at CM002466.1:316322..318737- (Nannochloropsis gaditana)
ACAAAAGCGCTGCACATCGTCAATAATCACCACGGGACGCTTCGAAGCCT
ACTCGATGTGTACCAGGACCCCAAGTACTCCGAGGAAGAGAAAATGAACT
GGCTTGCGGACAAGATGGAGAGTGTGTCGGGAACGAGGGTAAGTGCACTG
AGATGTCTCTGAATGGCGGACTTTTGTGATCTCACTGAGGACTTGGCTTC
GCCGGTAAAGGCCCATGGCCAAGAAACAGTAATCCTCAAAGACGATCAGG
ACGACGAGGACAACTTGCTGAACGACCCATTTGAGGCTGTAGGGTTGCCG
GCCCCTCCCATAGACGTCTCCACAAGTTCTTTGACACAGACAAGTGATTT
TATCGTCCGCTCATGTCGGATGGCAAGCAGAGAAGAGGAGGATGAGAGGG
GGGAAAGAGGAAATGACAAGTTCCAGGGCGGGGCGGAGCACACGCGAGGA
GTTTCCACATCGCATGAGAGGAGAATTCTATCCACGTCTTTGAACGGAAG
GTCTGATGAGCACATCAGTAGGGTAAGAAAAGAGAGAAGAGCGGCGGTCA
AGGCAGAACGGGAAGCAAAACAGGTGGAGGAACGGATAAGAAAAGCTCGC
GCAAAGCTGATATGCGACTCGCAGCGTGGCTTGTACAAACATGAAGAAAT
TGTCATGGTCGTTGAAAAGCGGCTCCGACATACACCCTTGGGTGAAGTCA
TTGCCGACATCAGACGCAGCGAAGAATTCAAGTCAAAGCAAATTTTCGTC
GCGGGGCCGGGGTGTGCAGAGGAGGAGGATGAAATGCCTGAGGCGGCTTG
TTACCACCCTGGACTGATTATGTGGGCCCGCATGCCCAAGCCGCTGTGGG
ATAGCGAGGAAGAATGCCCTCGGCATAGTGGTCCGTTTGTGGAGCAGCTA
GGACTGGTAATAGTAGTATGGGACGCTGGCGAATTTTGCGACAAGCTGGC
TGTGGATGCGCGAGGCATTTGTCGGAGAAGGACCGTCGGAGACAGTCGCA
TCGAAACGGTCGGAACCGTCGTTGGCAGTTACGACACCCTTCAGCACGCC
ATTCAAAGTATCCGGCTAAGCCCAGGGATACCTGCAGACTCTCGGGTTGT
GTTGGTTTTGCAGGGTGTGAAAGCAGAGATCGCTTCCCGGTGGAGGCAGA
GGGGTGGAGGAGCCGTTGAGCAGGGCGCGCGCCTGACAATGGACGACTAC
GCCGATGCACTCGTGTGGATGCTTCTGGCTGAGGGCATCGAGTACAAGGA
GACCAAGGACGCAGCAGAAACGGGAACGTACCTGCGAGACGTAACGCGCG
CCTTGGCAGAGGTGCCCTTTCGTGACACGGCCACGGAGTTGAGCAGCGCC
GCCAAGGGAAAGGCTATCGTCAATACAGGTCTTGGAGGGAATAGGGATGA
AGCCCTGGTTTTTGCCAGCAGCACGCAGGGCTTGAGCCAGGCTGACAAAG
TGGCCACAGCATGGGCGCGCCAGCTCGAGGTCGTCCCCGGCATGAGTGAT
ACAAAAGCGCTGCACATCGTCAATAATCACCACGGGACGCTTCGAAGCCT
ACTCGATGTGTACCAGGACCCCAAGTACTCCGAGGAAGAGAAAATGAACT
GGCTTGCGGACAAGATGGAGAGTGTGTCGGGAACGAGGGTAAGTGCACTG
AGATGTCTCTGAATGGCGGACTTTTGTGATCTCACTGAGGACTTGGCTTC
GCCGGTAAAGGCCCATGGCCAAGAAACAGTAATCCTCAAAGACGATCAGG
ACGACGAGGACAACTTGCTGAACGACCCATTTGAGGCTGTAGGGTTGCCG
GCCCCTCCCATAGACGTCTCCACAAGTTCTTTGACACAGACAAGTGATTT
TATCGTCCGCTCATGTCGGATGGCAAGCAGAGAAGAGGAGGATGAGAGGG
GGGAAAGAGGAAATGACAAGTTCCAGGGCGGGGCGGAGCACACGCGAGGA
GTTTCCACATCGCATGAGAGGAGAATTCTATCCACGTCTTTGAACGGAAG
GTCTGATGAGCACATCAGTAGGGTAAGAAAAGAGAGAAGAGCGGCGGTCA
AGGCAGAACGGGAAGCAAAACAGGTGGAGGAACGGATAAGAAAAGCTCGC
GCAAAGCTGATATGCGACTCGCAGCGTGGCTTGTACAAACATGAAGAAAT
TGTCATGGTCGTTGAAAAGCGGCTCCGACATACACCCTTGGGTGAAGTCA
TTGCCGACATCAGACGCAGCGAAGAATTCAAGTCAAAGCAAATTTTCGTC
GCGGGGCCGGGGTGTGCAGAGGAGGAGGATGAAATGCCTGAGGCGGCTTG
TTACCACCCTGGACTGATTATGTGGGCCCGCATGCCCAAGCCGCTGTGGG
ATAGCGAGGAAGAATGCCCTCGGCATAGTGGTCCGTTTGTGGAGCAGCTA
GGACTGGTAATAGTAGTATGGGACGCTGGCGAATTTTGCGACAAGCTGGC
TGTGGATGCGCGAGGCATTTGTCGGAGAAGGACCGTCGGAGACAGTCGCA
TCGAAACGGTCGGAACCGTCGTTGGCAGTTACGACACCCTTCAGCACGCC
ATTCAAAGTATCCGGCTAAGCCCAGGGATACCTGCAGACTCTCGGGTTGT
GTTGGTTTTGCAGGGTGTGAAAGCAGAGATCGCTTCCCGGTGGAGGCAGA
GGGGTGGAGGAGCCGTTGAGCAGGGCGCGCGCCTGACAATGGACGACTAC
GCCGATGCACTCGTGTGGATGCTTCTGGCTGAGGGCATCGAGTACAAGGA
GACCAAGGACGCAGCAGAAACGGGAACGTACCTGCGAGACGTAACGCGCG
CCTTGGCAGAGGTGCCCTTTCGTGACACGGCCACGGAGTTGAGCAGCGCC
GCCAAGGGAAAGGCTATCGTCAATACAGGTCTTGGAGGGAATAGGGATGA
AGCCCTGGTTTTTGCCAGCAGCACGCAGGGCTTGAGCCAGGCTGACAAAG
TGGCCACAGCATGGGCGCGCCAGCTCGAGGTCGTCCCCGGCATGAGTGAT
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Synonyms
Publications