EWM25147.1, cds5559 (CDS) Nannochloropsis gaditana

Overview
NameEWM25147.1
Unique Namecds5559
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:317124..318461 -
Alignment locationCM002466.1:316852..317013 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25147.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g34.2956.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:317124..318461 -
CM002466.1supercontigCM002466.1:316852..317013 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of EWM25147.1 vs. NCBI_GenBank
Match: gi|585106785|gb|EWM25147.1| (hypothetical protein Naga_100016g34 [Nannochloropsis gaditana])

HSP 1 Score: 1023.46 bits (2645), Expect = 0.000e+0
Identity = 499/499 (100.00%), Postives = 499/499 (100.00%), Query Frame = 0
Query:    1 MADFCDLTEDLASPVKAHGQETVILKDDQDDEDNLLNDPFEAVGLPAPPIDVSTSSLTQTSDFIVRSCRMASREEEDERGERGNDKFQGGAEHTRGVSTSHERRILSTSLNGRSDEHISRVRKERRAAVKAEREAKQVEERIRKARAKLICDSQRGLYKHEEIVMVVEKRLRHTPLGEVIADIRRSEEFKSKQIFVAGPGCAEEEDEMPEAACYHPGLIMWARMPKPLWDSEEECPRHSGPFVEQLGLVIVVWDAGEFCDKLAVDARGICRRRTVGDSRIETVGTVVGSYDTLQHAIQSIRLSPGIPADSRVVLVLQGVKAEIASRWRQRGGGAVEQGARLTMDDYADALVWMLLAEGIEYKETKDAAETGTYLRDVTRALAEVPFRDTATELSSAAKGKAIVNTGLGGNRDEALVFASSTQGLSQADKVATAWARQLEVVPGMSDTKALHIVNNHHGTLRSLLDVYQDPKYSEEEKMNWLADKMESVSGTRVSALRCL 499
            MADFCDLTEDLASPVKAHGQETVILKDDQDDEDNLLNDPFEAVGLPAPPIDVSTSSLTQTSDFIVRSCRMASREEEDERGERGNDKFQGGAEHTRGVSTSHERRILSTSLNGRSDEHISRVRKERRAAVKAEREAKQVEERIRKARAKLICDSQRGLYKHEEIVMVVEKRLRHTPLGEVIADIRRSEEFKSKQIFVAGPGCAEEEDEMPEAACYHPGLIMWARMPKPLWDSEEECPRHSGPFVEQLGLVIVVWDAGEFCDKLAVDARGICRRRTVGDSRIETVGTVVGSYDTLQHAIQSIRLSPGIPADSRVVLVLQGVKAEIASRWRQRGGGAVEQGARLTMDDYADALVWMLLAEGIEYKETKDAAETGTYLRDVTRALAEVPFRDTATELSSAAKGKAIVNTGLGGNRDEALVFASSTQGLSQADKVATAWARQLEVVPGMSDTKALHIVNNHHGTLRSLLDVYQDPKYSEEEKMNWLADKMESVSGTRVSALRCL
Sbjct:    1 MADFCDLTEDLASPVKAHGQETVILKDDQDDEDNLLNDPFEAVGLPAPPIDVSTSSLTQTSDFIVRSCRMASREEEDERGERGNDKFQGGAEHTRGVSTSHERRILSTSLNGRSDEHISRVRKERRAAVKAEREAKQVEERIRKARAKLICDSQRGLYKHEEIVMVVEKRLRHTPLGEVIADIRRSEEFKSKQIFVAGPGCAEEEDEMPEAACYHPGLIMWARMPKPLWDSEEECPRHSGPFVEQLGLVIVVWDAGEFCDKLAVDARGICRRRTVGDSRIETVGTVVGSYDTLQHAIQSIRLSPGIPADSRVVLVLQGVKAEIASRWRQRGGGAVEQGARLTMDDYADALVWMLLAEGIEYKETKDAAETGTYLRDVTRALAEVPFRDTATELSSAAKGKAIVNTGLGGNRDEALVFASSTQGLSQADKVATAWARQLEVVPGMSDTKALHIVNNHHGTLRSLLDVYQDPKYSEEEKMNWLADKMESVSGTRVSALRCL 499          
BLAST of EWM25147.1 vs. NCBI_GenBank
Match: gi|585106784|gb|EWM25146.1| (hypothetical protein Naga_100016g34 [Nannochloropsis gaditana])

HSP 1 Score: 1009.98 bits (2610), Expect = 0.000e+0
Identity = 492/492 (100.00%), Postives = 492/492 (100.00%), Query Frame = 0
Query:    1 MADFCDLTEDLASPVKAHGQETVILKDDQDDEDNLLNDPFEAVGLPAPPIDVSTSSLTQTSDFIVRSCRMASREEEDERGERGNDKFQGGAEHTRGVSTSHERRILSTSLNGRSDEHISRVRKERRAAVKAEREAKQVEERIRKARAKLICDSQRGLYKHEEIVMVVEKRLRHTPLGEVIADIRRSEEFKSKQIFVAGPGCAEEEDEMPEAACYHPGLIMWARMPKPLWDSEEECPRHSGPFVEQLGLVIVVWDAGEFCDKLAVDARGICRRRTVGDSRIETVGTVVGSYDTLQHAIQSIRLSPGIPADSRVVLVLQGVKAEIASRWRQRGGGAVEQGARLTMDDYADALVWMLLAEGIEYKETKDAAETGTYLRDVTRALAEVPFRDTATELSSAAKGKAIVNTGLGGNRDEALVFASSTQGLSQADKVATAWARQLEVVPGMSDTKALHIVNNHHGTLRSLLDVYQDPKYSEEEKMNWLADKMESVSGTR 492
            MADFCDLTEDLASPVKAHGQETVILKDDQDDEDNLLNDPFEAVGLPAPPIDVSTSSLTQTSDFIVRSCRMASREEEDERGERGNDKFQGGAEHTRGVSTSHERRILSTSLNGRSDEHISRVRKERRAAVKAEREAKQVEERIRKARAKLICDSQRGLYKHEEIVMVVEKRLRHTPLGEVIADIRRSEEFKSKQIFVAGPGCAEEEDEMPEAACYHPGLIMWARMPKPLWDSEEECPRHSGPFVEQLGLVIVVWDAGEFCDKLAVDARGICRRRTVGDSRIETVGTVVGSYDTLQHAIQSIRLSPGIPADSRVVLVLQGVKAEIASRWRQRGGGAVEQGARLTMDDYADALVWMLLAEGIEYKETKDAAETGTYLRDVTRALAEVPFRDTATELSSAAKGKAIVNTGLGGNRDEALVFASSTQGLSQADKVATAWARQLEVVPGMSDTKALHIVNNHHGTLRSLLDVYQDPKYSEEEKMNWLADKMESVSGTR
Sbjct:    1 MADFCDLTEDLASPVKAHGQETVILKDDQDDEDNLLNDPFEAVGLPAPPIDVSTSSLTQTSDFIVRSCRMASREEEDERGERGNDKFQGGAEHTRGVSTSHERRILSTSLNGRSDEHISRVRKERRAAVKAEREAKQVEERIRKARAKLICDSQRGLYKHEEIVMVVEKRLRHTPLGEVIADIRRSEEFKSKQIFVAGPGCAEEEDEMPEAACYHPGLIMWARMPKPLWDSEEECPRHSGPFVEQLGLVIVVWDAGEFCDKLAVDARGICRRRTVGDSRIETVGTVVGSYDTLQHAIQSIRLSPGIPADSRVVLVLQGVKAEIASRWRQRGGGAVEQGARLTMDDYADALVWMLLAEGIEYKETKDAAETGTYLRDVTRALAEVPFRDTATELSSAAKGKAIVNTGLGGNRDEALVFASSTQGLSQADKVATAWARQLEVVPGMSDTKALHIVNNHHGTLRSLLDVYQDPKYSEEEKMNWLADKMESVSGTR 492          
BLAST of EWM25147.1 vs. NCBI_GenBank
Match: gi|298705383|emb|CBJ28673.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.2041 bits (230), Expect = 2.088e-16
Identity = 103/374 (27.54%), Postives = 157/374 (41.98%), Query Frame = 0
Query:  135 AKQVEERIRKARAKLICDSQ-RGLYKHEEIVMVVEKRLRHTPLGEVIADIRRSEEFKSKQIFVAGPGCAEEEDEMPEAACYHPGLIMWARMPKPLWDSEEECPRHSGPFVEQLGLVIVVWDAGEFCDKLAVDARGICRRRTVGDSRIETVGTVVGSYDTLQHAIQSIRLSPGIPADSRVVLVLQGVKAEIASRWRQR-------GGGAVEQGARLTMDDYADALVWMLLAEGIEYKETKDAAETGTYLRDVTRALAEVPFRDTATELSSAAKGKAIVNTGLGGNRDEALVFASSTQGLSQADK-VATAWARQLEVVPGMSDTKALHIVNNHHGTLRSLLDVYQDPKYSEEEKMNWLADKMESVSGTRVSALRCL 499
            AKQ E+  + A+ K   D Q RG ++ EE+  V+E+    +      A    +E+   K+ F+  PG            C   G + W R  +   D        SGP V+ L +++VV       D+L     G       G      +   +G +      +  IR S      SR+VLVL+G KA I  RW          G G    G     D++ DA  W+L+ + +E + TK++ ETG YL D+T++L+ +P++D  TEL   A+ K                 A  ++   + +K +   W R LE V  +S  KA+ I   H+   R L+    DP   E ++   L  KM S S  R  A R  
Sbjct:  435 AKQREKAEKAAKTKR--DQQARGNFRDEEVACVMERHFFDS-ARNARARAGAAEQQGHKEKFMVAPG-----------DCGAAGAVWWTR--RAHLDGGAAV---SGPGVQTLDILVVVVPPETLLDRLGRPGAGGRGPGDGGGGGGSDLFRGLGQF------VDGIRSS--AAGFSRLVLVLEGAKAAIDKRWAASAHSSSSSGNGKGPAGRCARDDEFEDAQCWLLIHKEVETRLTKNSEETGQYLWDLTKSLSSMPYKDDVTELHCVARSK---------------TEARGSERFPEKEKELMDTWVRMLEQVQHVSGNKAVEIA-AHYPLPRDLVAALSDPSVPEGDRAGLLQRKMGSSSEQRKCARRVF 765          
The following BLAST results are available for this feature:
BLAST of EWM25147.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106785|gb|EWM25147.1|0.000e+0100.00hypothetical protein Naga_100016g34 [Nannochlorops... [more]
gi|585106784|gb|EWM25146.1|0.000e+0100.00hypothetical protein Naga_100016g34 [Nannochlorops... [more]
gi|298705383|emb|CBJ28673.1|2.088e-1627.54conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5573rna5573Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications