|
|
Properties
| Property Name | Value |
|---|
| Product | capping protein (actin filament) muscle z- alpha 2 |
| Orig transcript id | gnl|cribi|Naga_100016g39.2946.mrna |
| Orig protein id | gnl|cribi|Naga_100016g39.2946 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:308312..309553 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5569 ID=rna5569|Name=rna5569|organism=Nannochloropsis gaditana|type=mRNA|length=1479bp
ATGCCAATTTGGACGTGGATGCGTCTTTCTACAACCTGTGGCGTGGTTGT
AAGCGTTCTAAGCCTCGGTATTGACCGCAAAAGTATCTTCTGTCAAGGCT
CACGAGGCTTATCGTCCCGTGGAAAGTCTGCATTTGCTTTCACCCCCCCA
ACAGCGTGGAGGCCGTCAAATTTAGCTTCGATATCTAGAAACATAAATAA
AAGGTGGTGGAAGTGCTTGAAGTTGCCCAAATCCATCCAAATGCAGCTGC
CATCAGAGTTTGGGTCCTCGAGTTCTGGTCCCGCTACTTTTGGCGGCACT
GTCTCGCAAAAGCTTGATCTCGAATTAGAGGAGATTAAGCGCTATTCTCG
TCATCTTATTCTGTCCCAGGTAGGAATGGAAGGTCAACGGACGTTAAAGG
CCAGTTCTGTATTTTGCGTGGGCGCGGGCGGCTTAGGCTCTCCACTCCTG
CTGTACCTTGCCGCCGCAGGAGTGGGCCGTCTGGGCATCGTTGACGACGA
CACTGTAGAACTTTCAAATCTGCAGCGGCAAGTCATACACGGACAGGGCA
CTCTGGGGGAAGCTAAGGTGCGCTCCGCGGAGCGCCGAATCAAGGATGTA
AATCCCCACGTGCTGGTGGACGTGTACGAAGAGAAAATGACGGCGGAGAA
CACGCTTCGAATCCTGGCGCCCTATGACGTAGTGGTCGATGGGACGGACA
ATTTTCCGACAAGGTACTTGATCAATGATGCTTGTGTCATTCTCGGAAAG
CCACTCGTGTACGGGGCGATTCTTCGCTTCGAAGGCCAAGCCTCTGTCTT
CAACTACCGGGGGGGCCCGACCTATCGCGACCTTCTGCCCGAACCCCCCG
CTCCAGGGGACGTGCCTTCCTGCGCAGAGGGAGGGGTGCTGGGTGTGCTG
CCGGGTGTGATTGGTTGCATTCAAGCCACGGAAACGCTAAAGCTCCTAAC
GGGCATAGGGAAGCCTTTGTCAGGACGCATACTCATATACAATGCTCTGG
ACATGACCTTTCGCGAATGCGGCCTTCAACGGGATCCGAGTGCCCCTAAA
ATAACTTCTCTTATCGATTACGACTGCTTCTGTGGCGACCAAAAAGGGAA
CAAGCAGTCAGAGAAGGAAAACGCTTCAATGGCAGAAGCAACGGGAAATA
GTGCCTTCCAGCGTATCTCAGTCAAAGAGGCTCGGCGCAGGTTGGAGGAG
GATGGATGGGCGCCCTTCGTGCTTGATGTCCGATTGCCTCAAGAGGCGGA
GATCTCAAAGCTTCCTTTTAGTGATTTGCTATGTCCACACCGGGAGGTGG
AGAAAGTAGCGGCGCAGCTCCCACGGGAGCAAGACATTCTGGTGTACTGC
AAAGTCGGTGGTCGCTCGGCTCAAGCGTGCGAGAAGCTGGCGGCGCTTGG
ATTCACAAATCTTGTCAATTTGGATGGAGGGGTTATTGCATGGGCTAAGG
AGATAGATGCTCGCTTGCCAACATACTGA back to topprotein sequence of rna5569 >rna5569-protein ID=rna5569-protein|Name=rna5569|organism=Nannochloropsis gaditana|type=polypeptide|length=262bp
MSYSTPPLNVEGRHDAMEEEPSSQYADHRQHIAEQMLLSSPPGQFGHVLT
DLRKLLPASVLTESFVQEVTKVYNARRGIGLGKVEEMRNLTEGQERLNMK
RQELERALAGHVTESYASDSATTTMCSVKGSTLHVIIYSERVNLANFWSA
SWLSEWSIDDDKLSGSIQVRAHYFEDGNVQLHVNKSYPVLSVSLRSDTAI
IVECIKLAEETLSKNIEATCQELSTEGLHSLRRKLPVSKVKMNWSDAAAQ
NISKVLHNNTEH back to topmRNA from alignment at CM002466.1:308312..309553- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5569 ID=rna5569|Name=rna5569|organism=Nannochloropsis gaditana|type=mRNA|length=1242bp|location=Sequence derived from alignment at CM002466.1:308312..309553- (Nannochloropsis gaditana)
ATGTCCTATTCGACCCCTCCACTGAACGTAGAAGGCAGGCATGACGCCAT
GGAGGAAGAGCCCTCTTCTCAGTACGCAGACCACAGGCAGCACATAGCCG
AGCAAATGCTGCTGTCCAGCCCTCCAGGTCAATTTGGACATGTACTCACT
GGTAAGTTTATTCGATGCGAGCCATATACTTAAAGCGTACAGAAAGGTAA
CTGATGTTAACACTCGCCCTAACCCCACTCCAGACCTTCGCAAACTTTTG
CCAGCAAGTGTCTTGACCGAAAGCTTCGTTCAAGAGGTGACCAAGGTGTA
CAATGCCCGGCGAGGGATAGGGCTGGGCAAGGTTGAGGAAATGGTAAGTC
TCCCATACAAAGGATGGCGGATATTGGGAGCAAGCTTTTATCCGGGTGCT
TCACTTCTATCACGCTTGGCAAATGCCAGTTCAGCGCTCCGTGCGAAAAG
TTGAACGGCCGACATACGATTTTTTCCGCACAATTCCACAGAGAAACCTG
ACAGAGGGTCAAGAGCGACTAAACATGAAGCGCCAGGAACTAGAGAGGGC
GCTGGCTGGCCACGTCACGGAGAGCTACGCCTCAGACTCGGTGAGCAAGA
AACAGAAGCCTCGCACCTGTGCTCGGTATTTTTTTTTAATTCACACAAAT
ATCTAACCACAGGCGACAACCACTATGTGCTCGGTAAAAGGTTCCACCTT
GCACGTGATTATCTACAGCGAGCGCGTCAACTTGGCCAACTTTTGGTCGG
CCTCCTGGCTCTCAGAGTGGAGCATCGATGACGATAAGCTCTCCGGATCG
ATTCAGGTTCGTGGTCATGACCTCTTTTGCTGTACAGCTTGCACAACGCA
CACTCATTGCCAAACTAATCAGGTTCGGGCACATTATTTCGAGGACGGAA
ACGTGCAGTTACATGTAAACAAATCTTATCCGGTTTTGAGTGTGTCCCTA
AGAAGCGACACTGCCATTATAGTTGAATGCATAAAGCTGGCCGAGGAGAC
ATTAAGTGTGAGTTTATTACGACAAGACTTGTTTACTTTTCTTTAATTTC
TTCATAAAACGATGGTCTCAATTTTCCCGCCATGGCCCACAGAAGAATAT
TGAGGCCACCTGTCAAGAGCTCAGCACTGAAGGCCTTCATTCCCTCAGAC
GCAAGCTGCCTGTGAGTAAAGTCAAGATGAACTGGTCAGATGCGGCTGCT
CAAAACATAAGCAAAGTACTTCATAATAATACGGAACATTGA back to topCoding sequence (CDS) from alignment at CM002466.1:308312..309553- >rna5569 ID=rna5569|Name=rna5569|organism=Nannochloropsis gaditana|type=CDS|length=4734bp|location=Sequence derived from alignment at CM002466.1:308312..309553- (Nannochloropsis gaditana)
AAGAATATTGAGGCCACCTGTCAAGAGCTCAGCACTGAAGGCCTTCATTC
CCTCAGACGCAAGCTGCCTGTGAGTAAAGTCAAGATGAACTGGTCAGATG
CGGCTGCTCAAAACATAAGCAAAGTACTTCATAATAATACGGAACATTGA
GTTCGGGCACATTATTTCGAGGACGGAAACGTGCAGTTACATGTAAACAA
ATCTTATCCGGTTTTGAGTGTGTCCCTAAGAAGCGACACTGCCATTATAG
TTGAATGCATAAAGCTGGCCGAGGAGACATTAAGTGCGACAACCACTATG
TGCTCGGTAAAAGGTTCCACCTTGCACGTGATTATCTACAGCGAGCGCGT
CAACTTGGCCAACTTTTGGTCGGCCTCCTGGCTCTCAGAGTGGAGCATCG
ATGACGATAAGCTCTCCGGATCGATTCAGAGAAACCTGACAGAGGGTCAA
GAGCGACTAAACATGAAGCGCCAGGAACTAGAGAGGGCGCTGGCTGGCCA
CGTCACGGAGAGCTACGCCTCAGACTCGACCTTCGCAAACTTTTGCCAGC
AAGTGTCTTGACCGAAAGCTTCGTTCAAGAGGTGACCAAGGTGTACAATG
CCCGGCGAGGGATAGGGCTGGGCAAGGTTGAGGAAATGATGTCCTATTCG
ACCCCTCCACTGAACGTAGAAGGCAGGCATGACGCCATGGAGGAAGAGCC
CTCTTCTCAGTACGCAGACCACAGGCAGCACATAGCCGAGCAAATGCTGC
TGTCCAGCCCTCCAGGTCAATTTGGACATGTACTCACTGAAGAATATTGA
GGCCACCTGTCAAGAGCTCAGCACTGAAGGCCTTCATTCCCTCAGACGCA
AGCTGCCTGTGAGTAAAGTCAAGATGAACTGGTCAGATGCGGCTGCTCAA
AACATAAGCAAAGTACTTCATAATAATACGGAACATTGAGTTCGGGCACA
TTATTTCGAGGACGGAAACGTGCAGTTACATGTAAACAAATCTTATCCGG
TTTTGAGTGTGTCCCTAAGAAGCGACACTGCCATTATAGTTGAATGCATA
AAGCTGGCCGAGGAGACATTAAGTGCGACAACCACTATGTGCTCGGTAAA
AGGTTCCACCTTGCACGTGATTATCTACAGCGAGCGCGTCAACTTGGCCA
ACTTTTGGTCGGCCTCCTGGCTCTCAGAGTGGAGCATCGATGACGATAAG
CTCTCCGGATCGATTCAGAGAAACCTGACAGAGGGTCAAGAGCGACTAAA
CATGAAGCGCCAGGAACTAGAGAGGGCGCTGGCTGGCCACGTCACGGAGA
GCTACGCCTCAGACTCGACCTTCGCAAACTTTTGCCAGCAAGTGTCTTGA
CCGAAAGCTTCGTTCAAGAGGTGACCAAGGTGTACAATGCCCGGCGAGGG
ATAGGGCTGGGCAAGGTTGAGGAAATGATGTCCTATTCGACCCCTCCACT
GAACGTAGAAGGCAGGCATGACGCCATGGAGGAAGAGCCCTCTTCTCAGT
ACGCAGACCACAGGCAGCACATAGCCGAGCAAATGCTGCTGTCCAGCCCT
CCAGGTCAATTTGGACATGTACTCACTGAAGAATATTGAGGCCACCTGTC
AAGAGCTCAGCACTGAAGGCCTTCATTCCCTCAGACGCAAGCTGCCTGTG
AGTAAAGTCAAGATGAACTGGTCAGATGCGGCTGCTCAAAACATAAGCAA
AGTACTTCATAATAATACGGAACATTGAGTTCGGGCACATTATTTCGAGG
ACGGAAACGTGCAGTTACATGTAAACAAATCTTATCCGGTTTTGAGTGTG
TCCCTAAGAAGCGACACTGCCATTATAGTTGAATGCATAAAGCTGGCCGA
GGAGACATTAAGTGCGACAACCACTATGTGCTCGGTAAAAGGTTCCACCT
TGCACGTGATTATCTACAGCGAGCGCGTCAACTTGGCCAACTTTTGGTCG
GCCTCCTGGCTCTCAGAGTGGAGCATCGATGACGATAAGCTCTCCGGATC
GATTCAGAGAAACCTGACAGAGGGTCAAGAGCGACTAAACATGAAGCGCC
AGGAACTAGAGAGGGCGCTGGCTGGCCACGTCACGGAGAGCTACGCCTCA
GACTCGACCTTCGCAAACTTTTGCCAGCAAGTGTCTTGACCGAAAGCTTC
GTTCAAGAGGTGACCAAGGTGTACAATGCCCGGCGAGGGATAGGGCTGGG
CAAGGTTGAGGAAATGATGTCCTATTCGACCCCTCCACTGAACGTAGAAG
GCAGGCATGACGCCATGGAGGAAGAGCCCTCTTCTCAGTACGCAGACCAC
AGGCAGCACATAGCCGAGCAAATGCTGCTGTCCAGCCCTCCAGGTCAATT
TGGACATGTACTCACTGAAGAATATTGAGGCCACCTGTCAAGAGCTCAGC
ACTGAAGGCCTTCATTCCCTCAGACGCAAGCTGCCTGTGAGTAAAGTCAA
GATGAACTGGTCAGATGCGGCTGCTCAAAACATAAGCAAAGTACTTCATA
ATAATACGGAACATTGAGTTCGGGCACATTATTTCGAGGACGGAAACGTG
CAGTTACATGTAAACAAATCTTATCCGGTTTTGAGTGTGTCCCTAAGAAG
CGACACTGCCATTATAGTTGAATGCATAAAGCTGGCCGAGGAGACATTAA
GTGCGACAACCACTATGTGCTCGGTAAAAGGTTCCACCTTGCACGTGATT
ATCTACAGCGAGCGCGTCAACTTGGCCAACTTTTGGTCGGCCTCCTGGCT
CTCAGAGTGGAGCATCGATGACGATAAGCTCTCCGGATCGATTCAGAGAA
ACCTGACAGAGGGTCAAGAGCGACTAAACATGAAGCGCCAGGAACTAGAG
AGGGCGCTGGCTGGCCACGTCACGGAGAGCTACGCCTCAGACTCGACCTT
CGCAAACTTTTGCCAGCAAGTGTCTTGACCGAAAGCTTCGTTCAAGAGGT
GACCAAGGTGTACAATGCCCGGCGAGGGATAGGGCTGGGCAAGGTTGAGG
AAATGATGTCCTATTCGACCCCTCCACTGAACGTAGAAGGCAGGCATGAC
GCCATGGAGGAAGAGCCCTCTTCTCAGTACGCAGACCACAGGCAGCACAT
AGCCGAGCAAATGCTGCTGTCCAGCCCTCCAGGTCAATTTGGACATGTAC
TCACTGAAGAATATTGAGGCCACCTGTCAAGAGCTCAGCACTGAAGGCCT
TCATTCCCTCAGACGCAAGCTGCCTGTGAGTAAAGTCAAGATGAACTGGT
CAGATGCGGCTGCTCAAAACATAAGCAAAGTACTTCATAATAATACGGAA
CATTGAGTTCGGGCACATTATTTCGAGGACGGAAACGTGCAGTTACATGT
AAACAAATCTTATCCGGTTTTGAGTGTGTCCCTAAGAAGCGACACTGCCA
TTATAGTTGAATGCATAAAGCTGGCCGAGGAGACATTAAGTGCGACAACC
ACTATGTGCTCGGTAAAAGGTTCCACCTTGCACGTGATTATCTACAGCGA
GCGCGTCAACTTGGCCAACTTTTGGTCGGCCTCCTGGCTCTCAGAGTGGA
GCATCGATGACGATAAGCTCTCCGGATCGATTCAGAGAAACCTGACAGAG
GGTCAAGAGCGACTAAACATGAAGCGCCAGGAACTAGAGAGGGCGCTGGC
TGGCCACGTCACGGAGAGCTACGCCTCAGACTCGACCTTCGCAAACTTTT
GCCAGCAAGTGTCTTGACCGAAAGCTTCGTTCAAGAGGTGACCAAGGTGT
ACAATGCCCGGCGAGGGATAGGGCTGGGCAAGGTTGAGGAAATGATGTCC
TATTCGACCCCTCCACTGAACGTAGAAGGCAGGCATGACGCCATGGAGGA
AGAGCCCTCTTCTCAGTACGCAGACCACAGGCAGCACATAGCCGAGCAAA
TGCTGCTGTCCAGCCCTCCAGGTCAATTTGGACATGTACTCACTGAAGAA
TATTGAGGCCACCTGTCAAGAGCTCAGCACTGAAGGCCTTCATTCCCTCA
GACGCAAGCTGCCTGTGAGTAAAGTCAAGATGAACTGGTCAGATGCGGCT
GCTCAAAACATAAGCAAAGTACTTCATAATAATACGGAACATTGAGTTCG
GGCACATTATTTCGAGGACGGAAACGTGCAGTTACATGTAAACAAATCTT
ATCCGGTTTTGAGTGTGTCCCTAAGAAGCGACACTGCCATTATAGTTGAA
TGCATAAAGCTGGCCGAGGAGACATTAAGTGCGACAACCACTATGTGCTC
GGTAAAAGGTTCCACCTTGCACGTGATTATCTACAGCGAGCGCGTCAACT
TGGCCAACTTTTGGTCGGCCTCCTGGCTCTCAGAGTGGAGCATCGATGAC
GATAAGCTCTCCGGATCGATTCAGAGAAACCTGACAGAGGGTCAAGAGCG
ACTAAACATGAAGCGCCAGGAACTAGAGAGGGCGCTGGCTGGCCACGTCA
CGGAGAGCTACGCCTCAGACTCGACCTTCGCAAACTTTTGCCAGCAAGTG
TCTTGACCGAAAGCTTCGTTCAAGAGGTGACCAAGGTGTACAATGCCCGG
CGAGGGATAGGGCTGGGCAAGGTTGAGGAAATGATGTCCTATTCGACCCC
TCCACTGAACGTAGAAGGCAGGCATGACGCCATGGAGGAAGAGCCCTCTT
CTCAGTACGCAGACCACAGGCAGCACATAGCCGAGCAAATGCTGCTGTCC
AGCCCTCCAGGTCAATTTGGACATGTACTCACTG back to top
|