EWM25137.1, cds5555 (CDS) Nannochloropsis gaditana

Overview
NameEWM25137.1
Unique Namecds5555
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:309403..309553 -
Alignment locationCM002466.1:309211..309320 -
Alignment locationCM002466.1:308964..309062 -
Alignment locationCM002466.1:308748..308891 -
Alignment locationCM002466.1:308547..308681 -
Alignment locationCM002466.1:308312..308461 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25137.1
Productcapping protein (actin filament) muscle z- alpha 2
Orig transcript idgnl|cribi|Naga_100016g39.2946.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:309403..309553 -
CM002466.1supercontigCM002466.1:309211..309320 -
CM002466.1supercontigCM002466.1:308964..309062 -
CM002466.1supercontigCM002466.1:308748..308891 -
CM002466.1supercontigCM002466.1:308547..308681 -
CM002466.1supercontigCM002466.1:308312..308461 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0051016barbed-end actin filament capping
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO:0008290F-actin capping protein complex
Vocabulary: INTERPRO
TermDefinition
IPR017865F-actin_cap_asu_CS
IPR002189CapZ_alpha
Homology
BLAST of EWM25137.1 vs. NCBI_GenBank
Match: gi|585106775|gb|EWM25137.1| (capping protein (actin filament) muscle z- alpha 2 [Nannochloropsis gaditana])

HSP 1 Score: 544.273 bits (1401), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
Query:    1 MSYSTPPLNVEGRHDAMEEEPSSQYADHRQHIAEQMLLSSPPGQFGHVLTDLRKLLPASVLTESFVQEVTKVYNARRGIGLGKVEEMRNLTEGQERLNMKRQELERALAGHVTESYASDSATTTMCSVKGSTLHVIIYSERVNLANFWSASWLSEWSIDDDKLSGSIQVRAHYFEDGNVQLHVNKSYPVLSVSLRSDTAIIVECIKLAEETLSKNIEATCQELSTEGLHSLRRKLPVSKVKMNWSDAAAQNISKVLHNNTEH 262
            MSYSTPPLNVEGRHDAMEEEPSSQYADHRQHIAEQMLLSSPPGQFGHVLTDLRKLLPASVLTESFVQEVTKVYNARRGIGLGKVEEMRNLTEGQERLNMKRQELERALAGHVTESYASDSATTTMCSVKGSTLHVIIYSERVNLANFWSASWLSEWSIDDDKLSGSIQVRAHYFEDGNVQLHVNKSYPVLSVSLRSDTAIIVECIKLAEETLSKNIEATCQELSTEGLHSLRRKLPVSKVKMNWSDAAAQNISKVLHNNTEH
Sbjct:    1 MSYSTPPLNVEGRHDAMEEEPSSQYADHRQHIAEQMLLSSPPGQFGHVLTDLRKLLPASVLTESFVQEVTKVYNARRGIGLGKVEEMRNLTEGQERLNMKRQELERALAGHVTESYASDSATTTMCSVKGSTLHVIIYSERVNLANFWSASWLSEWSIDDDKLSGSIQVRAHYFEDGNVQLHVNKSYPVLSVSLRSDTAIIVECIKLAEETLSKNIEATCQELSTEGLHSLRRKLPVSKVKMNWSDAAAQNISKVLHNNTEH 262          
BLAST of EWM25137.1 vs. NCBI_GenBank
Match: gi|1173948999|gb|OQR97077.1| (F-actin-capping protein subunit alpha [Achlya hypogyna])

HSP 1 Score: 111.309 bits (277), Expect = 1.771e-25
Identity = 78/287 (27.18%), Postives = 133/287 (46.34%), Query Frame = 0
Query:   17 MEEEPSSQYADHRQHIAEQMLLSSPPGQFGHVLTDLRKLLPASVLTESFVQEVTKVYNARRGIGL--------------GKVEEMR----------------------NLTEGQERLNMK----RQELERALAGHVTESYASDSATTTMCSVKGSTLHVIIYSERVNLANFW--------------SASWLSEWSIDDDK--LSGSIQVRAHYFEDGNVQLHVNKSYPVLSVSLRSDT--AIIVECIKLAEETLSKNIEATCQELSTEGLHSLRRKLPVSKVKMNWS 245
            ME E +    D +  +A ++LLSSPPG+   V  D+ KLLPA +LT++ ++ V + YN +   G+              G+V+                         ++++  E+  M     R  +++AL G+V   +A+  A     S   + L +++ +ER+NL N+W              S  W S+W+++ D   L G+I +  HY+EDGN+QL   K+      S  +    A +V+ I+  E  +  N+E     +S E    +RR +PV++ KM WS
Sbjct:    1 MEGEYAHVSDDEKLAVATRLLLSSPPGEIRDVAKDVVKLLPAGLLTDAKLRGVLRAYNVKHCTGVMTPEGTHRVVICQAGEVDPTHYIDTKSKKVWGFDHLTQELLAHDVSDCPEKFTMPTEPFRLAVQQALDGYVFTQFANQGAAAVF-STGDNELTIVLSTERINLRNYWCDRDYATATKRVLTSGRWTSQWTLNLDSRVLKGAIDLHVHYYEDGNLQLQSRKAVETTLASTDASVVGAAVVQAIRDEEHVIHSNLEDMYINMSEETFKEMRRVMPVTQTKMEWS 286          
BLAST of EWM25137.1 vs. NCBI_GenBank
Match: gi|570313355|gb|ETO61303.1| (hypothetical protein, variant [Phytophthora parasitica P1976])

HSP 1 Score: 110.538 bits (275), Expect = 2.565e-25
Identity = 76/261 (29.12%), Postives = 121/261 (46.36%), Query Frame = 0
Query:   31 HIAEQMLLSSPPGQFGHVLTDLRKLLPASVLTESFVQEVTKVYNAR---------------------------------RGIGLGKV------EEMRNLTEGQ-ERLNMKRQELERALAGHVTESYASDSATTTMCSVKGSTLHVIIYSERVNLANFWSASWLSEWSID----DDKLSGSIQVRAHYFEDGNVQLHVNKSY-PVLSVSLRSDTA-IIVECIKLAEETLSKNIEATCQELSTEGLHSLRRKLPVSKVKMNWS 245
             IA++ LL+SPPGQ   VL D+ KL+PA VL ++ ++     YN +                                 R +G   +      E++  + E +      +RQE+++ L  ++   Y      T    + G+ L V + +ER+NL NFW   W S W +D      K+ G+IQ+  HYFE+GN+QL  +K     ++V    D    I+  +K AE+ L  N+E     +S E    +RR +PV++ KM WS
Sbjct:   17 QIAQRFLLASPPGQIHEVLRDVAKLVPAHVLPDAALRGALHAYNVKNCLPVDVPDADYKILICEEGEVDAAHYVDPIGNRVLGFDHIKQQIVAEDVAEIPEDRVTDFEKERQEVQKTLQSYLQFEYMH--GGTAGVYIVGTKLVVNLCTERINLRNFWGGRWNSRWEVDLTANPSKVKGTIQLHVHYFENGNLQLQNSKDIEEEITVQRPGDLGDAILRVMKEAEDDLQTNLEDMYINMSEETFKEMRRVMPVTQTKMEWS 275          
BLAST of EWM25137.1 vs. NCBI_GenBank
Match: gi|570967466|gb|ETP30585.1| (hypothetical protein F442_20430 [Phytophthora parasitica P10297])

HSP 1 Score: 109.383 bits (272), Expect = 6.910e-25
Identity = 76/261 (29.12%), Postives = 119/261 (45.59%), Query Frame = 0
Query:   31 HIAEQMLLSSPPGQFGHVLTDLRKLLPASVLTESFVQEVTKVYNAR---------------------------------RGIGLGKV------EEMRNLTEGQ-ERLNMKRQELERALAGHVTESYASDSATTTMCSVKGSTLHVIIYSERVNLANFWSASWLSEWSID----DDKLSGSIQVRAHYFEDGNVQLHVNKSYPVLSVSLRSDTA--IIVECIKLAEETLSKNIEATCQELSTEGLHSLRRKLPVSKVKMNWS 245
             IA++ LL+SPPGQ   VL D+ KL+PA VL ++ ++     YN +                                 R +G   +      E++  + E +      +RQE+++ L  ++   Y      T    + G+ L V + +ER+NL NFW   W S W +D      K+ G+IQ+  HYFE+GN+QL  +K         RS      I+  +K AE+ L  N+E     +S E    +RR +PV++ KM WS
Sbjct:   17 QIAQRFLLASPPGQIHEVLRDVAKLVPAHVLPDAALRGALHAYNVKNCLPVDVPDADYKILICEEGEVDAAHYVDPIGNRVLGFDHIKQQIVAEDVAEIPEDRVTDFEKERQEVQKTLQSYLQFEYMH--GGTAGVYIVGTKLVVNLCTERINLRNFWGGRWNSRWEVDLTANPSKVKGTIQLHVHYFENGNLQLQNSKDIEEEITVQRSGGLGDAILRVMKEAEDDLQTNLEDMYINMSEETFKEMRRVMPVTQTKMEWS 275          
BLAST of EWM25137.1 vs. NCBI_GenBank
Match: gi|570313354|gb|ETO61302.1| (hypothetical protein F444_20640 [Phytophthora parasitica P1976])

HSP 1 Score: 109.383 bits (272), Expect = 9.021e-25
Identity = 76/264 (28.79%), Postives = 121/264 (45.83%), Query Frame = 0
Query:   31 HIAEQMLLSSPPGQFGHVLTDLRKLLPASVLTESFVQEVTKVYNAR------------------------------------RGIGLGKV------EEMRNLTEGQ-ERLNMKRQELERALAGHVTESYASDSATTTMCSVKGSTLHVIIYSERVNLANFWSASWLSEWSID----DDKLSGSIQVRAHYFEDGNVQLHVNKSY-PVLSVSLRSDTA-IIVECIKLAEETLSKNIEATCQELSTEGLHSLRRKLPVSKVKMNWS 245
             IA++ LL+SPPGQ   VL D+ KL+PA VL ++ ++     YN +                                    R +G   +      E++  + E +      +RQE+++ L  ++   Y      T    + G+ L V + +ER+NL NFW   W S W +D      K+ G+IQ+  HYFE+GN+QL  +K     ++V    D    I+  +K AE+ L  N+E     +S E    +RR +PV++ KM WS
Sbjct:   17 QIAQRFLLASPPGQIHEVLRDVAKLVPAHVLPDAALRGALHAYNVKNCLPVDVPDADYKVCKILICEEGEVDAAHYVDPIGNRVLGFDHIKQQIVAEDVAEIPEDRVTDFEKERQEVQKTLQSYLQFEYMH--GGTAGVYIVGTKLVVNLCTERINLRNFWGGRWNSRWEVDLTANPSKVKGTIQLHVHYFENGNLQLQNSKDIEEEITVQRPGDLGDAILRVMKEAEDDLQTNLEDMYINMSEETFKEMRRVMPVTQTKMEWS 278          
BLAST of EWM25137.1 vs. NCBI_GenBank
Match: gi|813164828|ref|XP_012203474.1| (hypothetical protein SPRG_08855 [Saprolegnia parasitica CBS 223.65] >gi|641531860|gb|KDO25914.1| hypothetical protein SPRG_08855 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 108.997 bits (271), Expect = 1.307e-24
Identity = 72/263 (27.38%), Postives = 126/263 (47.91%), Query Frame = 0
Query:   27 DHRQHIAEQMLLSSPPGQFGHVLTDLRKLLPASVLTESFVQEVTKVYNARRGIGL--------------GKVEEMRNLTEGQER---LNMKRQELE-----------------------RALAGHVTESYASDSATTTMCSVKGSTLHVIIYSERVNLANFWSASWLSEWSIDDD--KLSGSIQVRAHYFEDGNVQLHVNKSYPVLSVSLRSDT--AIIVECIKLAEETLSKNIEATCQELSTEGLHSLRRKLPVSKVKMNWS 245
            D +  IA Q+LLS+PPG+   V  D+ KLLPA +L+++ ++     YN +  +G+              G+V+    L    ++    +   QEL+                       +AL  +    +A+  A     +   + L +++ +ERVNL N+WS  W S+W+++ +   L+G+I +  HY+EDGN+QL  +K+         + T  A +V+ I+  E  +  N+E     +S E    +RR +PV++ KM WS
Sbjct:   12 DEKLKIANQLLLSAPPGEIRDVAKDVTKLLPAGLLSDAKLRSAMHAYNTKNCVGVMAPEGTHRVIICKEGEVDPTHYLDTKTKKVWGFDHVTQELQAHDARDAADMFVLPAEPFRLAVHQALDDYAFTQFANQGAVAVYAT-SPNELAIVLSTERVNLRNYWSGRWKSQWTLNLETRALTGTIDLHVHYYEDGNLQLQSHKTTEKTLTFHDASTVGAAVVQVIRDEEHVIHSNLEDMYINMSEETFKEMRRVMPVTQTKMEWS 273          
BLAST of EWM25137.1 vs. NCBI_GenBank
Match: gi|568035212|gb|ETM32864.1| (hypothetical protein L914_19811 [Phytophthora parasitica])

HSP 1 Score: 108.612 bits (270), Expect = 1.494e-24
Identity = 74/262 (28.24%), Postives = 122/262 (46.56%), Query Frame = 0
Query:   31 HIAEQMLLSSPPGQFGHVLTDLRKLLPASVLTESFVQEVTKVYNAR---------------------------------RGIGLGKV------EEMRNLTEGQ-ERLNMKRQELERALAGHVTESYASDSATTTMCSVKGSTLHVIIYSERVNLANFWSASWLSEWSID----DDKLSGSIQVRAHYFEDGNVQLHVNKSYPVLSVSLRSDTAI---IVECIKLAEETLSKNIEATCQELSTEGLHSLRRKLPVSKVKMNWS 245
             IA++ LL+SPPGQ   VL D+ KL+PA VL ++ ++     YN +                                 R +G   +      E++  + E +      +RQE+++ L  ++   Y      T    + G+ L V + +ER+NL NFW   W S W +D      K+ G+IQ+  HYFE+GN+QL  +K      ++++    +   I+  +K AE+ L  N+E     +S E    +RR +PV++ KM WS
Sbjct:   17 QIAQRFLLASPPGQIHEVLRDVAKLVPAHVLPDAALRGALHAYNVKNCLPVDVPDADYKILICEEGEVDAAHYVDPIGNRVLGFDHIKQQIVAEDVAEIPEDRVTDFEKERQEVQKTLQSYLQFEYMH--GGTAGVYIVGTKLVVNLCTERINLRNFWGGRWNSRWEVDLTANPSKVKGTIQLHVHYFENGNLQLQNSKDIEE-EITVQRPGGLGDAILRVMKEAEDDLQTNLEDMYINMSEETFKEMRRVMPVTQTKMEWS 275          
BLAST of EWM25137.1 vs. NCBI_GenBank
Match: gi|675178037|ref|XP_008897903.1| (hypothetical protein PPTG_05916 [Phytophthora parasitica INRA-310] >gi|566009675|gb|ETI32586.1| hypothetical protein F443_20623 [Phytophthora parasitica P1569] >gi|568005319|gb|ETL79620.1| hypothetical protein L917_19776 [Phytophthora parasitica] >gi|568102121|gb|ETN16803.1| hypothetical protein PPTG_05916 [Phytophthora parasitica INRA-310])

HSP 1 Score: 108.227 bits (269), Expect = 2.129e-24
Identity = 74/262 (28.24%), Postives = 122/262 (46.56%), Query Frame = 0
Query:   31 HIAEQMLLSSPPGQFGHVLTDLRKLLPASVLTESFVQEVTKVYNAR---------------------------------RGIGLGKV------EEMRNLTEGQ-ERLNMKRQELERALAGHVTESYASDSATTTMCSVKGSTLHVIIYSERVNLANFWSASWLSEWSID----DDKLSGSIQVRAHYFEDGNVQLHVNKSYPVLSVSLRSDTAI---IVECIKLAEETLSKNIEATCQELSTEGLHSLRRKLPVSKVKMNWS 245
             IA++ LL+SPPGQ   VL D+ KL+PA VL ++ ++     YN +                                 R +G   +      E++  + E +      +RQE+++ L  ++   Y      T    + G+ L V + +ER+NL NFW   W S W +D      K+ G+IQ+  HYFE+GN+QL  +K      ++++    +   I+  +K AE+ L  N+E     +S E    +RR +PV++ KM WS
Sbjct:   17 QIAQRFLLASPPGQIHEVLRDVAKLVPAHVLPDAALRGALHAYNVKNCLPVDVPDADYKILICEEGEVDAAHYVDPIGNRVLGFDHIKQQIVAEDVAEIPEDRVTDFEKERQEVQKTLQSYLQFEYMH--GGTAGVYIVGTKLVVNLCTERINLRNFWGGRWNSRWEVDLTANPAKVKGTIQLHVHYFENGNLQLQNSKDIEE-EITVQRPGGLGDAILRVMKEAEDDLQTNLEDMYINMSEETFKEMRRVMPVTQTKMEWS 275          
BLAST of EWM25137.1 vs. NCBI_GenBank
Match: gi|567947162|gb|ETK72954.1| (hypothetical protein L915_20037 [Phytophthora parasitica] >gi|567975859|gb|ETL26394.1| hypothetical protein L916_19914 [Phytophthora parasitica] >gi|570937167|gb|ETP02424.1| hypothetical protein F441_20493 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 108.227 bits (269), Expect = 2.314e-24
Identity = 74/262 (28.24%), Postives = 122/262 (46.56%), Query Frame = 0
Query:   31 HIAEQMLLSSPPGQFGHVLTDLRKLLPASVLTESFVQEVTKVYNAR---------------------------------RGIGLGKV------EEMRNLTEGQ-ERLNMKRQELERALAGHVTESYASDSATTTMCSVKGSTLHVIIYSERVNLANFWSASWLSEWSID----DDKLSGSIQVRAHYFEDGNVQLHVNKSYPVLSVSLRSDTAI---IVECIKLAEETLSKNIEATCQELSTEGLHSLRRKLPVSKVKMNWS 245
             IA++ LL+SPPGQ   VL D+ KL+PA VL ++ ++     YN +                                 R +G   +      E++  + E +      +RQE+++ L  ++   Y      T    + G+ L V + +ER+NL NFW   W S W +D      K+ G+IQ+  HYFE+GN+QL  +K      ++++    +   I+  +K AE+ L  N+E     +S E    +RR +PV++ KM WS
Sbjct:   17 QIAQRFLLASPPGQIHEVLRDVAKLVPAHVLPDAALRGALHAYNVKNCLPVDVPDADYKILICEEGEVDAAHYVDPISNRVLGFDHIKQQIVAEDVAEIPEDRVTDFEKERQEVQKTLQSYLQFEYMH--GGTAGVYIVGTKLVVNLCTERINLRNFWGGRWNSRWEVDLTANPAKVKGTIQLHVHYFENGNLQLQNSKDIEE-EITVQRPGGLGDAILRVMKEAEDDLQTNLEDMYINMSEETFKEMRRVMPVTQTKMEWS 275          
BLAST of EWM25137.1 vs. NCBI_GenBank
Match: gi|669164866|ref|XP_008617995.1| (hypothetical protein SDRG_13677 [Saprolegnia diclina VS20] >gi|530730356|gb|EQC28598.1| hypothetical protein SDRG_13677 [Saprolegnia diclina VS20])

HSP 1 Score: 107.457 bits (267), Expect = 3.941e-24
Identity = 72/263 (27.38%), Postives = 125/263 (47.53%), Query Frame = 0
Query:   27 DHRQHIAEQMLLSSPPGQFGHVLTDLRKLLPASVLTESFVQEVTKVYNARRGIGL--------------GKVEEMRNLTEGQER---LNMKRQELE-----------------------RALAGHVTESYASDSATTTMCSVKGSTLHVIIYSERVNLANFWSASWLSEWSIDDDK--LSGSIQVRAHYFEDGNVQLHVNKSYPVLSVSLRSDT--AIIVECIKLAEETLSKNIEATCQELSTEGLHSLRRKLPVSKVKMNWS 245
            D + +IA  +LLS+PPG+   V  D+ KLLPA +L+++ ++     YN +  +G+              G+V+    L    ++    +   QEL+                       +AL  +    +A+  A     +     L +++ +ERVNL N+WS  W S+W+++ +   L+G+I +  HY+EDGN+QL  +KS         + T  A +V+ I+  E  +  N+E     +S E    +RR +PV++ KM WS
Sbjct:   12 DEKLNIANHLLLSAPPGEIRDVAKDVTKLLPAGLLSDAKLRSAMHAYNTKNCVGVMAPEGTHRVIICKEGEVDPTHYLDTKTKKVWGFDHVTQELQAQDARDAADLFVLPAEPFRLAVHQALDDYAFTQFANQGAVAVYAT-SPQELAIVLSTERVNLRNYWSGRWKSQWTLNLETRVLTGAIDLHVHYYEDGNLQLQSHKSTEKTLTFHDASTVGAAVVQVIRDEEHVIHSNLEDMYINMSEETFKEMRRVMPVTQTKMEWS 273          
The following BLAST results are available for this feature:
BLAST of EWM25137.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106775|gb|EWM25137.1|0.000e+0100.00capping protein (actin filament) muscle z- alpha 2... [more]
gi|1173948999|gb|OQR97077.1|1.771e-2527.18F-actin-capping protein subunit alpha [Achlya hypo... [more]
gi|570313355|gb|ETO61303.1|2.565e-2529.12hypothetical protein, variant [Phytophthora parasi... [more]
gi|570967466|gb|ETP30585.1|6.910e-2529.12hypothetical protein F442_20430 [Phytophthora para... [more]
gi|570313354|gb|ETO61302.1|9.021e-2528.79hypothetical protein F444_20640 [Phytophthora para... [more]
gi|813164828|ref|XP_012203474.1|1.307e-2427.38hypothetical protein SPRG_08855 [Saprolegnia paras... [more]
gi|568035212|gb|ETM32864.1|1.494e-2428.24hypothetical protein L914_19811 [Phytophthora para... [more]
gi|675178037|ref|XP_008897903.1|2.129e-2428.24hypothetical protein PPTG_05916 [Phytophthora para... [more]
gi|567947162|gb|ETK72954.1|2.314e-2428.24hypothetical protein L915_20037 [Phytophthora para... [more]
gi|669164866|ref|XP_008617995.1|3.941e-2427.38hypothetical protein SDRG_13677 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5569rna5569Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications