rna5566, rna5566 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5566
Unique Name	rna5566
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3828
Alignment location	CM002466.1:301179..302657 -

Link to JBrowse

Properties


Property Name	Value
Product	gnat family
Orig transcript id	gnl\|cribi\|Naga_100016g42.2910.mrna
Orig protein id	gnl\|cribi\|Naga_100016g42.2910
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:301179..302657 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g42	gene5379	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25101.1	cds5552	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5566	rna5566-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:301179..302657-
coding sequence from alignment at CM002466.1:301179..302657-

mRNA sequence

>rna5566 ID=rna5566|Name=rna5566|organism=Nannochloropsis gaditana|type=mRNA|length=3828bp
TGTCACGTACTAGCCATCTCATCCAACTTTCCCTTTATTTGCACCCACAA
AGCGCGAAGAATCACCCTGGGTATGGACGTCGAAGAGTGGCTTTGTACGG
AATTGCATGATGTGGTGGGTTACAGCGACAAAACGCTCAGCCAATTTATT
CTCTCCCTGGCTAAGCGGGCCCCTTCTGCGGCTGCTCTACACGTCCAGCT
GATAGGCAGCGGAATTGAGGAGGGTCCGAGGACCCGTCCTTTCGCCGAGG
CGCTTTTCCAACGTATGAGGTCTCAAGGTGGAAAGGTTGGCAAGGGGGTG
GCTCGAAATGCCGGGGGTGTGGGAGGTAGAGCTGCGGCATCTGTAGGAGA
GAGGCGGCTTACCAACGCCGAGCTCATCCGCCAGAGCCAGCGATACTCCC
TGGTTGAAAGTGACGACGAGGACTATAAGCGAGCGATCAGTGGCACTGGT
GATGGTAATGGGACTAACGGAGGGAAGCGAAGGAAGGAGGAGAAGAAGGA
GAAACGGGAAAAGAAGGAGAGGCAGGCGCGCAAGAAGACAGCTGAGATCG
AGGAAGACGAGGAGGAGGACATCTCACTGGTGCGAAAGCGCGTGCGCGAG
GTCACTTCTGGCGCGGTTATGGACGCAAAAGAAAAGGGCGAAGACGAAAG
AAAACAAGAAGAGTTGGATGAAGACATCCGGGAACGAGACGCGTTCGTCC
AGCGTATGCTCGAGAAAGAGGACATGAAGACGCAACAGAAAGCATCGGGG
GGAGGCCTGTCGGCAGAGCAGATCAAGGAACTTGCCACGACAGGAGCCGT
GTCAAAAGAGGGGGAGGAGTATCTGGACGAGGCGCGTAAAGTGTCGCGGC
GAGAGTACTTGAAGAAGCGGGAGGAGAAGGAGCTAGCGTTAATCGAGAAG
GAGCTTCGAGAAGAAGAGTTCCTCTTCGGGGATGTAGAGATCACGGCCGA
GGAAAAGCAACGCCGCGAAGTGAAGCGGAAGGTGTTGGAGATGGCCAAGG
AAAAAGACAGGTTCGAAAGGGAGCACCGGGGCTACCGCATGCCCGAAGCC
TACGAGACCGCCGACGGGAAGCTGGACACATCCAAGCGGGACGCAGCCTT
GACGGCCCGCTACCAGGAGGAGGAGCAGTACAAGACGGAGCAGGAGCTCT
GGGAGGAGCAGCAGGTGAGCGTGGCCTCCTTTCGGCCGGGCGCCAAGGAT
AAGGGCGCGGCCCAGAAGGATTTGACGGCGGAGGAAGCTGAATTGGAGGA
ATTTATGTTTGAAAATCAGATCGATTTTGTGTCGGATCAACTGTTGAACA
ACAAACTCGCGAAATCCAAGAAGCAGCGGACGAAGAAAAAGGAGAAGGGT
GGCGAGCAGGAGAGGTTGAGTAGCACTGAGGAGTCATCGGAGGACGAAGG
CCAAGACGAGGAGCAGTGGCTGGCGCAGGCGCGCGCCCCTATGACCGAAT
TTGAAAAGCTCCAGGCGGGAAGGAAGAGACTGCCGGTGTTTCGGTACCGG
GAAGAGATCCTGGCCGCCATCAAGGACCATCAAGTGCTGGTCTTGTCGGC
CGAGACAGGCTCGGGGAAGACGACGCAGATCCCGCAGTACTTGCACGAGG
TGGGCTACACCCAGGCGGGCATGATCGCATGCACTCAGCCTCGCCGCGTG
GCCGCCATGAGCGTGGCGGCCCGAGTTTCGCAGGAAATGGGGACCAAGAT
CGGCCAGGAGGTGGGTTACTCCATCCGCTTTGAGAACTGCACTTCGGAGA
AGACAGTGATCAAGTACATGACAGACGGCATGCTGCTTCGCGAGTTTTTG
ACGGAGCCGGACATGGCCTCGTACTCGGTGGTCATCATCGACGAGGCCCA
CGAGCGGACGCTCCACACCGACGTCCTCCTAGGCCTCTGCAAAGACATTG
CTCGCTTCCGAGAGGACCTGCGCCTGATCATCTCCTCGGCCACGCTCAAC
GCGGAGCGATTCTCGAACTATTTTGACGGGGCTGCCATCTTCACGGTCCC
AGGCCGCATCTTCAGCGTTGATGTGTACTACACCAAGGCGCCCGAGGCCG
ACTATCTGGATGCAGCTGTGGTTTCTGTACTGCACATCCACATCTCTCAG
CCCGTCCCTGGGGACATACTGGTTTTCCTGACAGGGCAGGAGGAGATCGA
GACGGCGGCAGAAGAACTCACCAAGCGCACTAAAGGTCTGGGCTCGCGCA
TCAAGGAGCTAATAATTTGTCCCATCTATGCGACGCTGCCTTCAGAGCAG
CAGGCAAAAATTTTCGAGAAGGCCCCTCCGAACGCCCGTAAGGTTGTCCT
GGCCACAAACATCGCCGAGACCTCTTTGACAATCGACGGAATCTGTTTCG
TGGTGGACACTGGTTTTTGCAAACAAAAATCTTACAACCCGCGGTCGGGG
ATGGAATCTCTCATCGTCACGCCCGTGTCAAGAGCGGCAGCCGAGCAACG
CAAGGGCAGGGCGGGCAGGACGCAGAACGGCAAGTGCTTCCGGCTTTTCA
CCATGTGGGCCTTCCAGAACGAGCTTGACGAGGACACGGTGCCAGAAATC
CAGCGCACCAATATGGGGAACGTGGTGCTTATGCTCATGTCGCTGGGCAT
CAACAACATTCTGCAGTTCGATTTCATGGACAAGCCCCCAACAGAAGCCA
TCATGCAGGCACTTCAGCAGCTTTACGCATTGGCTGCGATCAACGAGCGA
GGCGAGCTGACCAAGTTGGGACGTCGTATGGCCGAGTTCCCTCTGGAGCC
CATGCATTCAAAGGCCTTGCTGGCGAGTGAGAAATACAAATGCGTCGACG
ACGTGATCACGATCCTGGCGATGCTAACGGTGGGAAACTCAATCTTTTAC
CGACCAAAGGACCGTGCCGTTCACGCTGACAATGCTCGCTTCAACTTTGC
CCGCGGGGGAGGAGGGGATCATCTGGCCTTACTGCGGTGTTACCAGCAAT
GGGAAGAGAGCAACTTCTCCACGCAGTGGTGCTACGAGAATTTTGTCCAA
ATTCGCTCCATGAAGAAGGCGCGCGACATCCGAGAGCAGCTGACGGGCCT
GTGCGAGCGTGTCGAGATTGAATCGGTGTCCTCTGTAGATATCGACGATA
TACGGAAGGCCATCACGGCGGGTTTCTTCTTCAATTGCGCCTCGCTCACG
CGCTCTCAGGACTATCAAACCTTAAAGCACGCCCACACTGTGTACATCCA
CCCATCCTCAGTGCTGGCCAAGGACCAAAGAGAAGGCGTCCTACATTCTC
ATCTGGTCTATCACGAGCTGGCCTTCACGTCAAAAGAGTACATGCGCTCT
ATCACTCCGATTCAGCCTCAATGGCTCTTGGAAGTGGCGCAGCATTATTA
CGACGCCGCCTCAATTCAAGACCTCTCCCAGAAGAAGAAGGTGCCCAAGG
CGGTAGGGAAAGCTCCGGAGACCAACCGATAATCTACAGGTTCGAAAGTA
GGAAGAAGTCACACATGGGGGTGAAGGGAGCACATATTCTGTATAGATGC
ATTATGAGCTTTGTTTACCTTAGCAAAGAGCTTAGTTGATGGGCTTAAAA
CAAATGGCTTTTTAAGATGAATATATCGAAAGTACTTTTTTGACTTCAGG
TAAATACAAGACGGATTCTAATTGTCTGATGTTCCCCTTTTTCTAAATGT
ATACGCACTCCTTTTCCCTGCGACTTTGACACTGTCTGTTAAAGCAATGC
AAGCAAACTTGTTCGCAAGCCTGTGATCAATGTTAGTGGAAAACAACTGA
TTTCAAGCCTGCATAGAGTGACGTGACCGTGCCAGTATACACACAACAAG
AGGAGGCGAAAAAAGCCAACTGCCTGTG

protein sequence of rna5566

>rna5566-protein ID=rna5566-protein|Name=rna5566|organism=Nannochloropsis gaditana|type=polypeptide|length=332bp
MPRRPHRSAGQRLLSMTTLLLLNNALCPQICCEAFQPGHSAVVTQTSTTT
RGFGVATATFRVKVHAHHTNAAEASRFRDVKEQQIQRLRLRSPFLCVNIK
PASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILI
ATARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCV
RDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYH
EVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAELSRGIAEK
GPVHSWALSIPSLSALRRPHSHACQIGPPSSL

mRNA from alignment at CM002466.1:301179..302657-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5566 ID=rna5566|Name=rna5566|organism=Nannochloropsis gaditana|type=mRNA|length=1479bp|location=Sequence derived from alignment at CM002466.1:301179..302657- (Nannochloropsis gaditana)
TGCTCAACTCTAGCAGCCGGTGTTACATGCACATGGCCGGCGTCTTTCGC
ACCGTCTCTCATCTGCAGTCAATACAAATAGACAGTGTCATCGCATTTTT
TGATGCCTCCCGACCAGAGGATACTTTATGTCAAGGAAGGACCCTAAATT
TGCGAAAATTGGGGTCGGAAACAAACAAGTGAAACAGTAGCGAACTCATT
CAGGTGGTGGAAATGCCGCGACGACCACATCGCTCAGCGGGACAACGCTT
GCTGTCAATGACAACGCTCCTCCTCCTCAACAATGCTCTTTGTCCTCAAA
TATGCTGTGAAGCTTTTCAGCCAGGGCATTCAGCTGTAGTAACTCAGACT
TCGACAACGACCCGAGGTTTCGGTGTGGCAACAGCCACGTTCCGTGTCAA
GGTGCACGCGCATCATACAAATGCAGCAGAAGCAAGTCGGTTTCGTGATG
TGAAGGAGCAACAGATCCAGAGGCTTCGCTTACGCAGTCCTTTTCTGTGT
GTAAATATTAAGCCCGCATCCCGTCTGGAAGAGCTTCTCGCTGTAATTGA
ACTACGCGCCAAGGTTTTTGCCAATACCTTGGAGCCGCTCTCTGTAAAGT
CTAGGCTGCGACGCATTAAGCATATCCTGGATCGGCGAGCCAAAGGCAGC
TTAATCCTTATTGCTACGGCACGTGACCTCATGTCGCCATTTTCCGACGA
GGTAATCATAGGATCTATCGAGTGCTCAACTCATGAATTTGATAATGGCG
CTTCGCCTTTCCTGCGTGATTCTGCCGATGTCTGCAAATTATATGTCACG
GAACTATGTGTAAGGGATGCCTTCCGCGGAAAAGGCGTGGCCACAGCTCT
CCTCAAGGCTGTGGATGGTATTGCAGACAGTCTCGGTGCCGCTTACGTGT
GTCTCTTTTGTGAACGCCTCAACCTGGCGGCATCGCGCTTGTATATCTCT
TCAAACTATCATGAGGTCGGGCACAGTCCGTCGGTGAATAAGTTCGCTGG
GGCGCTCGGTCTGCCTACAGCTGCAAAAGCATACGGATTTTTCTACAAAC
AGATCTCGCACCCCACTACGGACCATGCTGAAGCAGAGCTTTCCCGCGGC
ATCGCTGAGAAAGGCCCTGTACATTCCTGGGCATTGTCGATCCCATCCTT
GAGTGCGCTGAGGCGACCACACAGTCACGCTTGTCAAATTGGGCCCCCCT
CAAGTTTGTAAAAATGGGAAATTTCGCACAGGCAGTTGGCTTTTTTCGCC
TCCTCTTGTTGTGTGTATACTGGCACGGTCACGTCACTCTATGCAGGCTT
GAAATCAGTTGTTTTCCACTAACATTGATCACAGGCTTGCGAACAAGTTT
GCTTGCATTGCTTTAACAGACAGTGTCAAAGTCGCAGGGAAAAGGAGTGC
GTATACATTTAGAAAAAGGGGAACATCAGACAATTAGAATCCGTCTTGTA
TTTACCTGAAGTCAAAAAAGTACTTTCGA

Coding sequence (CDS) from alignment at CM002466.1:301179..302657-

>rna5566 ID=rna5566|Name=rna5566|organism=Nannochloropsis gaditana|type=CDS|length=999bp|location=Sequence derived from alignment at CM002466.1:301179..302657- (Nannochloropsis gaditana)
ATGCCGCGACGACCACATCGCTCAGCGGGACAACGCTTGCTGTCAATGAC
AACGCTCCTCCTCCTCAACAATGCTCTTTGTCCTCAAATATGCTGTGAAG
CTTTTCAGCCAGGGCATTCAGCTGTAGTAACTCAGACTTCGACAACGACC
CGAGGTTTCGGTGTGGCAACAGCCACGTTCCGTGTCAAGGTGCACGCGCA
TCATACAAATGCAGCAGAAGCAAGTCGGTTTCGTGATGTGAAGGAGCAAC
AGATCCAGAGGCTTCGCTTACGCAGTCCTTTTCTGTGTGTAAATATTAAG
CCCGCATCCCGTCTGGAAGAGCTTCTCGCTGTAATTGAACTACGCGCCAA
GGTTTTTGCCAATACCTTGGAGCCGCTCTCTGTAAAGTCTAGGCTGCGAC
GCATTAAGCATATCCTGGATCGGCGAGCCAAAGGCAGCTTAATCCTTATT
GCTACGGCACGTGACCTCATGTCGCCATTTTCCGACGAGGTAATCATAGG
ATCTATCGAGTGCTCAACTCATGAATTTGATAATGGCGCTTCGCCTTTCC
TGCGTGATTCTGCCGATGTCTGCAAATTATATGTCACGGAACTATGTGTA
AGGGATGCCTTCCGCGGAAAAGGCGTGGCCACAGCTCTCCTCAAGGCTGT
GGATGGTATTGCAGACAGTCTCGGTGCCGCTTACGTGTGTCTCTTTTGTG
AACGCCTCAACCTGGCGGCATCGCGCTTGTATATCTCTTCAAACTATCAT
GAGGTCGGGCACAGTCCGTCGGTGAATAAGTTCGCTGGGGCGCTCGGTCT
GCCTACAGCTGCAAAAGCATACGGATTTTTCTACAAACAGATCTCGCACC
CCACTACGGACCATGCTGAAGCAGAGCTTTCCCGCGGCATCGCTGAGAAA
GGCCCTGTACATTCCTGGGCATTGTCGATCCCATCCTTGAGTGCGCTGAG
GCGACCACACAGTCACGCTTGTCAAATTGGGCCCCCCTCAAGTTTGTAA

Synonyms

Publications