EWM25101.1, cds5552 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25101.1 vs. NCBI_GenBank
Match: gi|585106739|gb|EWM25101.1| (gnat family [Nannochloropsis gaditana]) HSP 1 Score: 680.633 bits (1755), Expect = 0.000e+0 Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query: 1 MPRRPHRSAGQRLLSMTTLLLLNNALCPQICCEAFQPGHSAVVTQTSTTTRGFGVATATFRVKVHAHHTNAAEASRFRDVKEQQIQRLRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAELSRGIAEKGPVHSWALSIPSLSALRRPHSHACQIGPPSSL 332
MPRRPHRSAGQRLLSMTTLLLLNNALCPQICCEAFQPGHSAVVTQTSTTTRGFGVATATFRVKVHAHHTNAAEASRFRDVKEQQIQRLRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAELSRGIAEKGPVHSWALSIPSLSALRRPHSHACQIGPPSSL
Sbjct: 1 MPRRPHRSAGQRLLSMTTLLLLNNALCPQICCEAFQPGHSAVVTQTSTTTRGFGVATATFRVKVHAHHTNAAEASRFRDVKEQQIQRLRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAELSRGIAEKGPVHSWALSIPSLSALRRPHSHACQIGPPSSL 332
BLAST of EWM25101.1 vs. NCBI_GenBank
Match: gi|553196177|ref|XP_005856284.1| (gnat family, partial [Nannochloropsis gaditana CCMP526] >gi|422292762|gb|EKU20064.1| gnat family, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 514.227 bits (1323), Expect = 0.000e+0 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query: 81 KEQQIQRLRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAELSRGIAEKGPVHSWALSIPSLSALRRPHSHACQIGPPSSL 332
KEQQIQRLRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAELSRGIAEKGPVHSWALSIPSLSALRRPHSHACQIGPPSSL
Sbjct: 1 KEQQIQRLRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAELSRGIAEKGPVHSWALSIPSLSALRRPHSHACQIGPPSSL 252
BLAST of EWM25101.1 vs. NCBI_GenBank
Match: gi|298708235|emb|CBJ48298.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 75.8702 bits (185), Expect = 1.040e-11 Identity = 62/231 (26.84%), Postives = 95/231 (41.13%), Query Frame = 0
Query: 103 SRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIAT---------------------------------------ARDLMSPFSDEVIIGSIECSTHEFDNG--ASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAE 292
++L++ A+ ++R VF+ L + R R + +RR KG+ L+A A L + SD ++G++ECS HEFD A A + +LY+TE+ VR R GV LL+ VD +A +L + V L +N AA RLY Y E +S S F +LGL + P TD ++ +
Sbjct: 167 AKLDDYFAIADVRFDVFSPVHSTLKHRFRERSCLLMRERRRKGAFCLVAALDGPARVAAAAAAASDRAAASQREGGGVGLGEDPAASAAAAPLETAVSDGHVLGTLECSRHEFDGTPLAVEVEEQGAKIARLYLTEVAVRSDCRRMGVGRVLLELVDDVARALKTSEVFLHVNEINQAALRLYARCGYEEAPNSASNRAFTNSLGLSGGFIGQRHLLLHKTFPDTDGSDGD 397
BLAST of EWM25101.1 vs. NCBI_GenBank
Match: gi|585107802|gb|EWM25931.1| (gcn5-related n-acetyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 75.0998 bits (183), Expect = 2.883e-11 Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0
Query: 192 KLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGL---PTAAKAYGFFYKQI 281
KLYVT + V DAFR +GVA ALL AV+ A G Y+CL+ + N +A RLY S Y V SP FA +GL AA+ Y F Y+++
Sbjct: 310 KLYVTGMMVVDAFRRQGVAAALLTAVEEYARGRGINYICLYVDAYNSSAQRLYQKSGYLVVPFSPQAEAFASKIGLYKGAYAARQYSFAYRRL 402
BLAST of EWM25101.1 vs. NCBI_GenBank
Match: gi|553184921|ref|XP_005854169.1| (gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526] >gi|553185591|ref|XP_005854272.1| gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526] >gi|422294790|gb|EKU22090.1| gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526] >gi|422294892|gb|EKU22192.1| gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 74.3294 bits (181), Expect = 4.236e-11 Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0
Query: 192 KLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGL---PTAAKAYGFFYKQI 281
KLYVT + V DAFR +GVA ALL AV+ A G Y+CL+ + N +A RLY S Y V SP FA +GL AA+ Y F Y+++
Sbjct: 265 KLYVTGMMVVDAFRRQGVAAALLTAVEEYARGRGINYICLYVDAYNSSAQRLYQKSGYLVVPFSPQAEAFASKIGLYKGAYAARQYSFAYRRL 357
BLAST of EWM25101.1 vs. NCBI_GenBank
Match: gi|1072227629|gb|OEU12368.1| (hypothetical protein FRACYDRAFT_244632 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 62.7734 bits (151), Expect = 2.814e-7 Identity = 55/196 (28.06%), Postives = 92/196 (46.94%), Query Frame = 0
Query: 99 IKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILD-RRAKGSLILIA----TARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVG-HSPSVNKFAGALGL---PTAAKAYGFFYKQISHPT 285
++ AS ++++ + LR VF+N P S+K R +L RR +G+ ++A +D P +IG+ E S HEF + R + LY+TE+ V R KG+A +L+A+D +A+ + L + N+ A LY ++ Y V +P N+F L L T + + K + PT
Sbjct: 306 VRMASHMDDV-DIANLRLSVFSN-FTPESLKIFCDRSCQLLSTRRQRGANCIVAKHSEDKKDGKGP-----VIGTAEISFHEFTETGLGYTRPKDSI--LYITEVAVDATHRRKGIAKLMLEAIDNVANIRDVETIYLHVDVTNVGAVHLYETAGYKIVASDNPIFNEFTKKLNLHDGATKGRNHHLLAKDLRRPT 492 The following BLAST results are available for this feature:
BLAST of EWM25101.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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