EWM25101.1, cds5552 (CDS) Nannochloropsis gaditana

Overview
NameEWM25101.1
Unique Namecds5552
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:301447..302445 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25101.1
Productgnat family
Orig transcript idgnl|cribi|Naga_100016g42.2910.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:301447..302445 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008080N-acetyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR000182GNAT_dom
IPR016181Acyl_CoA_acyltransferase
Homology
BLAST of EWM25101.1 vs. NCBI_GenBank
Match: gi|585106739|gb|EWM25101.1| (gnat family [Nannochloropsis gaditana])

HSP 1 Score: 680.633 bits (1755), Expect = 0.000e+0
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query:    1 MPRRPHRSAGQRLLSMTTLLLLNNALCPQICCEAFQPGHSAVVTQTSTTTRGFGVATATFRVKVHAHHTNAAEASRFRDVKEQQIQRLRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAELSRGIAEKGPVHSWALSIPSLSALRRPHSHACQIGPPSSL 332
            MPRRPHRSAGQRLLSMTTLLLLNNALCPQICCEAFQPGHSAVVTQTSTTTRGFGVATATFRVKVHAHHTNAAEASRFRDVKEQQIQRLRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAELSRGIAEKGPVHSWALSIPSLSALRRPHSHACQIGPPSSL
Sbjct:    1 MPRRPHRSAGQRLLSMTTLLLLNNALCPQICCEAFQPGHSAVVTQTSTTTRGFGVATATFRVKVHAHHTNAAEASRFRDVKEQQIQRLRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAELSRGIAEKGPVHSWALSIPSLSALRRPHSHACQIGPPSSL 332          
BLAST of EWM25101.1 vs. NCBI_GenBank
Match: gi|553196177|ref|XP_005856284.1| (gnat family, partial [Nannochloropsis gaditana CCMP526] >gi|422292762|gb|EKU20064.1| gnat family, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 514.227 bits (1323), Expect = 0.000e+0
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query:   81 KEQQIQRLRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAELSRGIAEKGPVHSWALSIPSLSALRRPHSHACQIGPPSSL 332
            KEQQIQRLRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAELSRGIAEKGPVHSWALSIPSLSALRRPHSHACQIGPPSSL
Sbjct:    1 KEQQIQRLRLRSPFLCVNIKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIATARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAELSRGIAEKGPVHSWALSIPSLSALRRPHSHACQIGPPSSL 252          
BLAST of EWM25101.1 vs. NCBI_GenBank
Match: gi|298708235|emb|CBJ48298.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.8702 bits (185), Expect = 1.040e-11
Identity = 62/231 (26.84%), Postives = 95/231 (41.13%), Query Frame = 0
Query:  103 SRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILDRRAKGSLILIAT---------------------------------------ARDLMSPFSDEVIIGSIECSTHEFDNG--ASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGLPTAAKAYGFFYKQISHPTTDHAEAE 292
            ++L++  A+ ++R  VF+     L  + R R    + +RR KG+  L+A                                        A  L +  SD  ++G++ECS HEFD    A       A + +LY+TE+ VR   R  GV   LL+ VD +A +L  + V L    +N AA RLY    Y E  +S S   F  +LGL              + P TD ++ +
Sbjct:  167 AKLDDYFAIADVRFDVFSPVHSTLKHRFRERSCLLMRERRRKGAFCLVAALDGPARVAAAAAAASDRAAASQREGGGVGLGEDPAASAAAAPLETAVSDGHVLGTLECSRHEFDGTPLAVEVEEQGAKIARLYLTEVAVRSDCRRMGVGRVLLELVDDVARALKTSEVFLHVNEINQAALRLYARCGYEEAPNSASNRAFTNSLGLSGGFIGQRHLLLHKTFPDTDGSDGD 397          
BLAST of EWM25101.1 vs. NCBI_GenBank
Match: gi|585107802|gb|EWM25931.1| (gcn5-related n-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 75.0998 bits (183), Expect = 2.883e-11
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0
Query:  192 KLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGL---PTAAKAYGFFYKQI 281
            KLYVT + V DAFR +GVA ALL AV+  A   G  Y+CL+ +  N +A RLY  S Y  V  SP    FA  +GL     AA+ Y F Y+++
Sbjct:  310 KLYVTGMMVVDAFRRQGVAAALLTAVEEYARGRGINYICLYVDAYNSSAQRLYQKSGYLVVPFSPQAEAFASKIGLYKGAYAARQYSFAYRRL 402          
BLAST of EWM25101.1 vs. NCBI_GenBank
Match: gi|553184921|ref|XP_005854169.1| (gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526] >gi|553185591|ref|XP_005854272.1| gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526] >gi|422294790|gb|EKU22090.1| gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526] >gi|422294892|gb|EKU22192.1| gcn5-related n-acetyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 74.3294 bits (181), Expect = 4.236e-11
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0
Query:  192 KLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVGHSPSVNKFAGALGL---PTAAKAYGFFYKQI 281
            KLYVT + V DAFR +GVA ALL AV+  A   G  Y+CL+ +  N +A RLY  S Y  V  SP    FA  +GL     AA+ Y F Y+++
Sbjct:  265 KLYVTGMMVVDAFRRQGVAAALLTAVEEYARGRGINYICLYVDAYNSSAQRLYQKSGYLVVPFSPQAEAFASKIGLYKGAYAARQYSFAYRRL 357          
BLAST of EWM25101.1 vs. NCBI_GenBank
Match: gi|1072227629|gb|OEU12368.1| (hypothetical protein FRACYDRAFT_244632 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 62.7734 bits (151), Expect = 2.814e-7
Identity = 55/196 (28.06%), Postives = 92/196 (46.94%), Query Frame = 0
Query:   99 IKPASRLEELLAVIELRAKVFANTLEPLSVKSRLRRIKHILD-RRAKGSLILIA----TARDLMSPFSDEVIIGSIECSTHEFDNGASPFLRDSADVCKLYVTELCVRDAFRGKGVATALLKAVDGIADSLGAAYVCLFCERLNLAASRLYISSNYHEVG-HSPSVNKFAGALGL---PTAAKAYGFFYKQISHPT 285
            ++ AS ++++  +  LR  VF+N   P S+K    R   +L  RR +G+  ++A      +D   P     +IG+ E S HEF      + R    +  LY+TE+ V    R KG+A  +L+A+D +A+      + L  +  N+ A  LY ++ Y  V   +P  N+F   L L    T  + +    K +  PT
Sbjct:  306 VRMASHMDDV-DIANLRLSVFSN-FTPESLKIFCDRSCQLLSTRRQRGANCIVAKHSEDKKDGKGP-----VIGTAEISFHEFTETGLGYTRPKDSI--LYITEVAVDATHRRKGIAKLMLEAIDNVANIRDVETIYLHVDVTNVGAVHLYETAGYKIVASDNPIFNEFTKKLNLHDGATKGRNHHLLAKDLRRPT 492          
The following BLAST results are available for this feature:
BLAST of EWM25101.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585106739|gb|EWM25101.1|0.000e+0100.00gnat family [Nannochloropsis gaditana][more]
gi|553196177|ref|XP_005856284.1|0.000e+0100.00gnat family, partial [Nannochloropsis gaditana CCM... [more]
gi|298708235|emb|CBJ48298.1|1.040e-1126.84conserved unknown protein [Ectocarpus siliculosus][more]
gi|585107802|gb|EWM25931.1|2.883e-1145.16gcn5-related n-acetyltransferase [Nannochloropsis ... [more]
gi|553184921|ref|XP_005854169.1|4.236e-1145.16gcn5-related n-acetyltransferase [Nannochloropsis ... [more]
gi|1072227629|gb|OEU12368.1|2.814e-728.06hypothetical protein FRACYDRAFT_244632 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5566rna5566Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications