rna5564, rna5564 (mRNA) Nannochloropsis gaditana

Overview
Namerna5564
Unique Namerna5564
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1835
Alignment locationCM002466.1:295565..297283 -

Link to JBrowse

Properties
Property NameValue
ProductZinc finger, RanBP2-type
Orig transcript idgnl|cribi|Naga_100016g44.2960.mrna
Orig protein idgnl|cribi|Naga_100016g44.2960
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:295565..297283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g44gene5377Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25151.1cds5550Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5564rna5564-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5564 ID=rna5564|Name=rna5564|organism=Nannochloropsis gaditana|type=mRNA|length=1835bp
TCATGATTTTACAGGGCTTGGCACCGCTGTGAAGATCCTATGACCAGATG
CATTGAACCAAGAGATGGTGGTCGGTACAAGCTCAAATTTCTTCACTCAA
ATTTTCACATGAAAGCTAGGGTGAAGACAGCTGTACTAATTTGTTGATGA
CGAAGACTGGCATAATCGAAGCGAAGTGAAACGGTTTGAGTGATACCAAT
AGAGTAGATGTTAACCATTAACCAAAGCACTGACCAAGAAGCTGGATCTG
GGCCTCTTACCGACGATAAAGGCGACCTACAAAGCCAGAATTTCGGCGCG
TCGAATCAATGTGTCGAGAACTCGACGCAACCGACAAGAAGCGGAGCAAT
GGGGCCGATGGGAGATCGTGCAAAAAAAGAGGATTGTTGTGTCATCTGCT
TCCAAGGAGAGTTCCAGTCTACCAACGAAATTGTGTACTGTGATGCGTGC
GACTTGGGTTTCCATCAGCAATGCTACGGATTGCCTAGGGTGCCCGAAGG
TGATTTCTTCTGCGACTTCTGCGCCATTGCCCGGGATATATCAAACACGG
ACAAAAGAATCGCTCCAATGTGTGAGCTTTGTCATCAAAAAGGCGGCGGT
CTTTTGAGGATATGGATAGTTGACCGTGGGGAAGGACAGTACTCCGATGA
GGACTACGTAAGGGACGGGAGCGAGGACGAAGACAACGATTGTGGCAGCA
CCTTTGAAGTAGCGGCCTGCATAAGGCCTAGTGATAAAGCAAATGCCTTC
GCATCAATTTCTACCTCCTTGCCAAATCCTTTGGCAGAGCCGCTCTTCGT
GCACAAGGTTTGCGCGCTAGCAGGTTGGAATCAACAGCCACGCCTGGTGC
GTTTCGTGGCAGGCACTAATGCTCAGGTGGCAGTAGTGTCGCGTGATATA
GTGGCGACATATCGCAACTTGAAGGCCCAGGAGGAAACTATGGCTTCACG
CTGGCAAGCTGCCGACGCGCTATCTTGCGGTATATGCGATTCCTCCGTGG
GACTGCTTGTCCGGTGCTGCCACCACGACCCTGACTCTGCGGTGTTCAGA
TGCTCTTTTTCCGCCCATGCGGCTTGTGCGTTCAACGCGGCCCAAGCATC
GCTCCTACTGCACGATGTACAGCGGTCGCCGCTGGTCACTGTGTGGTGCT
CAGCACACAGACCTGAACCGTCAGTGGAGCGACCGGGCGGGGACGCCGTG
GCCAAGTGTTTGGGTTTCCTGCTGCCTCCCTTAGCCTCACCCCTCGACCA
GCATGAGCAGGACGGGCGTCAGTATCAGCCTTGCCACACGCCGCTCCTAC
GGCACCTTGTTCACGAGCGGCGCAAGGAGGGCTACGGGCGACTGGGGGGC
TATCTAGACGACAAACTGAGACTCCTGGAGAGACGCATGTCGCTGGCAGG
GGCGTTACCCGTCCCGACCCACTCGACGGATGGCCGGTTGATCCTGTGCG
CGGCCGGGCGCGCGGAGGAGATGTTTGCCTGCAGGCAGCGGCTGCCCGCC
ACACCTGAGGTGCGAAGGTAGAGCTGAAGAAGAGCGTCAGAGGAAGCCTA
GGAAAGAAAAGACTTGCGTTTGCATTCGACTTCGTATACATTTTACAATT
TGCTTTGGCTTTCACGGGCTGTGCTCTCAATCAAGATCGCTCCTGCTAGC
CGCAGGGAGCCTTGCAAATGGGACAGGTGGCGTTGCACTGGAGGAGCCAG
CGGTCGATGCATTCCTTGTGATACATGTGCAGGCAAGGCAGGCGCCGAGT
CACGTCCCCCTCAGCAAAGTCTTCCATGCAGATGCTGCAGCCGTGGGTGT
CATTGATGCTTTCGCGCCGCATCCGCGCCACGTCT
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protein sequence of rna5564

>rna5564-protein ID=rna5564-protein|Name=rna5564|organism=Nannochloropsis gaditana|type=polypeptide|length=405bp
MKSNELIACSHSVLSEGNEAIPCETRSPVDIITPNASRTSQLNTPEQRLR
DEHNSDEGTTMIDLTGNSPGVVDISVHSPPSAIEATEDVRTAGGWSCDSG
EVSDRTDVHGEGVVREGHAQEGRCHTNTHGPMGSTGHGVDPAERGGEKGD
PGEDDSVQVQCPVCTFNNPPSMDLCQMCVHPLTIGLAGRVLHVQHGRVGG
GGRGRESGCGGAGDEDLPALWTCPLCTFCGNRRGNWVCQACEMGRPRRQD
MLDAESEEGYLMVSEGTVRGRAGRPGPRGRSPARAGGRVADTSMQTLEDV
VRGALLGSGVAGVGSAVAGGSRSEHRRRAFIGGVVGGLGAGLLGGVHAAD
EGGGGRHRLHVVRRLAFPVWAWARADQSDCCDRLRPPRDHRPGRRRGADA
ARKHQ
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mRNA from alignment at CM002466.1:295565..297283-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5564 ID=rna5564|Name=rna5564|organism=Nannochloropsis gaditana|type=mRNA|length=1719bp|location=Sequence derived from alignment at CM002466.1:295565..297283- (Nannochloropsis gaditana)
GATGCCCAAAGCCATGGCCACGGCCTCGACCTCGCCAGCCCTCGCTCCCG
TTCGGGTACACTCCTGTTTCCTGCCCGGCCGCGGGCCATTGTTTACTATG
AACACGCTGGGCATGGTTCTACGAATTGGATGACGGATCACGTTCACGTA
GTAAAAGTCGTTAAATGTCATTCCTCGCGTTTCTTCTTTTTTAAGATTTA
ACTTTGATTACACTTATCAGGTACTTGGTGAGAGCGACATATTTTTCCTC
AAGCAGCATTGGAAGGCCATAATCCCCATACATGAAAAGCAATGAGCTCA
TCGCCTGTAGTCATTCCGTTCTTTCTGAAGGGAACGAGGCCATACCCTGC
GAAACGCGTAGTCCCGTGGACATAATAACTCCCAACGCGTCAAGGACCTC
CCAGCTCAACACCCCCGAGCAACGCCTGCGAGACGAACACAACAGCGACG
AAGGAACGACTATGATTGATTTGACTGGCAACAGTCCAGGTGTCGTGGAT
ATCTCGGTGCATTCTCCTCCATCAGCCATCGAAGCGACAGAGGATGTGAG
AACGGCAGGCGGATGGAGTTGTGATTCAGGAGAAGTCTCCGACCGCACTG
ACGTGCATGGGGAGGGGGTAGTGCGGGAAGGACACGCTCAAGAGGGTAGA
TGCCACACCAACACGCATGGGCCTATGGGTAGTACGGGACATGGAGTGGA
CCCTGCCGAAAGAGGGGGAGAGAAAGGAGACCCTGGCGAGGACGACAGCG
TCCAGGTCCAGTGCCCCGTGTGCACATTTAACAACCCCCCGAGCATGGAC
CTGTGCCAGATGTGTGTGCATCCCTTGACAATAGGCCTAGCAGGGCGTGT
GCTGCATGTCCAGCACGGCCGAGTAGGTGGTGGTGGGAGGGGGAGAGAGA
GCGGTTGCGGGGGGGCGGGGGATGAGGACCTGCCTGCCTTGTGGACCTGT
CCCCTCTGCACGTTCTGCGGCAACCGGCGTGGCAACTGGGTGTGCCAGGC
GTGTGAGATGGGGCGTCCTCGGCGCCAGGACATGCTAGACGCCGAGAGCG
AGGAGGGCTACTTGATGGTGTCGGAGGGTACGGTCCGAGGGAGAGCGGGC
AGGCCGGGCCCCCGGGGCCGCAGTCCAGCCCGGGCGGGAGGGAGGGTCGC
CGATACCTCCATGCAGACGTTGGAGGATGTGGTGAGAGGGGCGCTCCTGG
GGTCTGGGGTGGCGGGAGTAGGGTCAGCTGTGGCCGGCGGCTCTCGCTCG
GAGCACAGACGCCGCGCTTTCATCGGGGGCGTGGTGGGAGGGCTGGGGGC
GGGGCTGTTGGGGGGGGTACATGCGGCGGATGAGGGAGGAGGGGGACGCC
ATAGACTCCATGTCGTACGACGACTTGCTTTCCCTGTTTGGGCCTGGGCA
CGAGCCGATCAAAGCGACTGCTGCGACCGTCTGCGCCCTCCCAGAGATCA
CCGTCCAGGCCGCAGACGTGGCGCGGATGCGGCGCGAAAGCATCAATGAC
ACCCACGGCTGCAGCATCTGCATGGAAGACTTTGCTGAGGGGGACGTGAC
TCGGCGCCTGCCTTGCCTGCACATGTATCACAAGGAATGCATCGACCGCT
GGCTCCTCCAGTGCAACGCCACCTGTCCCATTTGCAAGGCTCCCTGCGGC
TAGCAGGAGCGATCTTGATTGAGAGCACAGCCCGTGAAAGCCAAAGCAAA
TTGTAAAATGTATACGAAG
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Coding sequence (CDS) from alignment at CM002466.1:295565..297283-

>rna5564 ID=rna5564|Name=rna5564|organism=Nannochloropsis gaditana|type=CDS|length=1218bp|location=Sequence derived from alignment at CM002466.1:295565..297283- (Nannochloropsis gaditana)
ATGAAAAGCAATGAGCTCATCGCCTGTAGTCATTCCGTTCTTTCTGAAGG
GAACGAGGCCATACCCTGCGAAACGCGTAGTCCCGTGGACATAATAACTC
CCAACGCGTCAAGGACCTCCCAGCTCAACACCCCCGAGCAACGCCTGCGA
GACGAACACAACAGCGACGAAGGAACGACTATGATTGATTTGACTGGCAA
CAGTCCAGGTGTCGTGGATATCTCGGTGCATTCTCCTCCATCAGCCATCG
AAGCGACAGAGGATGTGAGAACGGCAGGCGGATGGAGTTGTGATTCAGGA
GAAGTCTCCGACCGCACTGACGTGCATGGGGAGGGGGTAGTGCGGGAAGG
ACACGCTCAAGAGGGTAGATGCCACACCAACACGCATGGGCCTATGGGTA
GTACGGGACATGGAGTGGACCCTGCCGAAAGAGGGGGAGAGAAAGGAGAC
CCTGGCGAGGACGACAGCGTCCAGGTCCAGTGCCCCGTGTGCACATTTAA
CAACCCCCCGAGCATGGACCTGTGCCAGATGTGTGTGCATCCCTTGACAA
TAGGCCTAGCAGGGCGTGTGCTGCATGTCCAGCACGGCCGAGTAGGTGGT
GGTGGGAGGGGGAGAGAGAGCGGTTGCGGGGGGGCGGGGGATGAGGACCT
GCCTGCCTTGTGGACCTGTCCCCTCTGCACGTTCTGCGGCAACCGGCGTG
GCAACTGGGTGTGCCAGGCGTGTGAGATGGGGCGTCCTCGGCGCCAGGAC
ATGCTAGACGCCGAGAGCGAGGAGGGCTACTTGATGGTGTCGGAGGGTAC
GGTCCGAGGGAGAGCGGGCAGGCCGGGCCCCCGGGGCCGCAGTCCAGCCC
GGGCGGGAGGGAGGGTCGCCGATACCTCCATGCAGACGTTGGAGGATGTG
GTGAGAGGGGCGCTCCTGGGGTCTGGGGTGGCGGGAGTAGGGTCAGCTGT
GGCCGGCGGCTCTCGCTCGGAGCACAGACGCCGCGCTTTCATCGGGGGCG
TGGTGGGAGGGCTGGGGGCGGGGCTGTTGGGGGGGGTACATGCGGCGGAT
GAGGGAGGAGGGGGACGCCATAGACTCCATGTCGTACGACGACTTGCTTT
CCCTGTTTGGGCCTGGGCACGAGCCGATCAAAGCGACTGCTGCGACCGTC
TGCGCCCTCCCAGAGATCACCGTCCAGGCCGCAGACGTGGCGCGGATGCG
GCGCGAAAGCATCAATGA
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Synonyms
Publications