EWM25151.1, cds5550 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25151.1
Unique Name	cds5550
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:295785..297002 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25151.1
Product	Zinc finger, RanBP2-type
Orig transcript id	gnl\|cribi\|Naga_100016g44.2960.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:295785..297002 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001876	Znf_RanBP2

Homology

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BLAST of EWM25151.1 vs. NCBI_GenBank
Match: gi|585106789|gb|EWM25151.1| (Zinc finger, RanBP2-type [Nannochloropsis gaditana])

HSP 1 Score: 806.979 bits (2083), Expect = 0.000e+0
Identity = 405/405 (100.00%), Postives = 405/405 (100.00%), Query Frame = 0

Query:    1 MKSNELIACSHSVLSEGNEAIPCETRSPVDIITPNASRTSQLNTPEQRLRDEHNSDEGTTMIDLTGNSPGVVDISVHSPPSAIEATEDVRTAGGWSCDSGEVSDRTDVHGEGVVREGHAQEGRCHTNTHGPMGSTGHGVDPAERGGEKGDPGEDDSVQVQCPVCTFNNPPSMDLCQMCVHPLTIGLAGRVLHVQHGRVGGGGRGRESGCGGAGDEDLPALWTCPLCTFCGNRRGNWVCQACEMGRPRRQDMLDAESEEGYLMVSEGTVRGRAGRPGPRGRSPARAGGRVADTSMQTLEDVVRGALLGSGVAGVGSAVAGGSRSEHRRRAFIGGVVGGLGAGLLGGVHAADEGGGGRHRLHVVRRLAFPVWAWARADQSDCCDRLRPPRDHRPGRRRGADAARKHQ 405
            MKSNELIACSHSVLSEGNEAIPCETRSPVDIITPNASRTSQLNTPEQRLRDEHNSDEGTTMIDLTGNSPGVVDISVHSPPSAIEATEDVRTAGGWSCDSGEVSDRTDVHGEGVVREGHAQEGRCHTNTHGPMGSTGHGVDPAERGGEKGDPGEDDSVQVQCPVCTFNNPPSMDLCQMCVHPLTIGLAGRVLHVQHGRVGGGGRGRESGCGGAGDEDLPALWTCPLCTFCGNRRGNWVCQACEMGRPRRQDMLDAESEEGYLMVSEGTVRGRAGRPGPRGRSPARAGGRVADTSMQTLEDVVRGALLGSGVAGVGSAVAGGSRSEHRRRAFIGGVVGGLGAGLLGGVHAADEGGGGRHRLHVVRRLAFPVWAWARADQSDCCDRLRPPRDHRPGRRRGADAARKHQ
Sbjct:    1 MKSNELIACSHSVLSEGNEAIPCETRSPVDIITPNASRTSQLNTPEQRLRDEHNSDEGTTMIDLTGNSPGVVDISVHSPPSAIEATEDVRTAGGWSCDSGEVSDRTDVHGEGVVREGHAQEGRCHTNTHGPMGSTGHGVDPAERGGEKGDPGEDDSVQVQCPVCTFNNPPSMDLCQMCVHPLTIGLAGRVLHVQHGRVGGGGRGRESGCGGAGDEDLPALWTCPLCTFCGNRRGNWVCQACEMGRPRRQDMLDAESEEGYLMVSEGTVRGRAGRPGPRGRSPARAGGRVADTSMQTLEDVVRGALLGSGVAGVGSAVAGGSRSEHRRRAFIGGVVGGLGAGLLGGVHAADEGGGGRHRLHVVRRLAFPVWAWARADQSDCCDRLRPPRDHRPGRRRGADAARKHQ 405

The following BLAST results are available for this feature:

BLAST of EWM25151.1 vs. NCBI_GenBank

BLAST of EWM25151.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106789\|gb\|EWM25151.1\|	0.000e+0	100.00	Zinc finger, RanBP2-type [Nannochloropsis gaditana...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5564	rna5564	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications