rna5561, rna5561 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5561
Unique Name	rna5561
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2230
Alignment location	CM002466.1:290747..292321 +

Link to JBrowse

Properties


Property Name	Value
Product	appr-1-p processing enzyme family protein
Orig transcript id	gnl\|cribi\|Naga_100016g47.2901.mrna
Orig protein id	gnl\|cribi\|Naga_100016g47.2901
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:290747..292321 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g47	gene5374	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5561	rna5561-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25092.1	cds5547	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:290747..292321+
coding sequence from alignment at CM002466.1:290747..292321+

mRNA sequence

>rna5561 ID=rna5561|Name=rna5561|organism=Nannochloropsis gaditana|type=mRNA|length=2230bp
ATCACCCTGCTGTGACCTTTCTCTGCCGTTGGTGTCCTTGACACACGCCC
CTGATGGCAGCTCTTTTCTTTTTCGATCATGCCGTCTCGCCGATCGCTGT
CGAAGTCGAGGCTCTAGTTCTTTCTCTGACTTACGTGACTTCGTCGACAG
TACATTCGATGTTCTCCCTGCGAACACCGTGAGGCGAAGTCCGGGATCCT
CTGTGTCGTGCTACAAGTGTTCTTCAATAAACTGGCCACATACGTTTCCG
CGCTGCTCGGTCCAAAAGTCTGTGAAGCGTGCGCCCCCCCAAGGGACAGC
AACCATTTTTGAAATTACCATGCTCCTCTGCATTCGTTTTAATAGATCTT
GATCCACGCTAGCATTCAATGAAGAACCGATCAACAGCAATTGAATACCT
AGCCTTTATCCTGTCTTAAAGTGCGTCTGCCTGTGCCCGCGTTAAGTCGT
TCACGCCCTCTTTGTTGTCCTTTTACCCAAGGAGCCCTCATACTCCTCTT
TTCATCGAACCACTCGCACAGGCATCTTCTTTATCTGTTTTCCGGTTCGC
AAGCAAAAATGATTAGTCGTGGATTGCTTGCCGTAGGCCTACTGACAGCT
TCGACTTCTGCAACGGTGTATTTCACAGAGAATTTCGACGATAAATGGGA
GAGCCGGTGGGTGGTGCCCAGCAAGTGGAAGGCAGCTGAGGAGATTGGTG
AATGGGCCCACACTGCAGGAGAGTGGTTCGGAGACGCCGCGGACAAGGGC
ATCAAAACCTCCCAGGACGCCCGCTTCTACGGGCTGTCCGCCAAGCTGGC
CAAACCCTTCTCGAATGAAGGCAAGGACCTGGTCTTGCAGTACGTGGTGA
AGCACGAGCAGCGTTTGGACTGCGGAGGCGCCTACATTAAATTGCTGGGA
CCTGAGCTCGACCAGGCTTCCTTCGGGGGCGACACCCCTTACCAGATCAT
GTTTGGGCCCGACGTGTGCGGATCCACCAAGCGCACGCATGTGATTTTTA
ACTACCCCGAGGCGAAGGGCGAGGACAAGAACCTACTGATCAAGACGGAC
GTGCCCACCCGCACGGACCAACTCAGCCACCTGTACACCCTGCACATCAT
GGCTGCCAACAACTCCTTCAACGTCTTGATCGACGGTGAGTCCGTGCGTG
AGGGCTCCCTGGAGGAGTCCTGGGACTTCCGGCCCCCCAAGACCATCCCC
GACCCTGAGCAGAGCAAGCCGGCGGACTGGGTGGACGAGGAGATGATGGC
GGATCCCGCGGACGTCAAGCCGGAGGGGTACGACGACATCCCTGCCACCC
TGCCCGATTCGGAGGCCGTCCAGCCCGAGGACTGGGACGAGGAGGAGGAC
GGCGTCTGGGAGGCGCCCATGGTGGACAATCCCGACTACAAGGGCCCCTG
GTCCCCCAAGATGATCCCCAACCCGGACTACAAGGGCGCATGGGAACACC
CGCACATTCCTAACCCCGAATACTCGCCCGACCCCAAGCTGCACGCCCGT
GCCACGGAGGTGACGGCCGTCGGCTTCGAGCTTTGGCAGGTGAAATCGGG
CACCATGTTCGACGACATCATCCTGACAGATTCGCTGGATGAGGCCACCG
AATACGCCAAGGAGACCTTCTGGAAGAAGCAGGAGGGCGAGAAGGCCATG
TTTGAGAAGGCTGAAGAAGAACGAGTGGAGAAGGAGAAGGCGGAGCGTGA
GGAGATGAAGAAGAAGGCGGAAGAGAACGGGGAACCCTTCGAAGAGGGGG
ACAGCCCATTCTCTGTCTCCGACATGGAAATCACAGAGGACGAGGACGAG
GATGATGAGGACTGGGAGGATGAGGAGGAAGAGGATGACGAGAACTCCTT
TACCATGGAGCTCTAAGAGCGAAATGACTTTTCTCTCAGTGTAAACTCCT
GATTTTCTCGTGGTCGTCTTGTGGGAGGTAGCATCTCGAGGTTTGTCGCA
AATTATGAGTGTGCGCCTCCTTTATGAGGCATGAAAGCTGTTTTGTTACG
AAATGATGCGATGAGTGGCGCGCCGTAGACACCAGGAAAATGTGAGTTTT
CTGCTTAAAGCGAGAACCGATTGCATCAGCCATCACAAAGCCCGAGCGTG
GCTCCCTCCTCTCGCCTCGGAGGATGCCGGGGAAGAGGATTGCAGTCGTT
TTCAGGGTTATCAGGGCTTAATGTCAATCATAGAATTAAAATGAAACCCG
AAAAGCGCGTACATGTTTTTTGCTTGCATC

protein sequence of rna5561

>rna5561-protein ID=rna5561-protein|Name=rna5561|organism=Nannochloropsis gaditana|type=polypeptide|length=245bp
MADCGGKAAASILRRSFPLSNRISLQISVGDLTKCSVDAIVNAANERMLG
GGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYV
VHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYP
VSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLVH
RSTRTSAENESRGRETSTSSGSASSEVDFDPRTRGEKEKCENADI

mRNA from alignment at CM002466.1:290747..292321+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5561 ID=rna5561|Name=rna5561|organism=Nannochloropsis gaditana|type=mRNA|length=1575bp|location=Sequence derived from alignment at CM002466.1:290747..292321+ (Nannochloropsis gaditana)
TGAGGCTGGCCGAGCGCTTGCCCGTGCACAGCAGGTGCGCATCAGGACGC
CTGAACAGGCGTTGTCGATATGTCAACAGTACCCACACGACCAATGCACA
GTCGCTTTTGATAGGTGAGACGGGAATCAAATCATTTTGTAACCTCCTAC
CTTTTGCTCATGATAGTCCACCTGACGAGGTTCTGCAGGCATCAACTGCA
ATAGCATTTCGACCATTGCAGCCTTTGAAACCGGTAACGACTTCACAAGC
CGAGAGGTAGAAACGAAAAAAAGCTCGCGGAGGTTCGCGCCTCTGTGTGT
CGGCTACTTCGCCTTCGCAATTTTCTTTCTTACAATGGCGGATTGCGGAG
GCAAGGCCGCAGCATCTATTCTAAGACGGAGTTTCCCTCTGAGCAATCGG
ATAAGCCTCCAGATAAGCGTCGGAGATCTGACAAAGTGCTCCGTAGACGC
AATCGTAAATGCGGCGAACGAACGCATGCtgggtggcggtggagtgGACG
GGGCTGTGCACAGAGCTGCAGGGCCCCAATTGTACGAGGCATGTAGAGCT
GTCCCAGAGGTACGCCCAGGTGTGAGGTGCCCTACAGGGGAGGCCCGCAT
AACGCCAGGATTCAAATTGCCTGCCCGGTATGTTGTGCATACTGTCGGAC
CAATATATAAAAATGACAATGAGTCTGCGGCCTTGCTCCGCGCCAGCCAC
CTAAGTTCTCTTGATCTGGCTGTGAAACAAGGGCTGACGTCGGTGGCATT
TCCGGCCGTTTCATGCGGTATCTATGGATATCCTGTCAGCAGAGCTTCAC
ACATAGCTGTCAAATCTTGTATCGACTTTGGCGACGAACAggtgagagga
aggaggttgagAGAGGGCGGACCCTGCTGTCGGTTGGTCAATGGGTAGGA
CCTGTCATGAAGCATCATCTCTTCGCTTTATCCGTCTCATGAGCCTGACC
GGTTCTTCTCCTCAATCCAGGGTTTGAACTCACCGTTACGAAACATTGAA
tttgtcctcttctctcAAGACATATACAACGCCTGGGTCGCAGCCGCTGA
GGATCTTGTCCATCGTTCCACGCGTACTTCAGCCGAAAATGAATCTCGAG
GCCGCGAGACGTCGACTTCATCTGGCTCGGCGAGTTCTGAAGTCGATTTC
GACCCGCGGACTCGcggcgaaaaagaaaaatgcgaGAACGCCGACATCTG
AGACAACTTGTATATCCACAGATGTCTGCCGGCTTGGTTTGAGGCAATAA
GTGCGACAAACAGCACTTCCGTGGTCCAACATGTGTTTGTAAGGGAACGT
CGTATCATGCAAAAAAATAAGAAAGGATGaaattttcaaaaattgTGGAA
TGCCAGGGTTGTGAAATCCGAGTCTGCGGACAAGTCCGAGAAAAAActtg
gggaggaaagaatgcTACGAAGAAGCGAAATAAGTAGATGTTCACGGGAT
ATAAGGATAGAAAATAGCTCAAGACAATGAGTGCGAATTGTCACATTTTA
AGAGGTACCATGTCTTGGGAGTCATCGTTAGAAAACATGCTCTGGAAAAG
CATGAAGCACTTCAGACGATACCCT

Coding sequence (CDS) from alignment at CM002466.1:290747..292321+

>rna5561 ID=rna5561|Name=rna5561|organism=Nannochloropsis gaditana|type=CDS|length=1476bp|location=Sequence derived from alignment at CM002466.1:290747..292321+ (Nannochloropsis gaditana)
ATGGCGGATTGCGGAGGCAAGGCCGCAGCATCTATTCTAAGACGGAGTTT
CCCTCTGAGCAATCGGATAAGCCTCCAGATAAGCGTCGGAGATCTGACAA
AGTGCTCCGTAGACGCAATCGTAAATGCGGCGAACGAACGCATGCtgggt
ggcggtggagtgGACGGGGCTGTGCACAGAGCTGCAGGGCCCCAATTGTA
CGAGGCATGTAGAGCTGTCCCAGAGGTACGCCCAGGTGTGAGGTGCCCTA
CAGGGGAGGCCCGCATAACGCCAGGATTCAAATTGCCTGCCCGGTATGTT
GTGCATACTGTCGGACCAATATATAAAAATGACAATGAGTCTGCGGCCTT
GCTCCGCGCCAGCCACCTAAGTTCTCTTGATCTGGCTGTGAAACAAGGGC
TGACGTCGGTGGCATTTCCGGCCGTTTCATGCGGTATCTATGGATATCCT
GTCAGCAGAGCTTCACACATAGCTGTCAAATCTTGTATCGACTTTGGCGA
CGAACAgGGTTTGAACTCACCGTTACGAAACATTGAAtttgtcctcttct
ctcAAGACATATACAACGCCTGGGTCGCAGCCGCTGAGGATCTTGTCCAT
CGTTCCACGCGTACTTCAGCCGAAAATGAATCTCGAGGCCGCGAGACGTC
GACTTCATCTGGCTCGGCGAGTTCTGAAGTCGATTTCGACCCGCGGACTC
GcggcgaaaaagaaaaatgcgaGAACGCCGACATCTGAATGGCGGATTGC
GGAGGCAAGGCCGCAGCATCTATTCTAAGACGGAGTTTCCCTCTGAGCAA
TCGGATAAGCCTCCAGATAAGCGTCGGAGATCTGACAAAGTGCTCCGTAG
ACGCAATCGTAAATGCGGCGAACGAACGCATGCtgggtggcggtggagtg
GACGGGGCTGTGCACAGAGCTGCAGGGCCCCAATTGTACGAGGCATGTAG
AGCTGTCCCAGAGGTACGCCCAGGTGTGAGGTGCCCTACAGGGGAGGCCC
GCATAACGCCAGGATTCAAATTGCCTGCCCGGTATGTTGTGCATACTGTC
GGACCAATATATAAAAATGACAATGAGTCTGCGGCCTTGCTCCGCGCCAG
CCACCTAAGTTCTCTTGATCTGGCTGTGAAACAAGGGCTGACGTCGGTGG
CATTTCCGGCCGTTTCATGCGGTATCTATGGATATCCTGTCAGCAGAGCT
TCACACATAGCTGTCAAATCTTGTATCGACTTTGGCGACGAACAgGGTTT
GAACTCACCGTTACGAAACATTGAAtttgtcctcttctctcAAGACATAT
ACAACGCCTGGGTCGCAGCCGCTGAGGATCTTGTCCATCGTTCCACGCGT
ACTTCAGCCGAAAATGAATCTCGAGGCCGCGAGACGTCGACTTCATCTGG
CTCGGCGAGTTCTGAAGTCGATTTCGACCCGCGGACTCGcggcgaaaaag
aaaaatgcgaGAACGCCGACATCTGA

Synonyms

Publications