EWM25092.1, cds5547 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25092.1 vs. NCBI_GenBank
Match: gi|585106730|gb|EWM25092.1| (appr-1-p processing enzyme family protein [Nannochloropsis gaditana]) HSP 1 Score: 501.901 bits (1291), Expect = 1.061e-179 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
Query: 1 MADCGGKAAASILRRSFPLSNRISLQISVGDLTKCSVDAIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLVHRSTRTSAENESRGRETSTSSGSASSEVDFDPRTRGEKEKCENADI 245
MADCGGKAAASILRRSFPLSNRISLQISVGDLTKCSVDAIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLVHRSTRTSAENESRGRETSTSSGSASSEVDFDPRTRGEKEKCENADI
Sbjct: 1 MADCGGKAAASILRRSFPLSNRISLQISVGDLTKCSVDAIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLVHRSTRTSAENESRGRETSTSSGSASSEVDFDPRTRGEKEKCENADI 245
BLAST of EWM25092.1 vs. NCBI_GenBank
Match: gi|553196255|ref|XP_005856302.1| (hypothetical protein NGA_2111400, partial [Nannochloropsis gaditana CCMP526] >gi|422292780|gb|EKU20082.1| hypothetical protein NGA_2111400, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 502.286 bits (1292), Expect = 2.520e-179 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
Query: 1 MADCGGKAAASILRRSFPLSNRISLQISVGDLTKCSVDAIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLVHRSTRTSAENESRGRETSTSSGSASSEVDFDPRTRGEKEKCENADI 245
MADCGGKAAASILRRSFPLSNRISLQISVGDLTKCSVDAIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLVHRSTRTSAENESRGRETSTSSGSASSEVDFDPRTRGEKEKCENADI
Sbjct: 36 MADCGGKAAASILRRSFPLSNRISLQISVGDLTKCSVDAIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLVHRSTRTSAENESRGRETSTSSGSASSEVDFDPRTRGEKEKCENADI 280
BLAST of EWM25092.1 vs. NCBI_GenBank
Match: gi|1009121598|ref|XP_015877544.1| (PREDICTED: macro domain-containing protein VPA0103-like isoform X1 [Ziziphus jujuba] >gi|1009121600|ref|XP_015877545.1| PREDICTED: macro domain-containing protein VPA0103-like isoform X2 [Ziziphus jujuba]) HSP 1 Score: 219.935 bits (559), Expect = 1.789e-68 Identity = 102/190 (53.68%), Postives = 137/190 (72.11%), Query Frame = 0
Query: 17 FPLSNRISLQISVGDLTKC----SVDAIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLVHRS 202
FPLS S+ I GD+TK S DAIVNAA ERMLGGGGVDGA+HRAAGP L +AC VPEVRPGVRCPTGEARITPGF+LP YV+HTVGPIY+ +++ A L++++ +SL +A + + VAFPA+SCG+YGYP A+ I++ + +F ++ + + FVL+++DIYN W+ A +L+ S
Sbjct: 57 FPLSPSYSIVIQRGDITKWFVDGSTDAIVNAAEERMLGGGGVDGAIHRAAGPDLLQACYNVPEVRPGVRCPTGEARITPGFQLPVSYVIHTVGPIYETNSDPEAFLKSAYSNSLKVAKENNVQYVAFPAISCGVYGYPYEEAATISISTVKEFAND------FKEVHFVLYNEDIYNVWLKKANELLQSS 240
BLAST of EWM25092.1 vs. NCBI_GenBank
Match: gi|1009121608|ref|XP_015877549.1| (PREDICTED: macro domain-containing protein VPA0103-like [Ziziphus jujuba]) HSP 1 Score: 219.935 bits (559), Expect = 2.083e-68 Identity = 102/190 (53.68%), Postives = 137/190 (72.11%), Query Frame = 0
Query: 17 FPLSNRISLQISVGDLTKC----SVDAIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLVHRS 202
FPLS S+ I GD+TK S DAIVNAA ERMLGGGGVDGA+HRAAGP L +AC VPEVRPGVRCPTGEARITPGF+LP YV+HTVGPIY+ +++ A L++++ +SL +A + + VAFPA+SCG+YGYP A+ I++ + +F ++ + + FVL+++DIYN W+ A +L+ S
Sbjct: 57 FPLSPSYSIVIQRGDITKWFVHGSTDAIVNAAEERMLGGGGVDGAIHRAAGPDLLQACYNVPEVRPGVRCPTGEARITPGFQLPVSYVIHTVGPIYETNSDPEAFLKSAYSNSLKVAKENNVQYVAFPAISCGVYGYPYEEAATISISTVKEFAND------FKEVHFVLYNEDIYNVWLKKANELLQSS 240
BLAST of EWM25092.1 vs. NCBI_GenBank
Match: gi|802778445|ref|XP_012091148.1| (uncharacterized protein LOC105649184 isoform X1 [Jatropha curcas]) HSP 1 Score: 218.394 bits (555), Expect = 2.461e-67 Identity = 102/187 (54.55%), Postives = 137/187 (73.26%), Query Frame = 0
Query: 17 FPLSNRISLQISVGDLTKCSVD----AIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLV 199
FPLS+ L+I+ GD+TK VD AIVN ANERMLGGGG DGA+HRAAGP+L +AC VPEV+PG+RCPTGEARITPGFKLPA +V++TVGPIY D+ AA L+ ++ +SL +A + +AFPA+SCG+YGYP A+ +++ + +F D+ L+ + FVLFS DIYN W+ A++L+
Sbjct: 97 FPLSSSSVLKINKGDITKWFVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELLDACYKVPEVQPGIRCPTGEARITPGFKLPASHVIYTVGPIYDTDSNPAASLKNAYRNSLTVAKDNNIKYIAFPAISCGVYGYPYEEAAAVSISTIKEFKDD------LKEVHFVLFSDDIYNVWLKKAKELL 277
BLAST of EWM25092.1 vs. NCBI_GenBank
Match: gi|552829028|ref|XP_005847605.1| (hypothetical protein CHLNCDRAFT_23080 [Chlorella variabilis] >gi|307107260|gb|EFN55503.1| hypothetical protein CHLNCDRAFT_23080 [Chlorella variabilis]) HSP 1 Score: 214.927 bits (546), Expect = 4.561e-67 Identity = 106/168 (63.10%), Postives = 125/168 (74.40%), Query Frame = 0
Query: 30 GDLTKCSVDAIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAED 197
GDLTK + DAIVNAANERMLGGGGVDGA+HRAAGP L EACR VPEVR GVRCPTGEAR+T G LPAR V+HTVGP+Y N SA LL +++ SSL LA + GL +VAFPA+SCGI+GYP A+ IAV++C Q L+ I F LF Q I +AW+ AAE+
Sbjct: 21 GDLTKFAGDAIVNAANERMLGGGGVDGAIHRAAGPSLLEACRQVPEVRQGVRCPTGEARMTTGAGLPARNVIHTVGPVYHNAEASAPLLESAYRSSLQLANQHGLKTVAFPAISCGIFGYPFDEAAEIAVRTC------QQEAGQLQEIHFFLFGQPILDAWLQAAEE 182
BLAST of EWM25092.1 vs. NCBI_GenBank
Match: gi|255559685|ref|XP_002520862.1| (PREDICTED: macro domain-containing protein VPA0103 [Ricinus communis] >gi|223539993|gb|EEF41571.1| Protein LRP16, putative [Ricinus communis]) HSP 1 Score: 217.238 bits (552), Expect = 5.917e-67 Identity = 100/187 (53.48%), Postives = 137/187 (73.26%), Query Frame = 0
Query: 17 FPLSNRISLQISVGDLTKCSVD----AIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLV 199
FPLS+ L+I+ GD+TK VD AIVN ANE+MLGGGG DGA+HRAAGP+L +AC VPEVRPG+RCPTGEARITPGFKLPA +V+HTVGPIY + SAA+L+ ++ +SL +A + +AFPA+SCG+Y YP A+ +++ + +F D+ ++ + FVLFS +I+N WV A++L+
Sbjct: 87 FPLSSSSVLKINKGDITKWFVDGSSDAIVNPANEKMLGGGGADGAIHRAAGPELVDACYKVPEVRPGIRCPTGEARITPGFKLPASHVIHTVGPIYDANRNSAAILKNAYRNSLSVAKDNNIKFIAFPAISCGVYLYPFEEAASVSISTIKEFADD------IKEVHFVLFSDEIFNVWVKKAKELL 267
BLAST of EWM25092.1 vs. NCBI_GenBank
Match: gi|1021586016|ref|XP_016182334.1| (uncharacterized protein LOC107624347 isoform X1 [Arachis ipaensis]) HSP 1 Score: 214.542 bits (545), Expect = 6.251e-67 Identity = 104/187 (55.61%), Postives = 134/187 (71.66%), Query Frame = 0
Query: 17 FPLSNRISLQISVGDLTKCSVD----AIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLV 199
FPLS SL I GD+TK S+D AIVN ANERMLGGGG DGA+H AAGP+L +AC +VPEVRPG+RCPTGEARITPGF+LPA +VVHTVGPIY +++ AA L +++ +SL +A + + +AFPA+SCG++GYP A+ +A+ +F +E + I FVLF QDIY WV A DL+
Sbjct: 17 FPLSPSSSLVIQKGDITKWSIDGSSDAIVNPANERMLGGGGADGAIHMAAGPELVQACYSVPEVRPGIRCPTGEARITPGFRLPASHVVHTVGPIYNSNSNPAASLSSAYRNSLRVAKDKNIQYIAFPAISCGVFGYPYDEAATVAISVVREFRNE------FKEIHFVLFLQDIYQVWVNKANDLM 197
BLAST of EWM25092.1 vs. NCBI_GenBank
Match: gi|502124370|ref|XP_004498498.1| (PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2 [Cicer arietinum]) HSP 1 Score: 215.312 bits (547), Expect = 7.816e-67 Identity = 101/187 (54.01%), Postives = 135/187 (72.19%), Query Frame = 0
Query: 17 FPLSNRISLQISVGDLTKCSVD----AIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLV 199
FPLS+ +L I GD+TK S+D AIVN ANERMLGGGG DGA+HRAAGP L ACR VPEVRPG+RCPTGEARITPGF LPA +V+HTVGPIY DN AA L +++ +SL +A + + +AFPA+SCG+YGYP A+ +A+ + +F ++ + + FVLF+ DIY+ W+ +++L+
Sbjct: 48 FPLSSSSALIIQKGDITKWSIDGSTDAIVNPANERMLGGGGADGAIHRAAGPDLLRACRNVPEVRPGIRCPTGEARITPGFLLPASHVIHTVGPIYNADNNPAASLASAYRNSLRVAKESNIQYIAFPAISCGVYGYPYDEAATVAISTIKEFQND------FKEVHFVLFASDIYDIWLNKSDELL 228
BLAST of EWM25092.1 vs. NCBI_GenBank
Match: gi|731320101|ref|XP_010670626.1| (PREDICTED: uncharacterized protein LOC104887643 [Beta vulgaris subsp. vulgaris] >gi|870865744|gb|KMT16782.1| hypothetical protein BVRB_2g042690 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 216.083 bits (549), Expect = 7.955e-67 Identity = 104/187 (55.61%), Postives = 134/187 (71.66%), Query Frame = 0
Query: 19 LSNRISLQISVGDLTKCSVD----AIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLVHR 201
LS SL+I GD+T+ S+D AIVNAANERMLGGGGVDGA+HRAAGP+L EAC VPEVRPGVRCPTGEARITPGF+LPA +V+HTVGPIY LL+ ++ +SL +A + + +AFPA+SCG+YGYP A+ IAV + +F ++ + + FVLFS DIYN W+ A+ +V +
Sbjct: 65 LSPSSSLKIQKGDITQWSIDGSSDAIVNAANERMLGGGGVDGAIHRAAGPELKEACYKVPEVRPGVRCPTGEARITPGFRLPASHVIHTVGPIYDVVQNPEVLLKNAYRNSLMVAKENNIQYIAFPAISCGVYGYPFDEAATIAVSTVEEFAND------FKEVSFVLFSDDIYNVWLDKAKAIVEK 245 The following BLAST results are available for this feature:
BLAST of EWM25092.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|