rna5560, rna5560 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5560
Unique Name	rna5560
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2080
Alignment location	CM002466.1:288303..290532 -

Link to JBrowse

Properties


Property Name	Value
Product	calreticulin precursor
Orig transcript id	gnl\|cribi\|Naga_100016g48.2914.mrna
Orig protein id	gnl\|cribi\|Naga_100016g48.2914
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:288303..290532 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g48	gene5373	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25105.1	cds5546	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5560	rna5560-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:288303..290532-
coding sequence from alignment at CM002466.1:288303..290532-

mRNA sequence

>rna5560 ID=rna5560|Name=rna5560|organism=Nannochloropsis gaditana|type=mRNA|length=2080bp
CGAGAGCTGGTGTGAAGCCAGCAAAATGCATTTGATGCGCACCCACACGC
CTTCTTGGGGTCGCCAAGCCTGTAGGAGGATCGTTTCTGCACCATGGTGT
CAGCCGCACACTTTTTGATTCACTTGTGATGTCTCCATGGGTATCTACTA
ACGGAAAACTGATGACATCTTCAGGCGCGTCGGTGAGAGAATGGCACCCA
CTAAGGTGCAAATCAAGTGGAATAAGCAGACTTTCTCTGAAGTTCCGCTT
GACACAACGGGAACTGCGCTGACTTTCAAACAGCATGTCTACGAACTAAC
GGGGGTTCCAGTACCGCGGCAAAAACTGATGTGTAAGGGAGCGTGGAAGC
TGGCTCTCAAGGATGACGACGACTTGTCAAAGCTTTCAATCAAGGATGGT
GCGGCGGTGACGCTCATAGGAACAGCAGATGTGGTCAAGGAGCCAGTAGA
GAAGGTGGTTTTTGTCGAAGACATGGCACAGGCGGATCAGGCCAAGACGG
GCGCCATTCTTCCTGCGGGACTGCGCAATCTAGGCAACACCTGCTACCTC
AATTCGACGTTACAATGTCTCCGGTACGTACCAGAGCTTCGACAGGCTTT
AAACAGGTACACTGGGACGGGCGCCAACGAGCAACCATTTTTGACGAATG
CCCTTAAGGACACGTTCAATCTACTCGATGGCAACACGGAACCTGTGCCC
CCTATGCAATTCGTCATGTTGCTGCGCCAGCAGTTCCCTCAGTTCGCCCA
GCAGTCTCGCGGTCACTTCATGCAGCAAGATGCCGACGAATTCATGAACG
AGCTTTTGACGTCGCTCGCGGCCAACCTGCGCGACGCGTACGGGCTCCCC
TCTCTGGAGGACGCCGGGAATTTCGTCGACGCCTTGTTTGGGATGGAAGT
GGAGGACACGTTATCCTGTGCCGAGTCGGAGGCCGAGAAACCGGTCGTGA
AGAGAGATCATGTACGGAAGCTGGTCTGCAACATCCAGGGCGGTGCTGGC
AGCGACGTGAAGATCAACTATCTGCATGAGGGGGTGAAGTTGGCCTTGGA
GGGGACGATCGAGAAGCAGAGCGAGGTTCTGGGGCGCGACGCGGTCTGGA
ATAAGACCACCCGCATAGCTCGTCTGCCGCGCTATCTCTGTGTCCAATTC
ATGAGGTTTTTCTGGAAAGCGACCCCAGACAGTCAGGACCACGCCGGTGT
GAAATGCAAGTCTCTGCGGACCGTCACCTTCCCCGAGACCCTCGACATGT
TCGACTTCTGCAACAAGACACTCCAGGACCGGCTCATGATCACGCGCGGA
AGGGAAGTGGACGACATCCTGGGCAAGGATTCGAAGAAGAAGGGCGACGG
CCTTGGTGGAGATGGGGGCGACCCGGAGGCCAAAGGCGAGGAGAGCAGCG
GCAACGGCAGTTCTGAAGAAGAGGCCGCGTTGCAGGCGGCTCTGGCCATG
TCCATGGCGGATTCTGCAGATGCAGCTGTGCCTCCTGCTCCCTGTGGTCC
AGGTCTGCCAATGGATTTCAAGGGCTTGTACGAGCTCTTCGGCGTGGTGA
CGCACAAGGGTAGGACGGCCGACGGGGGGCACTACATGGGCTGGGTCCGT
CAGAAGGGGGACGACTGGCTGGTGTTTGACGACGAAGACGTGTCCGAGTG
CAAGACGGCGGAAGTCCTACAGCTTTCAGGGGGTGGGGATTGGCACATGG
CCTACCTCTGCTTCTATCGCTTCAAGGGCACAGGAGGGGTTGCAGACGAG
AAGGGGTCCTCTAGAGAGGGCAAGGAGTGAGCGGAGGGATGATGTACGGT
GAGACACTGGTCAGGCAGACGCGTGTAGCGGTCGCTTTCGTGAGAGGCGA
GGAGTGCGGCTCCGTAAGGAGAGGGTCATCGGTTCTCGAAAGCATATGTA
AAGAAGAAAGACCGAACATGCGCTCTTGATCTGCATAACTATCACAGGCG
TCGTGATGCGTGCTTTTCATAATTTCGGAATGAAACTTGTCGTGCGGCAT
TCAATTCTTAAGTTGTCTTCTACATACAAATGGTCATTGTTGTTCTTCAG
TTATTTGGAGTCCCGGGCTGGATGTTGGGG

protein sequence of rna5560

>rna5560-protein ID=rna5560-protein|Name=rna5560|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
MISRGLLAVGLLTASTSATVYFTENFDDKWESRWVVPSKWKAAEEIGEWA
HTAGEWFGDAADKGIKTSQDARFYGLSAKLAKPFSNEGKDLVLQYVVKHE
QRLDCGGAYIKLLGPELDQASFGGDTPYQIMFGPDVCGSTKRTHVIFNYP
EAKGEDKNLLIKTDVPTRTDQLSHLYTLHIMAANNSFNVLIDGESVREGS
LEESWDFRPPKTIPDPEQSKPADWVDEEMMADPADVKPEGYDDIPATLPD
SEAVQPEDWDEEEDGVWEAPMVDNPDYKGPWSPKMIPNPDYKGAWEHPHI
PNPEYSPDPKLHARATEVTAVGFELWQVKSGTMFDDIILTDSLDEATEYA
KETFWKKQEGEKAMFEKAEEERVEKEKAEREEMKKKAEENGEPFEEGDSP
FSVSDMEITEDEDEDDEDWEDEEEEDDENSFTMEL

mRNA from alignment at CM002466.1:288303..290532-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5560 ID=rna5560|Name=rna5560|organism=Nannochloropsis gaditana|type=mRNA|length=2230bp|location=Sequence derived from alignment at CM002466.1:288303..290532- (Nannochloropsis gaditana)
ATCACCCTGCTGTGACCTTTCTCTGCCGTTGGTGTCCTTGACACACGCCC
CTGATGGCAGCTCTTTTCTTTTTCGATCATGCCGTCTCGCCGATCGCTGT
CGAAGTCGAGGCTCTAGTTCTTTCTCTGACTTACGTGACTTCGTCGACAG
TACATTCGATGTTCTCCCTGCGAACACCGTGAGGCGAAGTCCGGGATCCT
CTGTGTCGTGCTACAAGTGTTCTTCAATAAACTGGCCACATACGTTTCCG
CGCTGCTCGGTCCAAAAGTCTGTGAAGCGTGCGCCCCCCCAAGGGACAGC
AACCATTTTTGAAATTACCATGCTCCTCTGCATTCGTTTTAATAGATCTT
GATCCACGCTAGCATTCAATGAAGAACCGATCAACAGCAATTGAATACCT
AGCCTTTATCCTGTCTTAAAGTGCGTCTGCCTGTGCCCGCGTTAAGTCGT
TCACGCCCTCTTTGTTGTCCTTTTACCCAAGGAGCCCTCATACTCCTCTT
TTCATCGAACCACTCGCACAGGCATCTTCTTTATCTGTTTTCCGGTTCGC
AAGCAAAAATGATTAGTCGTGGATTGCTTGCCGTAGGCCTACTGACAGCT
TCGACTTCTGCAACGGTGTATTTCACAGAGAATTTCGACGATAAATGGGA
GAGCCGGTGGGTGGTGCCCAGCAAGTGGAAGGCAGCTGAGGAGATTGGTG
AATGGGCCCACACTGCAGGAGAGTGGTTCGGAGACGCCGCGGACAAGGGC
ATCAAAACCTCCCAGGACGCCCGCTTCTACGGGCTGTCCGCCAAGCTGGC
CAAACCCTTCTCGAATGAAGGCAAGGACCTGGTCTTGCAGTACGTGGTGA
AGCACGAGCAGCGTTTGGACTGCGGAGGCGCCTACATTAAATTGCTGGGA
CCTGAGCTCGACCAGGCTTCCTTCGGGGGCGACACCCCTTACCAGATCAT
GTTTGGGCCCGACGTGTGCGGATCCACCAAGCGCACGCATGTGATTTTTA
ACTACCCCGAGGCGAAGGGCGAGGACAAGAACCTACTGATCAAGACGGAC
GTGCCCACCCGCACGGACCAACTCAGCCACCTGTACACCCTGCACATCAT
GGCTGCCAACAACTCCTTCAACGTCTTGATCGACGGTGAGTCCGTGCGTG
AGGGCTCCCTGGAGGAGTCCTGGGACTTCCGGCCCCCCAAGACCATCCCC
GACCCTGAGCAGAGCAAGCCGGCGGACTGGGTGGACGAGGAGATGATGGC
GGATCCCGCGGACGTCAAGCCGGAGGGGTACGACGACATCCCTGCCACCC
TGCCCGATTCGGAGGCCGTCCAGCCCGAGGACTGGGACGAGGAGGAGGAC
GGCGTCTGGGAGGCGCCCATGGTGGACAATCCCGACTACAAGGGCCCCTG
GTCCCCCAAGATGATCCCCAACCCGGACTACAAGGGCGCATGGGAACACC
CGCACATTCCTAACCCCGAATACTCGCCCGACCCCAAGCTGCACGCCCGT
GCCACGGAGGTGACGGCCGTCGGCTTCGAGCTTTGGCAGGTGAAATCGGG
CACCATGTTCGACGACATCATCCTGACAGATTCGCTGGATGAGGCCACCG
AATACGCCAAGGAGACCTTCTGGAAGAAGCAGGAGGGCGAGAAGGCCATG
TTTGAGAAGGCTGAAGAAGAACGAGTGGAGAAGGAGAAGGCGGAGCGTGA
GGAGATGAAGAAGAAGGCGGAAGAGAACGGGGAACCCTTCGAAGAGGGGG
ACAGCCCATTCTCTGTCTCCGACATGGAAATCACAGAGGACGAGGACGAG
GATGATGAGGACTGGGAGGATGAGGAGGAAGAGGATGACGAGAACTCCTT
TACCATGGAGCTCTAAGAGCGAAATGACTTTTCTCTCAGTGTAAACTCCT
GATTTTCTCGTGGTCGTCTTGTGGGAGGTAGCATCTCGAGGTTTGTCGCA
AATTATGAGTGTGCGCCTCCTTTATGAGGCATGAAAGCTGTTTTGTTACG
AAATGATGCGATGAGTGGCGCGCCGTAGACACCAGGAAAATGTGAGTTTT
CTGCTTAAAGCGAGAACCGATTGCATCAGCCATCACAAAGCCCGAGCGTG
GCTCCCTCCTCTCGCCTCGGAGGATGCCGGGGAAGAGGATTGCAGTCGTT
TTCAGGGTTATCAGGGCTTAATGTCAATCATAGAATTAAAATGAAACCCG
AAAAGCGCGTACATGTTTTTTGCTTGCATC

Coding sequence (CDS) from alignment at CM002466.1:288303..290532-

>rna5560 ID=rna5560|Name=rna5560|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at CM002466.1:288303..290532- (Nannochloropsis gaditana)
ATGATTAGTCGTGGATTGCTTGCCGTAGGCCTACTGACAGCTTCGACTTC
TGCAACGGTGTATTTCACAGAGAATTTCGACGATAAATGGGAGAGCCGGT
GGGTGGTGCCCAGCAAGTGGAAGGCAGCTGAGGAGATTGGTGAATGGGCC
CACACTGCAGGAGAGTGGTTCGGAGACGCCGCGGACAAGGGCATCAAAAC
CTCCCAGGACGCCCGCTTCTACGGGCTGTCCGCCAAGCTGGCCAAACCCT
TCTCGAATGAAGGCAAGGACCTGGTCTTGCAGTACGTGGTGAAGCACGAG
CAGCGTTTGGACTGCGGAGGCGCCTACATTAAATTGCTGGGACCTGAGCT
CGACCAGGCTTCCTTCGGGGGCGACACCCCTTACCAGATCATGTTTGGGC
CCGACGTGTGCGGATCCACCAAGCGCACGCATGTGATTTTTAACTACCCC
GAGGCGAAGGGCGAGGACAAGAACCTACTGATCAAGACGGACGTGCCCAC
CCGCACGGACCAACTCAGCCACCTGTACACCCTGCACATCATGGCTGCCA
ACAACTCCTTCAACGTCTTGATCGACGGTGAGTCCGTGCGTGAGGGCTCC
CTGGAGGAGTCCTGGGACTTCCGGCCCCCCAAGACCATCCCCGACCCTGA
GCAGAGCAAGCCGGCGGACTGGGTGGACGAGGAGATGATGGCGGATCCCG
CGGACGTCAAGCCGGAGGGGTACGACGACATCCCTGCCACCCTGCCCGAT
TCGGAGGCCGTCCAGCCCGAGGACTGGGACGAGGAGGAGGACGGCGTCTG
GGAGGCGCCCATGGTGGACAATCCCGACTACAAGGGCCCCTGGTCCCCCA
AGATGATCCCCAACCCGGACTACAAGGGCGCATGGGAACACCCGCACATT
CCTAACCCCGAATACTCGCCCGACCCCAAGCTGCACGCCCGTGCCACGGA
GGTGACGGCCGTCGGCTTCGAGCTTTGGCAGGTGAAATCGGGCACCATGT
TCGACGACATCATCCTGACAGATTCGCTGGATGAGGCCACCGAATACGCC
AAGGAGACCTTCTGGAAGAAGCAGGAGGGCGAGAAGGCCATGTTTGAGAA
GGCTGAAGAAGAACGAGTGGAGAAGGAGAAGGCGGAGCGTGAGGAGATGA
AGAAGAAGGCGGAAGAGAACGGGGAACCCTTCGAAGAGGGGGACAGCCCA
TTCTCTGTCTCCGACATGGAAATCACAGAGGACGAGGACGAGGATGATGA
GGACTGGGAGGATGAGGAGGAAGAGGATGACGAGAACTCCTTTACCATGG
AGCTCTAA

Synonyms

Publications