rna5555, rna5555 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5555
Unique Name	rna5555
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4584
Alignment location	CM002466.1:278233..278883 -

Link to JBrowse

Properties


Property Name	Value
Product	Peroxisome membrane anchor protein Pex14p
Orig transcript id	gnl\|cribi\|Naga_100016g53.2915.mrna
Orig protein id	gnl\|cribi\|Naga_100016g53.2915
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:278233..278883 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g53	gene5368	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25106.1	cds5541	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5555	rna5555-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:278233..278883-
coding sequence from alignment at CM002466.1:278233..278883-

mRNA sequence

>rna5555 ID=rna5555|Name=rna5555|organism=Nannochloropsis gaditana|type=mRNA|length=4584bp
ATGATGGGTAGGAAAGTGAACCGTGGCGAGATTCCGTCGGATGCAGCGAC
CAAGCTTCTGGTGGAGCTGGGCTGGGATTTCGACTGTGACCCAACGCATA
ACACCCAGCACCAGGTCTATCAAGCCACTATGCCGGACCTGCCATGGGAA
AGCCTCGGGCAAAGAAAACAACTGAACGCCTTCTTGAGCGACGCCATTGT
CAGGGGAAAGTTGGTTTGCACTCGCGATGAACTACGGGCGGAGGCTGCGC
GCTTAGCTTGTAAATCCTGTAAATCCCTCGTTGAAGATGCCATGGACCGC
TTTGTGGAGGCTAAGTCATCTTCTGTCTGCCCATCACTGAAGATGACGAA
GGCCGCGGGAGCCTTGGGTGACAGCTGCAGGAGTGGAGAGGGGGCCTTGG
ATACGAGCGAAGGGATCGTCAAGCCCCAGGAAACGGAGAGTCAAGACGAC
GAAGGTTCGTTACAAGCGATATCACAAGAGTTGGTGAATGTCGCAGACCT
TAGTTGGAAAATAGAGCCCGTGGGGGGGGGCATTAGCTCGTCCCAGCTGG
AGCAGCTCCAAGAGATCGTGAAAATGAGTGCTGCCACTCCTGAATCTCTC
TCCTTATCAGGCAGCGACCGCCTGGTAGCCTTGCTTGCCGAAGAGGGGGG
AAGTAGTAAGGACGGTCACGATATGGCAAAAATAATGGAGACCTTGTCCT
TTGCAGATGGCTCGGGGAAAAAAAAAAACAAAAAGAAGAAGAGGAAGAAA
GCCGTGTCTGTTGCTGCGCAACCGAGCGCCTCCGTGGGACGACTAATACC
CCATACATCGCCTGGAATCGTTGCAGACGATGGTGACGTAATGGGGCAAC
TGGAGGGTGGAGGCGGGGGCGGGGATGACGAGGTCATGCATTGCCTGGAA
CGAACGGGACAGGAGGCAGTATGGAGCGAGGGGACAAAGGGCAAGGAGGG
AAAGGTCGACGGCAACGGGAAGCGCCGAGAGGGGACCGAGGTTAGCAAAA
AGCTGCGGGAGAAAAATGATGCGGGCAATGGCAATGACCCAAAGCAGTCA
GGAAAGGAGCGCAGCACTGAGGGGGACACCAGCGAGCACGAGGGACAGGC
CGCGGCCCTGAGGCTATTGGGCGGGGAGCATGCTGGCCATGGAGCGGTGC
AGACAGCGGGAGAATGGCTGCGTGAAAAACTCGCCTCGCTCGTTCAGCAC
TATCGCGGGTTGATGGAAGCGGGCGCGGCAGCCGACAGGATGAGCGAGCT
TACCGCCTCCGAGAGACGCGGCGGACGGGATGCGGGTCTCAGCGCGGCTG
GGTCCGGCGCCTCCAACTCCTTCCTTGAGTATCAATTACAGCATCAAGCG
TACAAACTTCCGCAGCTGCTGCAGACGCAGGAGGCTCACCTTCGCCAGTG
GTTGCACACACTGACGGAACTGGTGCGTTCCCTGTTGCGCTTGGAGGCGT
GCCTGACCCTGGTTGCTGGCCAGAGCCGTGAGGTTCTCAGCCGCCTTATC
AAGTGCATTTATGCGCAGTACGAGAAATCTATAGAGGAGCTCATGCAGGT
ACACATCCAGGGCCGGAAAGCTATGCTGCGGGTGCTTCCAGCCACGCTCG
CTCAGGAATTTTTCATCATCCTGAATTATCCAGCACCGCCCGAGGCGCGG
CATATGTCCGCCCGACATCTTGAAGAGAAACGCCGAATTGTCCTGCGCCT
TCATGAGCTGGTGGCGCAGTATCTATTGCCGCAATCCACGGACGAGTCTC
CGCTTGCTGCTGGCCAAGGGCTGGCAAATTATGATGGCCGGCGGACTCGA
GCTCTCCTGGAGCGCTACATGCACCTGGGGCACGACCCGATGGGTTTCTT
CAAAGGTGACTTTTGGGATATAGTCGAGAAGAAAGAGGAAAAATGCTATA
ATTTGCGTGTGAGTTTGCTGGCTGGCACACAGCCTAAGTCCCATCGCACA
GAAATTTTGCAGGAGGCTCAAGAGCATGAGACCGCTCTCCGAGCCACGGT
CACGGAATGGGAAGGGAAGCTTCAGGATCTTTTCGAAGCTACTTCCGCTG
CTTTTGAAAAAGAGCTGGCGGTAAGCTGCTTTCCGCAGTCCCTTGAAATG
GCTGAAGCACTTCGTGGGCGCCAAAGGGCCTTCATTGCGGAGTGGGAGGC
CCATCGTGAGGGGTACAAGTTCCAAGTCACTCTCAGCCAAGAGCGCCTTC
AGGAGGTGTATGCCGCCAATCACGAAGAGAAACTCCGCCTCCGCCAGCGC
AATGAGGCCGCGTTGGTAGCGGAACACGAGAATAGCACGGATGCACGCAA
GCATCTTCCTGCCAAGGATACCGCCAAAGATACTAGGAGCGGTACGGACA
ATCCCCTACCGAACGGGGGCAAAGAGGGGCCTAACGATGGTGGAAAGGGC
GGCAAACCGGGCATAGAGGCTGTCACAGCTATGAACATGAACTCTCTATT
ACAACAAGCACAGTTGCAGCAACTTGAGCAGTGTCTGGCATTCCGCGTGG
TCGCAGTCAGGCACATGACACAGCGCCTGCGCCTGGTCCGCGGCCATCAA
GCCTTCTTAAAGACAAACTTGTCTCGGCGGGCTATTGTGACCCGCGCGCT
TTGCGGCCAATCGTCTGATGCTGCTACCAAAATGCGACTTCTTCTAGCGC
GGCTTCTCGTACAAAAGCTCGGCAGCGCGTATGGTGATTGGCAGGCGACG
TTGATGGAGCAAGAGCTCTCAGCTCAGGAAGAGAGAGATAAACAGCAGCA
GCTCTTAAAGAAAGGCGGTGGTGCTCACAGCATGACTATGGGGAAAAAAA
AGGGCTCTACGAGGGTAGGAACTCTCACCGGGAAGGCGGCTTTGGCAGTA
AATGGTAGAGCGAGCTCCCTCATGGGCAAGGAGGGACTAGCAGCGAGCTC
TTCGTCCGCAGGACCTGTGTTTACAGGCACGGAACCGACCGCGGAGAGCT
TTTGTTGCCTCGATCGCGGTGATTCCACCCAAGCTGGCCCCGACAGGATG
GAGGGTGCGGCTTCCTGCGTTTTCCTGTCCAGCAAGGAGGTAACAAAGCC
CAAAGGGAAGGGGGGTGCGGAGGGAGAGATGGGAAATGCAGCGCAAGCGT
CTTTCTTGTCGTCAGGCCGATCAAGCTTGAAGGAGTCGAGGCCCCTGCAG
TCTCCGTCATGGATTGACTCGCAAGGAAATTTCTTAACGTCGGCGCGCTC
ACTTGCTCACCACCAGAGCGAGGCCGCTGCCTCTGGCGAGTGCGATGGCC
TTGAGCTTGGGTGGATAAGGGTCTCCAGCAGGGAGGGGAGGCACCGCGCT
CTCACGAGGAAGGAAGAAAAGCGACACGAGCAACTACAGGAAGATGCAAC
ACTTGCTGCAGAAGAGGAGCATAAAGTACCCAAGTTAAGGCCCCGAGATC
AGAGAGAGGAAGAGCAGAGAAAAGAATCAGCCCAAGAGCGAGTAAAAGGG
CAGCACGGTGTGGAAGCTGGTCGTTTGAGTCTGCGAATTTATCGCGGCGA
GGGCAATGGCGCGCAGTCACAGTCAGCATCATCACCTTGGACAGCACATT
CTGACACGAATGCAGAGGTGGCACGCATAATCCCGTCGTCCTCGGCGCCA
CCGTCCCCGCCGTCAACGAATGAGGAGCGACCTCATGAGACGCGGGAGGA
CCCACTATCTTCCTCCAAGTTGGCCGCCACTTCTACGCACGCTACAAATC
TGGAATCTGTGGACAATTTCTCAAAAACCGCTTTTAAAGTCGATGTGCGC
GGCGGGAGTGGAGGAAACGGGAAGGCTCTGAAGGAGGATGATGTGGTTTG
CAAGGACGGAAATAGTTTGGGTGGAAGGGACCTGCAAAGAGCCACGGGAT
CTGATGCCTTTGACCCAGGTAAAGCGGTGGAAGGGAACGATGAGGAAGAT
GAGGATATAGGGGACGTGGAGATATTGTTTGGCGCTTTTGGAGGGGTCCA
AGAGACTCGGGGCGGGGAATGTGAGTCGTATAGTGAGGGATGCGAAGACT
TTCAAATAAGATCCGGGGGCCCTGAAGAGCAGCACATGTCCCCTATCGAC
GTCGAGACCCCTGTGAGGATGTCACACTCGCGGGGAAACACCCAGCCACC
GATGGACGACTTCTCGACCCAGCCCTCGCAACCACTGCTCCAGCTGCCGG
TCGCCGAACGGTCGCAGCATCACCTCATAGCACAACGTGGTCGGGACGTT
GAGATGGACGTGGCGCAAGACCAAAGCCATCGACGTCACCAGGACGACGT
GTCTTCATCGCCACATTTGGTAGCCTGTCCTCCGTCGCACCCGCAGACTC
ACGTTGGTGCTCAATGGCCCGCGGTACCCTCCTTTCATCAACCTCTACCG
GATGTGAATGGGAGCATCACAGCTCCTCTCGCGCGGCCAGAACTAGCGCA
TTCTGGTATTTATCCGACGCAATATTCGCACGCGATGGGGAAGGTGCACC
CACATATGGTAGAGGGGGGGGGGGCTGCCGCCCAATCATCCGCCCTATCA
AGGCTACTTTCCGTCCGCGCCCTCCCCTTACTTCGTCGATGTTCCGCCTC
CCAATACTCCTATTTTTGCAGTCTATTCCCATGA

protein sequence of rna5555

>rna5555-protein ID=rna5555-protein|Name=rna5555|organism=Nannochloropsis gaditana|type=polypeptide|length=216bp
MTARHTGSSEKKDLSRAVAFLTLERVQGTSDKLKTDFLLGKGFTTDEISD
AMLQARDVIEKRNKSAARVHSVGGNQTFGAAAPTPVSSIAHVLPEPNAKA
SSLVTLRGGALSFVALGSKPYDGNTSPSFIVENLLKDLERTLVAPVPADG
GQRDIARDKADVAVICLSVYGLQDCENDIHAILDKWVDPQAPPARFVVSA
PTEKRHAAQLLAIVRG

mRNA from alignment at CM002466.1:278233..278883-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5555 ID=rna5555|Name=rna5555|organism=Nannochloropsis gaditana|type=mRNA|length=651bp|location=Sequence derived from alignment at CM002466.1:278233..278883- (Nannochloropsis gaditana)
ATGACTGCAAGGCACACAGGAAGCAGTGAGAAGAAGGACCTATCCAGGGC
CGTGGCCTTCTTGACGCTGGAGCGGGTGCAGGGCACTTCAGACAAGCTGA
AGACAGATTTCCTCCTCGGCAAAGGTTTCACAACCGATGAGATATCCGAC
GCGATGCTTCAAGCTCGAGATGTCATCGAAAAACGTAATAAGTCGGCAGC
ACGGGTACACTCCGTAGGCGGAAATCAAACTTTTGGCGCAGCAGCACCGA
CGCCTGTGAGTAGTATTGCGCACGTCCTGCCCGAGCCCAATGCTAAAGCG
AGTTCACTTGTCACGCTGCGTGGCGGCGCTCTCTCCTTCGTCGCGTTAGG
AAGTAAACCCTACGACGGCAATACGAGTCCCAGTTTTATCGTGGAGAATT
TGCTGAAAGATTTAGAGAGGACTCTGGTTGCACCTGTCCCGGCAGACGGA
GGGCAGCGTGATATTGCACGAGATAAGGCAGATGTTGCGGTCATATGTCT
CTCAGTGTACGGTTTACAAGACTGCGAAAACGACATCCATGCAATACTGG
ACAAATGGGTAGATCCTCAGGCGCCACCAGCTAGGTTTGTCGTAAGTGCC
CCTACTGAGAAACGCCATGCGGCGCAGCTATTGGCAATCGTGAGAGGGTA
G

Coding sequence (CDS) from alignment at CM002466.1:278233..278883-

>rna5555 ID=rna5555|Name=rna5555|organism=Nannochloropsis gaditana|type=CDS|length=651bp|location=Sequence derived from alignment at CM002466.1:278233..278883- (Nannochloropsis gaditana)
ATGACTGCAAGGCACACAGGAAGCAGTGAGAAGAAGGACCTATCCAGGGC
CGTGGCCTTCTTGACGCTGGAGCGGGTGCAGGGCACTTCAGACAAGCTGA
AGACAGATTTCCTCCTCGGCAAAGGTTTCACAACCGATGAGATATCCGAC
GCGATGCTTCAAGCTCGAGATGTCATCGAAAAACGTAATAAGTCGGCAGC
ACGGGTACACTCCGTAGGCGGAAATCAAACTTTTGGCGCAGCAGCACCGA
CGCCTGTGAGTAGTATTGCGCACGTCCTGCCCGAGCCCAATGCTAAAGCG
AGTTCACTTGTCACGCTGCGTGGCGGCGCTCTCTCCTTCGTCGCGTTAGG
AAGTAAACCCTACGACGGCAATACGAGTCCCAGTTTTATCGTGGAGAATT
TGCTGAAAGATTTAGAGAGGACTCTGGTTGCACCTGTCCCGGCAGACGGA
GGGCAGCGTGATATTGCACGAGATAAGGCAGATGTTGCGGTCATATGTCT
CTCAGTGTACGGTTTACAAGACTGCGAAAACGACATCCATGCAATACTGG
ACAAATGGGTAGATCCTCAGGCGCCACCAGCTAGGTTTGTCGTAAGTGCC
CCTACTGAGAAACGCCATGCGGCGCAGCTATTGGCAATCGTGAGAGGGTA
G

Synonyms

Publications