EWM25106.1, cds5541 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25106.1
Unique Name	cds5541
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:278233..278883 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25106.1
Product	Peroxisome membrane anchor protein Pex14p
Orig transcript id	gnl\|cribi\|Naga_100016g53.2915.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:278233..278883 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR006785	Pex14_N

Homology

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BLAST of EWM25106.1 vs. NCBI_GenBank
Match: gi|585106744|gb|EWM25106.1| (Peroxisome membrane anchor protein Pex14p [Nannochloropsis gaditana])

HSP 1 Score: 440.269 bits (1131), Expect = 2.219e-156
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0

Query:    1 MTARHTGSSEKKDLSRAVAFLTLERVQGTSDKLKTDFLLGKGFTTDEISDAMLQARDVIEKRNKSAARVHSVGGNQTFGAAAPTPVSSIAHVLPEPNAKASSLVTLRGGALSFVALGSKPYDGNTSPSFIVENLLKDLERTLVAPVPADGGQRDIARDKADVAVICLSVYGLQDCENDIHAILDKWVDPQAPPARFVVSAPTEKRHAAQLLAIVRG 216
            MTARHTGSSEKKDLSRAVAFLTLERVQGTSDKLKTDFLLGKGFTTDEISDAMLQARDVIEKRNKSAARVHSVGGNQTFGAAAPTPVSSIAHVLPEPNAKASSLVTLRGGALSFVALGSKPYDGNTSPSFIVENLLKDLERTLVAPVPADGGQRDIARDKADVAVICLSVYGLQDCENDIHAILDKWVDPQAPPARFVVSAPTEKRHAAQLLAIVRG
Sbjct:    1 MTARHTGSSEKKDLSRAVAFLTLERVQGTSDKLKTDFLLGKGFTTDEISDAMLQARDVIEKRNKSAARVHSVGGNQTFGAAAPTPVSSIAHVLPEPNAKASSLVTLRGGALSFVALGSKPYDGNTSPSFIVENLLKDLERTLVAPVPADGGQRDIARDKADVAVICLSVYGLQDCENDIHAILDKWVDPQAPPARFVVSAPTEKRHAAQLLAIVRG 216

The following BLAST results are available for this feature:

BLAST of EWM25106.1 vs. NCBI_GenBank

BLAST of EWM25106.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106744\|gb\|EWM25106.1\|	2.219e-156	100.00	Peroxisome membrane anchor protein Pex14p [Nannoch...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5555	rna5555	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications