rna5553, rna5553 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5553
Unique Name	rna5553
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3144
Alignment location	CM002466.1:270656..272569 -

Link to JBrowse

Properties


Property Name	Value
Product	inactive ubiquitin carboxyl-terminal hydrolase 54
Orig transcript id	gnl\|cribi\|Naga_100016g55.2898.mrna
Orig protein id	gnl\|cribi\|Naga_100016g55.2898
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:270656..272569 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g55	gene5366	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25089.1	cds5539	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5553	rna5553-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:270656..272569-
coding sequence from alignment at CM002466.1:270656..272569-

mRNA sequence

>rna5553 ID=rna5553|Name=rna5553|organism=Nannochloropsis gaditana|type=mRNA|length=3144bp
CGGCCTCTCTGCAGGCATGCCACACGGTATTGCTCGGATATTGTTTACAC
ACGAAATATGACTCAAACATGTGTGGAGTGTCCCGCCCTCCTGCTAGTTT
CCGATTGTGCCAGTGTTGGTATGTGCGGGGGGTGAATTGTCATCATTCGA
CTTCTTACAGAAAATCTGTACGACGGTTGTGATTTTTTTTACGTCGTTGA
TTTGGCATCCCTCAGTGTTCCTTGCGGTGCCAAAACCGACTCCTCTCTCA
ACACGGCGAGGTCTTGAATACTATGTCAAATCCGGACCACCCACAAACTT
TATGGATGAAAACTTGACATCGTCCCATCCAAACAATCCAGGAACGTGGT
CTGTCAAAGTGGAGAGTTGTATAGAGAGGAGAGGGGAGGGGCCTCTTGCC
TCTGGTGCTAGCTATCTCCTTTGGTTCAATCAGGCGGGCCGGCGGTCGTC
ATGAACCCGGGCAGAGGGGTCAATGATGCGTCCACATACAACAAGGCACG
TTTATGTAATGGATCGGAAGGGGTGACAGCGTTGGAGTTTCTGACAGTGC
CAAATGTGGCCAAGACACCAATTTCATCGCGCATCGCTTTCCTGAAAAGC
AAGGGCTTTACCGAAACGGAAATTAGCGTTGCTCTACGTTTGGCTGGGGA
GGTGATGTGTAGCGGGCACAACACATCGTCACCAGCGACAAGACAGCCAG
CTTGTGTCGACCGAAGTATCGTGGACGTAAAGAGCGAGGCATGGGGCCCA
GTCGCCCGGGGTCATGCTTGGAATTCCTCTTTCTCCTCCGCGTCCGCCCG
CAGAACATTTCAAAGTCACTTTGGGGACTCTGCTACGACACGCGTAGGAT
TCTCAGACCGGCAGGCACATGCTCATCATCAGAACGGGATCTTTTCTGGA
AGCGCGTTCCCTCCATCACAAGCGCCTCGAGGTGGCTTGAGAGGATGTGG
CCAGGACGTAGGAGAGGTCTCGGACATGATGGCGGCGATCAATGTAGCAA
AGAGTTCTATGCAAGGCGGTGCATTTTTTCGTGCGAAATCGCGAGGTGCA
TCACACGGGCTGTCAGAGCACTACATGCCACCGAGGCATGCGCAGGGGCG
GCTGCCGACAGCGTCGTCTTCCTCTTTCTCGAGTCGGTGGTCACACACTA
CGCCTGGGGGTTTGCAGCAAGGAGACCCACCGTATCGACTAATTGAAGCA
ACTGAATCTACGGAAGATGCACAAGGCGCGGGCTTGGCGCCTCCTCAACG
CCTCTTCCAGTCCCGACCTGACGCAACCTTCTCCACCGGCGTCCCTCCAG
GCCCCAGTCAGAACTCCCGTAACCCCTTTCACCAAGACCAAAGCCCCCCG
CTTTTTGACATAACGCACCAAAAGCAATTGCACGAGCATCGGCCTCCTAC
ATGCGCAATGCCGCTGGCCGAAATGCGAGGGCTCAAGCATGACGATAGCG
CGCGGTCGGGCATACAGTCTCAGGACTACCTTCAGGCGCCTGCTCATAAC
CATAATTACCAGTACTACTCATCGACATCGAATTTCAGACCCCCAAACAT
CGCGCACTGCGGCGCTGGGGACATACCAGTGACTGAATCGGGCTATCCGG
GGTATGCCCGTCACTTCGAAGCACGACGATATCATAAAACTTCCAGCGGT
GGGCATGCGGAGGTCCCGCGAGGCTCCGAGGGCGGCGTGATGTGGAGAGT
GCGGGGACACAGCTTCGCCGACGGTGTGGACTGTGATTTCCCTCCGAGCA
GCAGTGGTCGAGCGGATGTGCAATGGCAGGAGCAGCATGGAAAAGACAAA
AGAGAGTCGTCAAACCACCCTACCCCAGACACGTCTACGCACAATACGAT
CACAAGTCAGGGCAGTGACGATGCACTACCGTGGTTCAAAACCATCGCAA
GCGGGCGTGTTCAGAAACACTTAATGCGTTTCGTGAACAACTTTATCTCG
CAGCAAGATCTTGAAGACGAGCTCGGCCTGTACATGGCGGACATCTTCTA
CGAGACAGAGACCGGCCCCACAATGATGGCGCTTTACGACAAGCTGGAAC
GTCGCGTGAGCGAGCGCTGTCCAGGTCATTTGACAACATTCCGGGAAGAG
GCTTTGCAAAGCTTACATCAGCTCATGCAAGCCTGCGAGGAGCGGGAGGA
GCAGCAGGAGCAGGGCCGTAAGGCTCTCAAGTCATCCGGGCAACGTGGTA
AGCCCGTCCGCAACGCAGCTAAGCGACTGGGGAAATCTCGGACAGAGGGC
CGCAAACTGGGCGCCATGATCGCGCATTATCGATCGCAGTGCCCCGTGGG
CAATACTGGATACGCTACCGGCAAAGACGATGCAAAGGATGTAAGCGATT
TCGCCCAGTATGGACCAGGAGGCTTGTGCCAGGAGAACTTACAGCCTCAA
TTAAGGAAAGCTGATACTCTGAAGAAATAAGCGACAGCTTATGAAAGAAA
CGGTCGAGAAGTATCTGGGAAGATGGTGCACATTGAGACGTGTGCAATTA
AAGAAGTGCCCTTCGGGAAGTGGAGGATGAAATGAAAAGTGGTAGAATTC
GACCAAGCTTTGTTGGACGGAAAGGCAAAAGGATGCCCCATTGCATATTC
ATGTGTAGCACTCCTGCTGATGCGTATGCCTCGACGTGAATTAAAATCGC
AAGCAGACAGACTGCTCCTTAGGGAACAGCAAGGTAGAGCATTGTCCGAC
TGAATTTATATTGCAGTCTTCTTGTACACTTCACAAGGCTTATTTTGGGG
ACTACCCTGAACTCACTCGGTGGCGGAAAAAAGAAACTGTAGGTACTGGA
AATCGCGGCAGACCTTGCAAGAAGCCCACGACGTGTCAGTCACCTATGAC
GCATTTTGCGACCACCATTACATTTCCCGCTTATATTGATCCAAGCGCAT
TGAGATGGTATCACTTTATGCAGTGCAGCTATGTTGTTCATCCCTTCTCC
GGTCGACAGAAAGCATATAAAAAATTTCGGAGGCTCATGTACAATAATGT
CTGAAATCTGTTTCTAGTCTCCAAAGGATTTAAGGACGACAACCACAATC
TTTAAAGCAAATTTCTGGCCGTGGTGAACATTCACAAGCAAGCAGCACCC
GTCAAAGTAACAAATCAAAGCACAAAGATATAGTATCACAGTAT

protein sequence of rna5553

>rna5553-protein ID=rna5553-protein|Name=rna5553|organism=Nannochloropsis gaditana|type=polypeptide|length=637bp
MGDNHLTSTQEQYGPPHQGRQHHYSRYAEQGCSLYRQGFFDGSSPHPSRL
RHYQGGGPPSAVHPAYSLPVHHAIDVQQRPLPFAFPRVVRNSPCRGNPVF
TAAPPYSAISCEEGRLPGGPRALLRGATEAGWRRGRVSRGRGDEEGGRGH
ARGRATYSTAGRNARCQGLPPSGEGETSSSNKQDGCQHSYPVPISGVGAQ
AEEDTEIARQLVVERVEGSHEAGIATGAHLSHPPKQESRVKLPSDRIKSP
SNRSQAGSRVLVGGGLANRMGQNHCYLNVVVQSLWSIRAFRNRVCRDTDT
SMLVKSNETAHMCKLHEALRAVMEGLSDQEANIASHERGEDTTIPPPVVS
VDKLRQVLSEMVRQKSNPTPACGSEIYVHDGKFRAGHMDDAVEAFEEILR
LLGTGGEEGRLVVRDSFCLHLRELMFCPTCGSSSPSPARDYDTNVFYVPV
RSLIEEAARRASSKSNSISISESVGLDFGSLLQDAGSGDLYRCRNTEACP
IARRGEKRAGHRYLVRGPPSVFSLGLVWDSLKADPRDTQALIDLLSSTIC
LKHFKLPVEHQGDDDVEQQGEMIGVLRGFFAFHPQKHHYVSFLLYDGTGW
VCVDDGRAYALGPHLSDALKECTEQQYQPSLLFYEAN

mRNA from alignment at CM002466.1:270656..272569-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5553 ID=rna5553|Name=rna5553|organism=Nannochloropsis gaditana|type=mRNA|length=1914bp|location=Sequence derived from alignment at CM002466.1:270656..272569- (Nannochloropsis gaditana)
ATGGGGGACAACCATTTGACGTCGACGCAAGAGCAGTACGGCCCACCGCA
CCAAGGGCGACAGCACCATTATAGTCGGTACGCTGAGCAAGGATGCTCGC
TGTACCGCCAAGGCTTCTTTGATGGGTCCTCTCCACACCCCAGCCGCCTC
CGTCATTATCAGGGCGGCGGGCCTCCCTCTGCCGTCCACCCGGCCTATTC
GCTGCCCGTGCACCACGCGATCGACGTACAGCAGCGACCACTTCCCTTTG
CGTTTCCACGAGTCGTTCGTAATTCTCCTTGTCGGGGCAATCCCGTTTTC
ACAGCCGCACCGCCTTATTCGGCAATTTCATGTGAGGAAGGTCGGCTGCC
AGGAGGGCCCCGCGCGCTCCTCCGCGGGGCAACGGAGGCGGGGTGGAGAA
GAGGGAGAGTGTCCAGAGGAAGAGGAGACGAGGAAGGAGGCCGGGGACAT
GCACGGGGCCGCGCCACTTACTCGACTGCCGGTCGCAATGCCCGATGTCA
GGGTTTGCCACCTTCCGGTGAGGGAGAAACGAGTTCGAGCAACAAGCAAG
ACGGGTGCCAACATAGTTATCCCGTGCCCATTAGTGGTGTGGGAGCACAG
GCTGAAGAAGACACCGAAATAGCGCGCCAGTTGGTCGTAGAAAGAGTGGA
GGGGTCACATGAAGCTGGCATAGCCACGGGCGCCCATCTATCCCACCCTC
CGAAGCAGGAGTCTCGAGTCAAGCTTCCATCGGACCGCATAAAATCGCCC
TCCAACCGATCGCAGGCGGGCAGCAGGGTGTTGGTTGGCGGAGGGCTCGC
AAATAGGATGGGTCAGAACCACTGCTACCTAAATGTGGTCGTTCAAAGCC
TCTGGAGCATTCGCGCATTCAGGAACCGCGTTTGTCGCGACACAGACACC
TCGATGCTGGTCAAATCGAATGAAACTGCACACATGTGCAAATTGCATGA
AGCCTTACGAGCAGTTATGGAGGGGCTCTCCGACCAAGAAGCTAATATAG
CAAGCCATGAAAGGGGAGAAGATACCACAATACCCCCCCCGGTGGTATCC
GTTGATAAATTGCGACAAGTCCTGAGCGAGATGGTAAGGCAGAAATCAAA
TCCAACTCCTGCCTGTGGAAGTGAGATATACGTTCACGACGGAAAATTTC
GCGCTGGGCATATGGACGACGCAGTGGAAGCCTTTGAGGAAATACTGCGC
CTGCTGGGTACAGGAGGCGAGGAAGGCCGTCTCGTGGTGCGGGATTCCTT
TTGTCTTCATTTGCGGGAACTCATGTTTTGTCCCACCTGTGGTAGCTCTT
CTCCAAGCCCCGCTCGGGATTATGACACCAACGTCTTTTACGTCCCTGTG
CGGTCTTTGATCGAAGAAGCCGCTCGACGGGCATCAAGCAAATCAAATTC
AATTTCGATCTCAGAATCTGTCGGCCTAGATTTTGGTTCATTGCTGCAGG
ACGCTGGGTCCGGGGACTTGTACCGATGCAGGAACACCGAAGCGTGCCCT
ATTGCGCGGCGAGGAGAGAAGCGCGCCGGTCATCGATATTTGGTGCGAGG
GCCCCCTTCAGTGTTTTCGCTGGGGCTCGTGTGGGACAGCTTGAAGGCAG
ATCCAAGGGACACTCAGGCGCTCATCGATTTATTATCCTCAACAATATGC
CTCAAACATTTCAAGTTGCCCGTAGAACATCAAGGGGACGACGACGTTGA
GCAGCAGGGGGAAATGATAGGCGTTCTCCGCGGCTTTTTCGCGTTCCATC
CTCAAAAGCATCATTACGTATCCTTTCTTCTCTATGACGGGACGGGCTGG
GTCTGCGTAGACGACGGAAGGGCATATGCCCTGGGACCTCACTTAAGTGA
TGCCTTAAAGGAGTGCACAGAGCAGCAGTACCAACCAAGTCTACTTTTTT
ACGAAGCAAATTAG

Coding sequence (CDS) from alignment at CM002466.1:270656..272569-

>rna5553 ID=rna5553|Name=rna5553|organism=Nannochloropsis gaditana|type=CDS|length=1914bp|location=Sequence derived from alignment at CM002466.1:270656..272569- (Nannochloropsis gaditana)
ATGGGGGACAACCATTTGACGTCGACGCAAGAGCAGTACGGCCCACCGCA
CCAAGGGCGACAGCACCATTATAGTCGGTACGCTGAGCAAGGATGCTCGC
TGTACCGCCAAGGCTTCTTTGATGGGTCCTCTCCACACCCCAGCCGCCTC
CGTCATTATCAGGGCGGCGGGCCTCCCTCTGCCGTCCACCCGGCCTATTC
GCTGCCCGTGCACCACGCGATCGACGTACAGCAGCGACCACTTCCCTTTG
CGTTTCCACGAGTCGTTCGTAATTCTCCTTGTCGGGGCAATCCCGTTTTC
ACAGCCGCACCGCCTTATTCGGCAATTTCATGTGAGGAAGGTCGGCTGCC
AGGAGGGCCCCGCGCGCTCCTCCGCGGGGCAACGGAGGCGGGGTGGAGAA
GAGGGAGAGTGTCCAGAGGAAGAGGAGACGAGGAAGGAGGCCGGGGACAT
GCACGGGGCCGCGCCACTTACTCGACTGCCGGTCGCAATGCCCGATGTCA
GGGTTTGCCACCTTCCGGTGAGGGAGAAACGAGTTCGAGCAACAAGCAAG
ACGGGTGCCAACATAGTTATCCCGTGCCCATTAGTGGTGTGGGAGCACAG
GCTGAAGAAGACACCGAAATAGCGCGCCAGTTGGTCGTAGAAAGAGTGGA
GGGGTCACATGAAGCTGGCATAGCCACGGGCGCCCATCTATCCCACCCTC
CGAAGCAGGAGTCTCGAGTCAAGCTTCCATCGGACCGCATAAAATCGCCC
TCCAACCGATCGCAGGCGGGCAGCAGGGTGTTGGTTGGCGGAGGGCTCGC
AAATAGGATGGGTCAGAACCACTGCTACCTAAATGTGGTCGTTCAAAGCC
TCTGGAGCATTCGCGCATTCAGGAACCGCGTTTGTCGCGACACAGACACC
TCGATGCTGGTCAAATCGAATGAAACTGCACACATGTGCAAATTGCATGA
AGCCTTACGAGCAGTTATGGAGGGGCTCTCCGACCAAGAAGCTAATATAG
CAAGCCATGAAAGGGGAGAAGATACCACAATACCCCCCCCGGTGGTATCC
GTTGATAAATTGCGACAAGTCCTGAGCGAGATGGTAAGGCAGAAATCAAA
TCCAACTCCTGCCTGTGGAAGTGAGATATACGTTCACGACGGAAAATTTC
GCGCTGGGCATATGGACGACGCAGTGGAAGCCTTTGAGGAAATACTGCGC
CTGCTGGGTACAGGAGGCGAGGAAGGCCGTCTCGTGGTGCGGGATTCCTT
TTGTCTTCATTTGCGGGAACTCATGTTTTGTCCCACCTGTGGTAGCTCTT
CTCCAAGCCCCGCTCGGGATTATGACACCAACGTCTTTTACGTCCCTGTG
CGGTCTTTGATCGAAGAAGCCGCTCGACGGGCATCAAGCAAATCAAATTC
AATTTCGATCTCAGAATCTGTCGGCCTAGATTTTGGTTCATTGCTGCAGG
ACGCTGGGTCCGGGGACTTGTACCGATGCAGGAACACCGAAGCGTGCCCT
ATTGCGCGGCGAGGAGAGAAGCGCGCCGGTCATCGATATTTGGTGCGAGG
GCCCCCTTCAGTGTTTTCGCTGGGGCTCGTGTGGGACAGCTTGAAGGCAG
ATCCAAGGGACACTCAGGCGCTCATCGATTTATTATCCTCAACAATATGC
CTCAAACATTTCAAGTTGCCCGTAGAACATCAAGGGGACGACGACGTTGA
GCAGCAGGGGGAAATGATAGGCGTTCTCCGCGGCTTTTTCGCGTTCCATC
CTCAAAAGCATCATTACGTATCCTTTCTTCTCTATGACGGGACGGGCTGG
GTCTGCGTAGACGACGGAAGGGCATATGCCCTGGGACCTCACTTAAGTGA
TGCCTTAAAGGAGTGCACAGAGCAGCAGTACCAACCAAGTCTACTTTTTT
ACGAAGCAAATTAG

Synonyms

Publications