|
|
Properties
| Property Name | Value |
|---|
| Product | Peroxisome membrane anchor protein Pex14p |
| Orig transcript id | gnl|cribi|Naga_100016g57.2923.mrna |
| Orig protein id | gnl|cribi|Naga_100016g57.2923 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:267132..270393 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5552 ID=rna5552|Name=rna5552|organism=Nannochloropsis gaditana|type=mRNA|length=1890bp
ATGGCATTACGTCGTCGAAATGGTGTCAGACAAACTTCAGAGGAATTGAG
CTCTGAGATTTTCACAGAACGCGTCTTGACCGTCTACAGTCAGCAGGCTC
AGCGCATCCAAGAATCCTTTAATCTCGCCATGGAAAGTAACAATAAGGCG
TTTGATAATGCTCTTAAAACAATAATTGCGGTCCTTGGACGTAATCATCC
CTCTCAATGCGTGGAAGCGGTTGATGAAAGCTCAGGCCGTCAGCACGTCG
GTCCTAGCCTTGAAAGCGGAGACAGCGGGACTCGCCGCAATCGACCTGCT
GCTCGACTCTCGAGGACCTCGCGGCGAGTTCGTGCTAGTCCCTTCCACAT
AAAAGATAATGCGGAGCCGATGGGGGTCAGAGGTATTTTCGTCAACGATA
ACATGGAGGTTGAAGAGCAGCAAGGTGGCCCATACGCCAGCAGCGCTCGA
AGGCGATCCTCCTACCCCACCCGGCTCAGGACGAGGATGGCCCCTCTTAG
GGGGGCGGGTGGTGAGGCGGAGGACAAAGCGCTCAAATCTGCCGATGCTG
CACAGCTTGAAGGTTCAGATGTAGGGATTCGTGGTCTGAGTCCGGTCAGG
GTCACGAGAAGGGGGAGCACGCTCGGCAGGCCCCCACAGCGGTCGGCAGA
CGGGCGCCAGCACGCCGAAGCCGTCCTCCCTGTGAGCAAGAAACGGTCCC
GGCTCGGCCACCACTCTGTCCCGTCTCGCGACACGGAAGCTGGACTCGGA
GAATATGAGGAGTTGGGCGACGTGAGTGGCGTGGACGGGGAAAAAGGACA
TCCGACGAAAGGGGAAGGGTCCAGCCCGGCCTTGCCCGCGCCCTCTCGCT
GGGAGGTGACGGCCGCGGTCCAGGCTTTTTTACGGGGCTTCGAGCGGTAT
TTGTCATTGGAGCATGTTTCATCCCACACGGGGCAGCCCTTGGCGCCGCT
GACAGTGAGCAACCGCGTCAGCCAGGCTCATCGCCTGCTTTTCAGGGCTG
GGCTGGAGGAGCCCACGGAGGAGGGTCTCGAGAGGCTGCGGGTGGACGTG
GGGCCGGATCGGAACGCCTACAACCTGGCGGGCGACATGCTCGGGTTTCT
GCAGCACATGCTGCGCGCCCTGGGCTGCCAGGTTTCCGACCTGGGGGGAG
CGGAGGAATTGAGGCGTTACGTGTTGACTCACAAGCGCGAGATGGAGGCA
CTAGTCCCACCGAACCGCGTGCCCTACCCGCGGGAGAGGGCGGCGTGGAA
GAAGGTGTGGGAGTGGGCGAGTGGAAAGCGAATCTGGGAGGGGGAGGCGG
GGCACCATCGGCTCGGCCTGGGCGCCTCCTCTTCTTCCGCGGGCAGTTTT
CGCCAGCAGGCGCGGGCGCTGGTGTCGGACAAGGCAGAGAGTATGGAAAC
CCATTCGTTCGAAGGAGAAGCAAATCGTGGTCTTGGCGGGGGGCAAGAGG
AGGGAGATGTCTCCGACGAGGAAGCGGGGATGGGGGAAGGTGAGGAAGAA
GCGGAGGAAGAGGATAAGGTCTTGAAGGATGTGATCAAGTGGATGGGGGA
AAATAACACCAAGAAAAGAAGGAAAGAGAGTGAGGGAATACTGGACAAGC
GAGTAGAGGACGCGGTAGAGGAAACGGGGGGAACGGGGGCGGTGGAGGAG
GAAAAGAGAGGAGAAAATGAAGAGACAAGGGAGGAGAACCAAGGCCTGAG
AAGAAGAACGGATGCGCCGAAGCAAGCGCGCACGAACGCCCTATGTTTTG
ACGACAGCAACGGGCTAATCCGTAGAGATGGCGAAGGGGAGGGCGTTAAG
GCCTCTGATTGGGGGATTCCGAGGCACAGACTGCTGAGGGAAGAGAGGGA
CTCCAGCAAAGATTGCCTTGATGCTCGCGCCAGCCTGTGA back to topprotein sequence of rna5552 >rna5552-protein ID=rna5552-protein|Name=rna5552|organism=Nannochloropsis gaditana|type=polypeptide|length=659bp
MNPGRGVNDASTYNKARLCNGSEGVTALEFLTVPNVAKTPISSRIAFLKS
KGFTETEISVALRLAGEVMCSGHNTSSPATRQPACVDRSIVDVKSEAWGP
VARGHAWNSSFSSASARRTFQSHFGDSATTRVGFSDRQAHAHHQNGIFSG
SAFPPSQAPRGGLRGCGQDVGEVSDMMAAINVAKSSMQGGAFFRAKSRGA
SHGLSEHYMPPRHAQGRLPTASSSSFSSRWSHTTPGGLQQGDPPYRLIEA
TESTEDAQGAGLAPPQRLFQSRPDATFSTGVPPGPSQNSRNPFHQDQSPP
LFDITHQKQLHEHRPPTCAMPLAEMRGLKHDDSARSGIQSQDYLQAPAHN
HNYQYYSSTSNFRPPNIAHCGAGDIPVTESGYPGYARHFEARRYHKTSSG
GHAEVPRGSEGGVMWRVRGHSFADGVDCDFPPSSSGRADVQWQEQHGKDK
RESSNHPTPDTSTHNTITSQGSDDALPWFKTIASGRVQKHLMRFVNNFIS
QQDLEDELGLYMADIFYETETGPTMMALYDKLERRVSERCPGHLTTFREE
ALQSLHQLMQACEEREEQQEQGRKALKSSGQRGKPVRNAAKRLGKSRTEG
RKLGAMIAHYRSQCPVGNTGYATGKDDAKDVSDFAQYGPGGLCQENLQPQ
LRKADTLKK back to topmRNA from alignment at CM002466.1:267132..270393+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5552 ID=rna5552|Name=rna5552|organism=Nannochloropsis gaditana|type=mRNA|length=3262bp|location=Sequence derived from alignment at CM002466.1:267132..270393+ (Nannochloropsis gaditana)
CGGCCTCTCTGCAGGCATGCCACACGGTATTGCTCGGATATTGTTTACAC
ACGAAATATGACTCAAACATGTGTGGAgtgtcccgccctcctgctaGTTT
CCGATTGTGCCAGTGTTGGTATGTGCGGGGGGTGAATTGTCATCATTCGA
CTTCTTACAGAAAATCTGTACGACGGTTGTGATTTTTTTTACGTCGTTGA
TTTGGCATCCCTCAGTGTTCCTTGCGGTGCCAAAACCGACTCCTCTCTCA
ACACGGCGAGGTCTTGAATACTATGTCAAATCCGGACCACCCACAAACTT
TATGGATGAAAACTTGACATCGTCCCATCCAAACAATCCAGGAACGTGGT
CTGTCAAAGTGGAGAGTTGTAtagagaggagaggggaggggcctcTTGCC
TCTGGTGCTAGCTATCTCCTTTGGTTCAATCAGGCGGGCCGGCGGTCGTC
ATGAACCCGGGCAGAGGGGTCAATGATGCGTCCACATACAACAAGGCACG
TTTATGTAATGGATCGGAAGGGGTGACAGCGTTGGAGTTTCTGACAGTGC
CAAATGTGGCCAAGACACCAATTTCATCGCGCATCGCTTTCCTGAAAAGC
AAGGGCTTTACCGAAACGGAAATTAGCGTTGCTCTACGTTTGGCTGGGGA
GGTGATGTGTAGCGGGCACAACACATCGTCACCAGCGACAAGACAGCCAG
CTTGTGTCGACCGAAGTATCGTGGACGTAAAGAGCGAGGCATGGGGCCCA
GTCGCCCGGGGTCATGCTTGgaattcctctttctcctccgcgtccgccCG
CAGAACATTTCAAAGTCACTTTGGGGACTCTGCTACGACACGCGTAGGAT
TCTCAGACCGGCAGGCACATGCTCATCATCAGAACGGGATCTTTTCTGGA
AGCGCGTTCCCTCCATCACAAGCGCCTCGAGGTGGCTTGAGAGGATGTGG
CCAGGACGTAGGAGAGGTCTCGGACATGATGGCGGCGATCAATGTAGCAA
AGAGTTCTATGCAAGGCGGTGCATTTTTTCGTGCGAAATCGCGAGGTGCA
TCACACGGGCTGTCAGAGCACTACATGCCACCGAGGCATGCGCAGGGGCG
GCTGCCGAcagcgtcgtcttcctctttctcgagTCGGTGGTCACACACTA
CGCCTGGGGGTTTGCAGCAAGGAGACCCACCGTATCGACTAATTGAAGCA
ACTGAATCTACGGAAGATGCACAAGGCGCGGGCTTGGCGCCTCCTCAACG
CCTCTTCCAGTCCCGACCTGACGCAACCTTCTCCACCGGcgtccctccag
gccccaGTCAGAACTCCCGTAACCCCTTTCACCAAGACCAAAGCCCCCCG
CTTTTTGACATAACGCACCAAAAGCAATTGCACGAGCATCGGCCTCCTAC
ATGCGCAATGCCGCTGGCCGAAATGCGAGGGCTCAAGCATGACGATAGCG
CGCGGTCGGGCATACAGTCTCAGGACTACCTTCAGGCGCCTGCTCATAAC
CATAATTACCAGTACTACTCATCGACATCGAATTTCAGACCCCCAAACAT
CGCGCACTGCGGCGCTGGGGACATACCAGTGACTGAATCGGGCTATCCGG
GGGTAAGTAAATTTTGGCATGCAAAAGGAAGAACGTGAAAAAAAAATAGG
GCCCGTGCGTGAGGACCTGATCTCTTCCAATGTACTCACAACGATAAGCT
TCATTGCGATCCAATCACAGTATGCCCGTCACTTCGAAGCACGACGATAT
CATAAAACTTCCAGCGGTGGGCATGCGGAGGTCCCGCGAGGCTCCGAGGG
CGGCGTGATGTGGAGAGTGCGGGGACACAGCTTCGCCGACGGTGTGGACT
GTGATTTCCCTCCGAGCAGCAGTGGTCGAGCGGATGTGCAATGGCAGGAG
CAGCATGGAAAAGACAAAAGAGAGTCGTCAAACCACCCTACCCCAGACAC
GTCTACGCACAATACGATCACAAGTCAGGGCAGTGACGATGCACTACCGT
GGTTCAAAACCATCGCAAGCGGGCGTGTTCAGAAACACTTAATGCGTTTC
GTGAACAACTTTATCTCGCAGCAAGATCTTGAAGACGAGCTCGGCCTGTA
CATGGCGGACATCTTCTACGAGACAGAGACCGGCCCCACAATGATGGCGC
TTTACGACAAGCTGGAACGTCGCGTGAGCGAGCGCTGTCCAGGTCATTTG
ACAACATTCCGGGAAGAGGCTTTGCAAAGCTTACATCAGCTCATGCAAGC
CTgcgaggagcgggaggagcagcaggagcagggccGTAAGGCTCTCAAGT
CATCCGGGCAACGTGGTAAGCCCGTCCGCAACGCAGCTAAGCGACTGGGG
AAATCTCGGACAGAGGGCCGCAAACTGGGCGCCATGATCGCGCATTATCG
ATCGCAGTGCCCCGTGGGCAATACTGGATACGCTACCGGCAAAGACGATG
CAAAGGATGTAAGCGATTTCGCCCAGTATGGACCAGGAGGCTTGTGCCAG
GAGAACTTACAGCCTCAATTAAGGAAAGCTGATACTCTGAAGAAATAAGC
GACAGCTTATGAAAGAAACGGTCGAGAAGTATCTGGGAAGATGGTGCACA
TTGAGACGTGTGCAATTAAAGAAGTGCCCTTcgggaagtggaggatgaAA
TGAAAAGTGGTAGAATTCGACCAAGCTTTGTTGGACGGAAAGGCAAAAGG
ATGCCCCATTGCATATTCATGTGTAGCACTCCTGCTGATGCGTATGCCTC
GACGTGAATTAAAATCGCAAGCAGACAGACTGCTCCTTAGGGAACAGCAA
GGTAGAGCATTGTCCGACTGAATTTATATTGCAGTCTTCTTGTACACTTC
ACAAGGCTTATTTTGGGGACTACCCTGAACTCACTCGGTGGCGGAAAAAA
GAAACTGTAGGTACTGGAAATCGCGGCAGACCTTGCAAGAAGCCCACGAC
GTGTCAGTCACCTATGACGCATTTTGCGACCACCATTACATTTCCCGCTT
ATATTGATCCAAGCGCATTGAGATGGTATCACTTTATGCAGTGCAGCTAT
GTTGTTCATCCCTTCTCCGGTCGACAGAAAGCATATAAAAAATTTCGGAG
GCTCATGTACAATAATGTCTGAAATCTGTTTCTAGTCTCCAAAGGATTTA
AGGACGACAACCACAATCTTTAAAGCAAATTTCTGGCCGTGGTGAACATT
CACAAGCAAGCAGCACCCGTCAAAGTAACAAATCAAAGCACAAAGATATA
GTATCACAGTAT back to topCoding sequence (CDS) from alignment at CM002466.1:267132..270393+ >rna5552 ID=rna5552|Name=rna5552|organism=Nannochloropsis gaditana|type=CDS|length=3960bp|location=Sequence derived from alignment at CM002466.1:267132..270393+ (Nannochloropsis gaditana)
ATGAACCCGGGCAGAGGGGTCAATGATGCGTCCACATACAACAAGGCACG
TTTATGTAATGGATCGGAAGGGGTGACAGCGTTGGAGTTTCTGACAGTGC
CAAATGTGGCCAAGACACCAATTTCATCGCGCATCGCTTTCCTGAAAAGC
AAGGGCTTTACCGAAACGGAAATTAGCGTTGCTCTACGTTTGGCTGGGGA
GGTGATGTGTAGCGGGCACAACACATCGTCACCAGCGACAAGACAGCCAG
CTTGTGTCGACCGAAGTATCGTGGACGTAAAGAGCGAGGCATGGGGCCCA
GTCGCCCGGGGTCATGCTTGgaattcctctttctcctccgcgtccgccCG
CAGAACATTTCAAAGTCACTTTGGGGACTCTGCTACGACACGCGTAGGAT
TCTCAGACCGGCAGGCACATGCTCATCATCAGAACGGGATCTTTTCTGGA
AGCGCGTTCCCTCCATCACAAGCGCCTCGAGGTGGCTTGAGAGGATGTGG
CCAGGACGTAGGAGAGGTCTCGGACATGATGGCGGCGATCAATGTAGCAA
AGAGTTCTATGCAAGGCGGTGCATTTTTTCGTGCGAAATCGCGAGGTGCA
TCACACGGGCTGTCAGAGCACTACATGCCACCGAGGCATGCGCAGGGGCG
GCTGCCGAcagcgtcgtcttcctctttctcgagTCGGTGGTCACACACTA
CGCCTGGGGGTTTGCAGCAAGGAGACCCACCGTATCGACTAATTGAAGCA
ACTGAATCTACGGAAGATGCACAAGGCGCGGGCTTGGCGCCTCCTCAACG
CCTCTTCCAGTCCCGACCTGACGCAACCTTCTCCACCGGcgtccctccag
gccccaGTCAGAACTCCCGTAACCCCTTTCACCAAGACCAAAGCCCCCCG
CTTTTTGACATAACGCACCAAAAGCAATTGCACGAGCATCGGCCTCCTAC
ATGCGCAATGCCGCTGGCCGAAATGCGAGGGCTCAAGCATGACGATAGCG
CGCGGTCGGGCATACAGTCTCAGGACTACCTTCAGGCGCCTGCTCATAAC
CATAATTACCAGTACTACTCATCGACATCGAATTTCAGACCCCCAAACAT
CGCGCACTGCGGCGCTGGGGACATACCAGTGACTGAATCGGGCTATCCGG
GGTATGCCCGTCACTTCGAAGCACGACGATATCATAAAACTTCCAGCGGT
GGGCATGCGGAGGTCCCGCGAGGCTCCGAGGGCGGCGTGATGTGGAGAGT
GCGGGGACACAGCTTCGCCGACGGTGTGGACTGTGATTTCCCTCCGAGCA
GCAGTGGTCGAGCGGATGTGCAATGGCAGGAGCAGCATGGAAAAGACAAA
AGAGAGTCGTCAAACCACCCTACCCCAGACACGTCTACGCACAATACGAT
CACAAGTCAGGGCAGTGACGATGCACTACCGTGGTTCAAAACCATCGCAA
GCGGGCGTGTTCAGAAACACTTAATGCGTTTCGTGAACAACTTTATCTCG
CAGCAAGATCTTGAAGACGAGCTCGGCCTGTACATGGCGGACATCTTCTA
CGAGACAGAGACCGGCCCCACAATGATGGCGCTTTACGACAAGCTGGAAC
GTCGCGTGAGCGAGCGCTGTCCAGGTCATTTGACAACATTCCGGGAAGAG
GCTTTGCAAAGCTTACATCAGCTCATGCAAGCCTgcgaggagcgggagga
gcagcaggagcagggccGTAAGGCTCTCAAGTCATCCGGGCAACGTGGTA
AGCCCGTCCGCAACGCAGCTAAGCGACTGGGGAAATCTCGGACAGAGGGC
CGCAAACTGGGCGCCATGATCGCGCATTATCGATCGCAGTGCCCCGTGGG
CAATACTGGATACGCTACCGGCAAAGACGATGCAAAGGATGTAAGCGATT
TCGCCCAGTATGGACCAGGAGGCTTGTGCCAGGAGAACTTACAGCCTCAA
TTAAGGAAAGCTGATACTCTGAAGAAATAAATGAACCCGGGCAGAGGGGT
CAATGATGCGTCCACATACAACAAGGCACGTTTATGTAATGGATCGGAAG
GGGTGACAGCGTTGGAGTTTCTGACAGTGCCAAATGTGGCCAAGACACCA
ATTTCATCGCGCATCGCTTTCCTGAAAAGCAAGGGCTTTACCGAAACGGA
AATTAGCGTTGCTCTACGTTTGGCTGGGGAGGTGATGTGTAGCGGGCACA
ACACATCGTCACCAGCGACAAGACAGCCAGCTTGTGTCGACCGAAGTATC
GTGGACGTAAAGAGCGAGGCATGGGGCCCAGTCGCCCGGGGTCATGCTTG
gaattcctctttctcctccgcgtccgccCGCAGAACATTTCAAAGTCACT
TTGGGGACTCTGCTACGACACGCGTAGGATTCTCAGACCGGCAGGCACAT
GCTCATCATCAGAACGGGATCTTTTCTGGAAGCGCGTTCCCTCCATCACA
AGCGCCTCGAGGTGGCTTGAGAGGATGTGGCCAGGACGTAGGAGAGGTCT
CGGACATGATGGCGGCGATCAATGTAGCAAAGAGTTCTATGCAAGGCGGT
GCATTTTTTCGTGCGAAATCGCGAGGTGCATCACACGGGCTGTCAGAGCA
CTACATGCCACCGAGGCATGCGCAGGGGCGGCTGCCGAcagcgtcgtctt
cctctttctcgagTCGGTGGTCACACACTACGCCTGGGGGTTTGCAGCAA
GGAGACCCACCGTATCGACTAATTGAAGCAACTGAATCTACGGAAGATGC
ACAAGGCGCGGGCTTGGCGCCTCCTCAACGCCTCTTCCAGTCCCGACCTG
ACGCAACCTTCTCCACCGGcgtccctccaggccccaGTCAGAACTCCCGT
AACCCCTTTCACCAAGACCAAAGCCCCCCGCTTTTTGACATAACGCACCA
AAAGCAATTGCACGAGCATCGGCCTCCTACATGCGCAATGCCGCTGGCCG
AAATGCGAGGGCTCAAGCATGACGATAGCGCGCGGTCGGGCATACAGTCT
CAGGACTACCTTCAGGCGCCTGCTCATAACCATAATTACCAGTACTACTC
ATCGACATCGAATTTCAGACCCCCAAACATCGCGCACTGCGGCGCTGGGG
ACATACCAGTGACTGAATCGGGCTATCCGGGGTATGCCCGTCACTTCGAA
GCACGACGATATCATAAAACTTCCAGCGGTGGGCATGCGGAGGTCCCGCG
AGGCTCCGAGGGCGGCGTGATGTGGAGAGTGCGGGGACACAGCTTCGCCG
ACGGTGTGGACTGTGATTTCCCTCCGAGCAGCAGTGGTCGAGCGGATGTG
CAATGGCAGGAGCAGCATGGAAAAGACAAAAGAGAGTCGTCAAACCACCC
TACCCCAGACACGTCTACGCACAATACGATCACAAGTCAGGGCAGTGACG
ATGCACTACCGTGGTTCAAAACCATCGCAAGCGGGCGTGTTCAGAAACAC
TTAATGCGTTTCGTGAACAACTTTATCTCGCAGCAAGATCTTGAAGACGA
GCTCGGCCTGTACATGGCGGACATCTTCTACGAGACAGAGACCGGCCCCA
CAATGATGGCGCTTTACGACAAGCTGGAACGTCGCGTGAGCGAGCGCTGT
CCAGGTCATTTGACAACATTCCGGGAAGAGGCTTTGCAAAGCTTACATCA
GCTCATGCAAGCCTgcgaggagcgggaggagcagcaggagcagggccGTA
AGGCTCTCAAGTCATCCGGGCAACGTGGTAAGCCCGTCCGCAACGCAGCT
AAGCGACTGGGGAAATCTCGGACAGAGGGCCGCAAACTGGGCGCCATGAT
CGCGCATTATCGATCGCAGTGCCCCGTGGGCAATACTGGATACGCTACCG
GCAAAGACGATGCAAAGGATGTAAGCGATTTCGCCCAGTATGGACCAGGA
GGCTTGTGCCAGGAGAACTTACAGCCTCAATTAAGGAAAGCTGATACTCT
GAAGAAATAA back to top
|