rna5547, rna5547 (mRNA) Nannochloropsis gaditana

Overview
Namerna5547
Unique Namerna5547
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length201
Alignment locationCM002466.1:257797..258012 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g62.2958.mrna
Orig protein idgnl|cribi|Naga_100016g62.2958
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:257797..258012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g62gene5360Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25149.1cds5533Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5547rna5547-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5547 ID=rna5547|Name=rna5547|organism=Nannochloropsis gaditana|type=mRNA|length=201bp
ATGCACGAATCCAACAGCGTGATCGGATTTGAACTTGTCAGGTCCACTGG
GATCCAAGATCCATCCTTTGCTTCTTTTGAGTCCTCCGGCTTCGGATCAT
CTCCGGAATTGACCCCTGCGGTGTCGGAGAATAAATTGATCTGGTTCCCC
GGATCCATCATGTCCGACGCCGCCGTTAGTCTTTCCCCCGCTCGTATCTG
A
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protein sequence of rna5547

>rna5547-protein ID=rna5547-protein|Name=rna5547|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MIYKGLKWKILAVFFDDILIFSQTAEQHIKDVETTLDRLIDAGLTVFPSE
YWPNSHTKAVFSTESVSTSTW
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mRNA from alignment at CM002466.1:257797..258012-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5547 ID=rna5547|Name=rna5547|organism=Nannochloropsis gaditana|type=mRNA|length=216bp|location=Sequence derived from alignment at CM002466.1:257797..258012- (Nannochloropsis gaditana)
ATGATCTATAAAGGCTTAAAATGGAAAATTCTGGCAGTCTTCTTCGATGA
CATTCTGATCTTCAGCCAGACCGCGGAACAGCACATCAAAGACGTCGAAA
CCACGCTGGACAGGCTCATCGACGCCGGATTGACGGTATTCCCGTCCGAG
TACTGGCCGAATTCACATACGAAGGCCGTTTTCTCCACTGAGTCCGTCTC
TACCTCTACTTGGTGA
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Coding sequence (CDS) from alignment at CM002466.1:257797..258012-

>rna5547 ID=rna5547|Name=rna5547|organism=Nannochloropsis gaditana|type=CDS|length=216bp|location=Sequence derived from alignment at CM002466.1:257797..258012- (Nannochloropsis gaditana)
ATGATCTATAAAGGCTTAAAATGGAAAATTCTGGCAGTCTTCTTCGATGA
CATTCTGATCTTCAGCCAGACCGCGGAACAGCACATCAAAGACGTCGAAA
CCACGCTGGACAGGCTCATCGACGCCGGATTGACGGTATTCCCGTCCGAG
TACTGGCCGAATTCACATACGAAGGCCGTTTTCTCCACTGAGTCCGTCTC
TACCTCTACTTGGTGA
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Synonyms
Publications