EWM25149.1, cds5533 (CDS) Nannochloropsis gaditana

Overview
NameEWM25149.1
Unique Namecds5533
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:257797..258012 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25149.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g62.2958.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:257797..258012 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25149.1 vs. NCBI_GenBank
Match: gi|585106787|gb|EWM25149.1| (hypothetical protein Naga_100016g62 [Nannochloropsis gaditana])

HSP 1 Score: 146.362 bits (368), Expect = 1.472e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
Query:    1 MIYKGLKWKILAVFFDDILIFSQTAEQHIKDVETTLDRLIDAGLTVFPSEYWPNSHTKAVFSTESVSTSTW 71
            MIYKGLKWKILAVFFDDILIFSQTAEQHIKDVETTLDRLIDAGLTVFPSEYWPNSHTKAVFSTESVSTSTW
Sbjct:    1 MIYKGLKWKILAVFFDDILIFSQTAEQHIKDVETTLDRLIDAGLTVFPSEYWPNSHTKAVFSTESVSTSTW 71          
BLAST of EWM25149.1 vs. NCBI_GenBank
Match: gi|585109632|gb|EWM27401.1| (pol polyprotein [Nannochloropsis gaditana])

HSP 1 Score: 68.1662 bits (165), Expect = 2.059e-12
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0
Query:   11 LAVFFDDILIFSQTAEQHIKDVETTLDRLIDAGLTVFPSE 50
            LAVFFDDIL+FS TAEQHIKD  TTL RL DAGLT +PS+
Sbjct:   48 LAVFFDDILVFSSTAEQHIKDAATTLHRLFDAGLTAYPSK 87          
BLAST of EWM25149.1 vs. NCBI_GenBank
Match: gi|669326643|gb|KFD66852.1| (hypothetical protein M514_20996 [Trichuris suis])

HSP 1 Score: 53.9138 bits (128), Expect = 8.459e-7
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:    1 MIYKGLKWKILAVFFDDILIFSQTAEQHIKDVETTLDRLIDAGLTVFPSE 50
            ++  GLKW+   V+ DD++IFS+T E+HIK +   L RL  AGL + PS+
Sbjct:  117 LVLAGLKWECCLVYLDDVIIFSRTFEEHIKRLAQVLQRLRGAGLKISPSK 166          
The following BLAST results are available for this feature:
BLAST of EWM25149.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106787|gb|EWM25149.1|1.472e-44100.00hypothetical protein Naga_100016g62 [Nannochlorops... [more]
gi|585109632|gb|EWM27401.1|2.059e-1277.50pol polyprotein [Nannochloropsis gaditana][more]
gi|669326643|gb|KFD66852.1|8.459e-746.00hypothetical protein M514_20996 [Trichuris suis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5547rna5547Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications