rna5540, rna5540 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5540
Unique Name	rna5540
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	828
Alignment location	CM002466.1:239053..240214 +

Link to JBrowse

Properties


Property Name	Value
Product	Golgi apparatus membrane protein TVP15
Orig transcript id	gnl\|cribi\|Naga_100016g69.2908.mrna
Orig protein id	gnl\|cribi\|Naga_100016g69.2908
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:239053..240214 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g69	gene5353	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5540	rna5540-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25099.1	cds5526	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:239053..240214+
coding sequence from alignment at CM002466.1:239053..240214+

mRNA sequence

>rna5540 ID=rna5540|Name=rna5540|organism=Nannochloropsis gaditana|type=mRNA|length=828bp
ATGGTCTTAGACTTGAGTGGCAGAAGGTGCCTGGTTACTGGCGGTACAGT
TCCTTCGTCGGTTGGGTACGCATGTGCAACAGCGTGTTTAGATGCAGGCG
CCGCAAGGGTTGTGGTCGTGGGCCGGAACGTTGCAAAGCTCGGTAATTCT
CCTCTACCTGGCCTGTCTTGTCTAGAAGGTAATCTAAAGAACCCTGAGAC
CATGGGAGCATTGTTAATTGATGCTATCAAGCTATTAGATGGCAGATTGG
ACGTACTAATCATCAGTGGGGGCAACGGCTACTCGGAGTATTTGGGCCTG
GATCCTACTGACGCGGCCAGCTACCGTCTCATGTACGACGTGGCAGTTCT
ATCACCTCTTCTATTAACTACTGCCGCTGCGCCCTACCTCAGCCAGTCTG
AAGGCGGTGGCTCGGTCGTTATGGTCAGTTCCCTCGCATCTCATGTTCCG
TGGCCGGACACGGCACCCTTCAACCTGGCCAAGGCTGCTCAAAACGCTCT
CATCGAGACTTTGGCCTTCAAACATCGTCAAGACGGTTTTAGGGTGAACG
GAATCCTGCCTGCTTGTATTCACACGGGAGCTTTGGACGTTATGGCAGCC
CGAAAAAACAAATCCGTCATAGACTACGCGGCTTTGCGCGCCGAGTCCCA
CCCCATGGGCCGCATCGGGACCCCCCAGGAGGTCGCTCACGCCGTGCTCT
TCCTGGCCTCCCCCGCTTCTTCTTTCACCACCGGCGCGCTCATACCGGTG
GACGGGGGACTTAAGCTTTCGTCCTGGTTCAATAGACCCAAGTTGCTGGC
GGAGTATGTCGGTGGCGCCAAGGCCTAG

protein sequence of rna5540

>rna5540-protein ID=rna5540-protein|Name=rna5540|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MNGDGGKVNSDDAFLLTPSPLLMILHDRPSCAKYVVPLSRFVNMGLACLM
AFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVF
RRNFGFMYGSRGKALYIIFKPQVLVQEHHCLFEFRPRQHRHPSIRNWHCT
GRRWGPHAFRDFQVSYFIFRERAGTSLSRSIASSCRGDQGAGLGMYALRW
MKRGSNANDGIELFASMRYNMKHYLKVWETDGRLQTKSKMGCGRHPTTNT
RFSSNRDILPKIPLIAPFLEK

mRNA from alignment at CM002466.1:239053..240214+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5540 ID=rna5540|Name=rna5540|organism=Nannochloropsis gaditana|type=mRNA|length=1162bp|location=Sequence derived from alignment at CM002466.1:239053..240214+ (Nannochloropsis gaditana)
atgaatggtgatggaggaaaggtaAATAGTGATGATGCTTTTCTTCTTAC
ACCATCCCCCTTACTCATGATTCTCCATGATAGGCCATCCTGCGCAAAAT
ATGTGGTTCCGCTGTCTCGTTTCGTCAATATGGGCCTCGCGTGCCTGATG
GCTTTTTCAGCAGTAAACGGCATTTTAAAGATCGCTCAATTACAGTTGGA
CACATTTTTTGTCGCTCTCTACATGTTGTGAGTAAGCAAGCGACTTCAAG
ACTTTGTGTGAGAACTGTATTTTGTTGCTCTCAATAATTTGTTGACGtcc
ctctgcttcttttttcaaCAGTATTTTCGCCGccatcctctttttctttg
agCTTTGTCAATTTAAATACGTTGCCTTCATTGACAACGTTTTCCGCAGA
AACTTCGGATTTATGTATGGTTCGCGGGGCAAGGCGCTTTACATCATCTT
gtaagagaaaagaagagagaacGGACGGTGAAAGGACGGATTGGAAAGTT
AAGGCCTTCAAAAGCTTAGTGACTCAGCAAGCCTCAGGTGCTAGTGCAGG
AACACGTGCGAATGGCTTGTCATGACATTTGGAAATAATTTTTAatcgcc
tctttcttttcaccCGGCTAGCATTGCCTTTTTGAATTTCGGCCTCGTCA
GCACAGGCATCCTTCAATTCGCAACTGGCATTGTACTGGCCGTCGATGGG
GGCCTCATGCTTTTCGCGACTTTCAAGTATCCTACTTTATTTTCAGGGAA
CGAGCCGGCACTTCCCTCAGCAGGAGCATCGCATCCAGCTGCCGCGGCGA
CCAAGGGGCCGGGCTAGGAATGTATGCTCTCAGGTGGAtgaagagaggaa
gcaaTGCGAACGACGGTATCGAACTATTTGCTAGCATGCGGGTAAGGCTT
TGCTTCTGATGTAGCTGTAAATTTCTTGGCGCAGATCTGGAGGCAAGGGA
ATGCGGAAAAAGTCGTGGCGAGTGGGAGAAATATTTGTGCTCTGTGAAAG
TACAACATGAAACATTATCTGAAAGTATGGGAAACTGATGGGCGGCTTCA
GACGAAGAGCAAGATGGGTTGTGGTAGGCACCCCACGACCAATACGCGAT
TCTCATCTAACCGTGATATTTTGCCAAAGATTCCACTCATTGCGCCCTTT
CTTGAAAAGTAG

Coding sequence (CDS) from alignment at CM002466.1:239053..240214+

>rna5540 ID=rna5540|Name=rna5540|organism=Nannochloropsis gaditana|type=CDS|length=4080bp|location=Sequence derived from alignment at CM002466.1:239053..240214+ (Nannochloropsis gaditana)
atgaatggtgatggaggaaaggtaAATAGTGATGATGCTTTTCTTCTTAC
ACCATCCCCCTTACTCATGATTCTCCATGATAGGCCATCCTGCGCAAAAT
ATGTGGTTCCGCTGTCTCGTTTCGTCAATATGGGCCTCGCGTGCCTGATG
GCTTTTTCAGCAGTAAACGGCATTTTAAAGATCGCTCAATTACAGTTGGA
CACATTTTTTGTCGCTCTCTACATGTTTATTTTCGCCGccatcctctttt
tctttgagCTTTGTCAATTTAAATACGTTGCCTTCATTGACAACGTTTTC
CGCAGAAACTTCGGATTTATGTATGGTTCGCGGGGCAAGGCGCTTTACAT
CATCTTCAAGCCTCAGGTGCTAGTGCAGGAACACCATTGCCTTTTTGAAT
TTCGGCCTCGTCAGCACAGGCATCCTTCAATTCGCAACTGGCATTGTACT
GGCCGTCGATGGGGGCCTCATGCTTTTCGCGACTTTCAAGTATCCTACTT
TATTTTCAGGGAACGAGCCGGCACTTCCCTCAGCAGGAGCATCGCATCCA
GCTGCCGCGGCGACCAAGGGGCCGGGCTAGGAATGTATGCTCTCAGGTGG
AtgaagagaggaagcaaTGCGAACGACGGTATCGAACTATTTGCTAGCAT
GCGGTACAACATGAAACATTATCTGAAAGTATGGGAAACTGATGGGCGGC
TTCAGACGAAGAGCAAGATGGGTTGTGGTAGGCACCCCACGACCAATACG
CGATTCTCATCTAACCGTGATATTTTGCCAAAGATTCCACTCATTGCGCC
CTTTCTTGAAAAGTAGatgaatggtgatggaggaaaggtaAATAGTGATG
ATGCTTTTCTTCTTACACCATCCCCCTTACTCATGATTCTCCATGATAGG
CCATCCTGCGCAAAATATGTGGTTCCGCTGTCTCGTTTCGTCAATATGGG
CCTCGCGTGCCTGATGGCTTTTTCAGCAGTAAACGGCATTTTAAAGATCG
CTCAATTACAGTTGGACACATTTTTTGTCGCTCTCTACATGTTTATTTTC
GCCGccatcctctttttctttgagCTTTGTCAATTTAAATACGTTGCCTT
CATTGACAACGTTTTCCGCAGAAACTTCGGATTTATGTATGGTTCGCGGG
GCAAGGCGCTTTACATCATCTTCAAGCCTCAGGTGCTAGTGCAGGAACAC
CATTGCCTTTTTGAATTTCGGCCTCGTCAGCACAGGCATCCTTCAATTCG
CAACTGGCATTGTACTGGCCGTCGATGGGGGCCTCATGCTTTTCGCGACT
TTCAAGTATCCTACTTTATTTTCAGGGAACGAGCCGGCACTTCCCTCAGC
AGGAGCATCGCATCCAGCTGCCGCGGCGACCAAGGGGCCGGGCTAGGAAT
GTATGCTCTCAGGTGGAtgaagagaggaagcaaTGCGAACGACGGTATCG
AACTATTTGCTAGCATGCGGTACAACATGAAACATTATCTGAAAGTATGG
GAAACTGATGGGCGGCTTCAGACGAAGAGCAAGATGGGTTGTGGTAGGCA
CCCCACGACCAATACGCGATTCTCATCTAACCGTGATATTTTGCCAAAGA
TTCCACTCATTGCGCCCTTTCTTGAAAAGTAGatgaatggtgatggagga
aaggtaAATAGTGATGATGCTTTTCTTCTTACACCATCCCCCTTACTCAT
GATTCTCCATGATAGGCCATCCTGCGCAAAATATGTGGTTCCGCTGTCTC
GTTTCGTCAATATGGGCCTCGCGTGCCTGATGGCTTTTTCAGCAGTAAAC
GGCATTTTAAAGATCGCTCAATTACAGTTGGACACATTTTTTGTCGCTCT
CTACATGTTTATTTTCGCCGccatcctctttttctttgagCTTTGTCAAT
TTAAATACGTTGCCTTCATTGACAACGTTTTCCGCAGAAACTTCGGATTT
ATGTATGGTTCGCGGGGCAAGGCGCTTTACATCATCTTCAAGCCTCAGGT
GCTAGTGCAGGAACACCATTGCCTTTTTGAATTTCGGCCTCGTCAGCACA
GGCATCCTTCAATTCGCAACTGGCATTGTACTGGCCGTCGATGGGGGCCT
CATGCTTTTCGCGACTTTCAAGTATCCTACTTTATTTTCAGGGAACGAGC
CGGCACTTCCCTCAGCAGGAGCATCGCATCCAGCTGCCGCGGCGACCAAG
GGGCCGGGCTAGGAATGTATGCTCTCAGGTGGAtgaagagaggaagcaaT
GCGAACGACGGTATCGAACTATTTGCTAGCATGCGGTACAACATGAAACA
TTATCTGAAAGTATGGGAAACTGATGGGCGGCTTCAGACGAAGAGCAAGA
TGGGTTGTGGTAGGCACCCCACGACCAATACGCGATTCTCATCTAACCGT
GATATTTTGCCAAAGATTCCACTCATTGCGCCCTTTCTTGAAAAGTAGat
gaatggtgatggaggaaaggtaAATAGTGATGATGCTTTTCTTCTTACAC
CATCCCCCTTACTCATGATTCTCCATGATAGGCCATCCTGCGCAAAATAT
GTGGTTCCGCTGTCTCGTTTCGTCAATATGGGCCTCGCGTGCCTGATGGC
TTTTTCAGCAGTAAACGGCATTTTAAAGATCGCTCAATTACAGTTGGACA
CATTTTTTGTCGCTCTCTACATGTTTATTTTCGCCGccatcctctttttc
tttgagCTTTGTCAATTTAAATACGTTGCCTTCATTGACAACGTTTTCCG
CAGAAACTTCGGATTTATGTATGGTTCGCGGGGCAAGGCGCTTTACATCA
TCTTCAAGCCTCAGGTGCTAGTGCAGGAACACCATTGCCTTTTTGAATTT
CGGCCTCGTCAGCACAGGCATCCTTCAATTCGCAACTGGCATTGTACTGG
CCGTCGATGGGGGCCTCATGCTTTTCGCGACTTTCAAGTATCCTACTTTA
TTTTCAGGGAACGAGCCGGCACTTCCCTCAGCAGGAGCATCGCATCCAGC
TGCCGCGGCGACCAAGGGGCCGGGCTAGGAATGTATGCTCTCAGGTGGAt
gaagagaggaagcaaTGCGAACGACGGTATCGAACTATTTGCTAGCATGC
GGTACAACATGAAACATTATCTGAAAGTATGGGAAACTGATGGGCGGCTT
CAGACGAAGAGCAAGATGGGTTGTGGTAGGCACCCCACGACCAATACGCG
ATTCTCATCTAACCGTGATATTTTGCCAAAGATTCCACTCATTGCGCCCT
TTCTTGAAAAGTAGatgaatggtgatggaggaaaggtaAATAGTGATGAT
GCTTTTCTTCTTACACCATCCCCCTTACTCATGATTCTCCATGATAGGCC
ATCCTGCGCAAAATATGTGGTTCCGCTGTCTCGTTTCGTCAATATGGGCC
TCGCGTGCCTGATGGCTTTTTCAGCAGTAAACGGCATTTTAAAGATCGCT
CAATTACAGTTGGACACATTTTTTGTCGCTCTCTACATGTTTATTTTCGC
CGccatcctctttttctttgagCTTTGTCAATTTAAATACGTTGCCTTCA
TTGACAACGTTTTCCGCAGAAACTTCGGATTTATGTATGGTTCGCGGGGC
AAGGCGCTTTACATCATCTTCAAGCCTCAGGTGCTAGTGCAGGAACACCA
TTGCCTTTTTGAATTTCGGCCTCGTCAGCACAGGCATCCTTCAATTCGCA
ACTGGCATTGTACTGGCCGTCGATGGGGGCCTCATGCTTTTCGCGACTTT
CAAGTATCCTACTTTATTTTCAGGGAACGAGCCGGCACTTCCCTCAGCAG
GAGCATCGCATCCAGCTGCCGCGGCGACCAAGGGGCCGGGCTAGGAATGT
ATGCTCTCAGGTGGAtgaagagaggaagcaaTGCGAACGACGGTATCGAA
CTATTTGCTAGCATGCGGTACAACATGAAACATTATCTGAAAGTATGGGA
AACTGATGGGCGGCTTCAGACGAAGAGCAAGATGGGTTGTGGTAGGCACC
CCACGACCAATACGCGATTCTCATCTAACCGTGATATTTTGCCAAAGATT
CCACTCATTGCGCCCTTTCTTGAAAAGTAG

Synonyms

Publications