EWM25099.1, cds5526 (CDS) Nannochloropsis gaditana

Overview
NameEWM25099.1
Unique Namecds5526
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:239053..239279 +
Alignment locationCM002466.1:239374..239502 +
Alignment locationCM002466.1:239580..239607 +
Alignment locationCM002466.1:239674..239943 +
Alignment locationCM002466.1:240053..240214 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25099.1
ProductGolgi apparatus membrane protein TVP15
Orig transcript idgnl|cribi|Naga_100016g69.2908.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:239053..239279 +
CM002466.1supercontigCM002466.1:239374..239502 +
CM002466.1supercontigCM002466.1:239580..239607 +
CM002466.1supercontigCM002466.1:239674..239943 +
CM002466.1supercontigCM002466.1:240053..240214 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013714Golgi_TVP15
Homology
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|585106737|gb|EWM25099.1| (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query:    1 MNGDGGKVNSDDAFLLTPSPLLMILHDRPSCAKYVVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIFKPQVLVQEHHCLFEFRPRQHRHPSIRNWHCTGRRWGPHAFRDFQVSYFIFRERAGTSLSRSIASSCRGDQGAGLGMYALRWMKRGSNANDGIELFASMRYNMKHYLKVWETDGRLQTKSKMGCGRHPTTNTRFSSNRDILPKIPLIAPFLEK 271
            MNGDGGKVNSDDAFLLTPSPLLMILHDRPSCAKYVVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIFKPQVLVQEHHCLFEFRPRQHRHPSIRNWHCTGRRWGPHAFRDFQVSYFIFRERAGTSLSRSIASSCRGDQGAGLGMYALRWMKRGSNANDGIELFASMRYNMKHYLKVWETDGRLQTKSKMGCGRHPTTNTRFSSNRDILPKIPLIAPFLEK
Sbjct:    1 MNGDGGKVNSDDAFLLTPSPLLMILHDRPSCAKYVVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIFKPQVLVQEHHCLFEFRPRQHRHPSIRNWHCTGRRWGPHAFRDFQVSYFIFRERAGTSLSRSIASSCRGDQGAGLGMYALRWMKRGSNANDGIELFASMRYNMKHYLKVWETDGRLQTKSKMGCGRHPTTNTRFSSNRDILPKIPLIAPFLEK 271          
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|219120043|ref|XP_002180769.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407485|gb|EEC47421.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 69.3218 bits (168), Expect = 1.379e-10
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 0
Query:   32 AKYVVPLSRFVNMGLACLMAFSAVNGILKI---AQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
            A++ + L  F+N GLA +M    V  ++     +       F++ YM IFA ILF +EL  +  +A ++ +FR NFGFMYG RGK L+++F
Sbjct:   46 ARWAISLLSFLNFGLAAMMGTLGVLSLIHFNPGSSSDYSAAFLSSYMVIFAVILFLYELIWWTPIAALNKMFRMNFGFMYGLRGKGLFLVF 136          
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|1072229934|gb|OEU14668.1| (hypothetical protein FRACYDRAFT_209434 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 67.781 bits (164), Expect = 5.318e-10
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 0
Query:   35 VVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTF---FVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
            V+ L   +NMGLA +M    V  I+++ +  L      F+A YM +FAA+LF +EL  +  V  ++   R+NFGFMYG RGK LY+IF
Sbjct:   53 VLCLLSLMNMGLAAMMTALGVLTIIQVHRTGLGDLSEPFLAAYMVLFAALLFIYELMWWSPVPKLNKDMRKNFGFMYGLRGKGLYLIF 140          
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|1210517553|dbj|GAX23468.1| (hypothetical protein FisN_14Hh363 [Fistulifera solaris])

HSP 1 Score: 63.5438 bits (153), Expect = 1.809e-8
Identity = 33/96 (34.38%), Postives = 58/96 (60.42%), Query Frame = 0
Query:   27 DRPSCAKYVVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTF---FVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
            +R     ++  LS  +++GLA +MA   +  ++++   +L+     F+A+YM +FA +L  +E   ++ V  I+  FR+NFGFMYG +GK  Y+IF
Sbjct:   44 EREKTKCWIAALS-LLDLGLAAMMAALGLLSLIEMDFKELNDVTEAFLAIYMVVFAVLLAMYEFAWWQPVPSINKTFRKNFGFMYGLKGKGFYLIF 138          
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|1210527639|dbj|GAX13625.1| (hypothetical protein FisN_14Lh363 [Fistulifera solaris])

HSP 1 Score: 63.1586 bits (152), Expect = 1.873e-8
Identity = 33/96 (34.38%), Postives = 58/96 (60.42%), Query Frame = 0
Query:   27 DRPSCAKYVVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTF---FVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
            +R     ++  LS  +++GLA +MA   +  ++++   +L+     F+A+YM +FA +L  +E   ++ V  I+  FR+NFGFMYG +GK  Y+IF
Sbjct:   45 EREKTKCWIAALS-LLDLGLAAMMAALGLLSLIEMDFKELNDVTEAFLAIYMVVFAVLLAMYEFAWWQPVPSINKTFRKNFGFMYGLKGKGFYLIF 139          
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|675208235|ref|XP_008913002.1| (hypothetical protein PPTG_17115, partial [Phytophthora parasitica INRA-310] >gi|567949810|gb|ETK75535.1| hypothetical protein L915_17845, partial [Phytophthora parasitica] >gi|567978506|gb|ETL28993.1| hypothetical protein L916_17745, partial [Phytophthora parasitica] >gi|568037890|gb|ETM35440.1| hypothetical protein L914_17657, partial [Phytophthora parasitica] >gi|568086806|gb|ETN01687.1| hypothetical protein PPTG_17115, partial [Phytophthora parasitica INRA-310] >gi|570939871|gb|ETP05128.1| hypothetical protein F441_18214, partial [Phytophthora parasitica CJ01A1] >gi|570970127|gb|ETP33246.1| hypothetical protein F442_18166, partial [Phytophthora parasitica P10297])

HSP 1 Score: 60.077 bits (144), Expect = 1.737e-7
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 0
Query:   40 RFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
            R +N+  ACL   + VN ++ I  L +  F +A+Y  +FA +L  FE     +++  DN+ R NFGF+YG RG   Y++F
Sbjct:   22 RVLNLLTACLQLAAGVNSLVGIFLLDVTQFLIAVYAIVFALLLVCFEC----HLSVTDNILRPNFGFLYGYRGMTTYLVF 97          
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|224005276|ref|XP_002296289.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209586321|gb|ACI65006.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 60.4622 bits (145), Expect = 2.042e-7
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 0
Query:   29 PSCAKYVVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
            P  A  +  L    ++ L+ LM    V GI+      L   FV++YM +FA +LF FEL  +K +  ++   R NFGF+YG +GKA Y+IF
Sbjct:   52 PGKANCIQRLFSLWDICLSALMCCLGVFGIID-NPTSLPEIFVSVYMILFATLLFLFELMWWKSIDSVNKNLRMNFGFLYGIKGKAAYLIF 141          
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|566012365|gb|ETI35276.1| (hypothetical protein F443_18337, partial [Phytophthora parasitica P1569] >gi|568007978|gb|ETL82203.1| hypothetical protein L917_17574, partial [Phytophthora parasitica] >gi|570316069|gb|ETO64017.1| hypothetical protein F444_18356, partial [Phytophthora parasitica P1976])

HSP 1 Score: 60.077 bits (144), Expect = 2.135e-7
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 0
Query:   40 RFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
            R +N+  ACL   + VN ++ I  L +  F +A+Y  +FA +L  FE     +++  DN+ R NFGF+YG RG   Y++F
Sbjct:   22 RVLNLLTACLQLAAGVNSLVGIFLLDVTQFLIAVYAIVFALLLVCFEC----HLSVTDNILRPNFGFLYGYRGMTAYLVF 97          
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|1214695473|gb|OWZ09248.1| (hypothetical protein PHMEG_00018082 [Phytophthora megakarya])

HSP 1 Score: 58.151 bits (139), Expect = 9.101e-7
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 0
Query:   40 RFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
            R +N+  AC      VN +L I  L +  F +A+Y  +FA +L  FE     +++  DN+ R NFGF+YG RG   Y++F
Sbjct:   17 RVLNLLTACAQLTGGVNSLLSIFLLNVMEFLIAVYAIVFALLLLCFEC----HLSVTDNILRPNFGFLYGYRGMTTYLVF 92          
The following BLAST results are available for this feature:
BLAST of EWM25099.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585106737|gb|EWM25099.1|0.000e+0100.00Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
gi|219120043|ref|XP_002180769.1|1.379e-1038.46predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072229934|gb|OEU14668.1|5.318e-1043.18hypothetical protein FRACYDRAFT_209434 [Fragilario... [more]
gi|1210517553|dbj|GAX23468.1|1.809e-834.38hypothetical protein FisN_14Hh363 [Fistulifera sol... [more]
gi|1210527639|dbj|GAX13625.1|1.873e-834.38hypothetical protein FisN_14Lh363 [Fistulifera sol... [more]
gi|675208235|ref|XP_008913002.1|1.737e-737.50hypothetical protein PPTG_17115, partial [Phytopht... [more]
gi|224005276|ref|XP_002296289.1|2.042e-738.46predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|566012365|gb|ETI35276.1|2.135e-737.50hypothetical protein F443_18337, partial [Phytopht... [more]
gi|1214695473|gb|OWZ09248.1|9.101e-737.50hypothetical protein PHMEG_00018082 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5540rna5540Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications