EWM25099.1, cds5526 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|585106737|gb|EWM25099.1| (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana]) HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query: 1 MNGDGGKVNSDDAFLLTPSPLLMILHDRPSCAKYVVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIFKPQVLVQEHHCLFEFRPRQHRHPSIRNWHCTGRRWGPHAFRDFQVSYFIFRERAGTSLSRSIASSCRGDQGAGLGMYALRWMKRGSNANDGIELFASMRYNMKHYLKVWETDGRLQTKSKMGCGRHPTTNTRFSSNRDILPKIPLIAPFLEK 271
MNGDGGKVNSDDAFLLTPSPLLMILHDRPSCAKYVVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIFKPQVLVQEHHCLFEFRPRQHRHPSIRNWHCTGRRWGPHAFRDFQVSYFIFRERAGTSLSRSIASSCRGDQGAGLGMYALRWMKRGSNANDGIELFASMRYNMKHYLKVWETDGRLQTKSKMGCGRHPTTNTRFSSNRDILPKIPLIAPFLEK
Sbjct: 1 MNGDGGKVNSDDAFLLTPSPLLMILHDRPSCAKYVVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIFKPQVLVQEHHCLFEFRPRQHRHPSIRNWHCTGRRWGPHAFRDFQVSYFIFRERAGTSLSRSIASSCRGDQGAGLGMYALRWMKRGSNANDGIELFASMRYNMKHYLKVWETDGRLQTKSKMGCGRHPTTNTRFSSNRDILPKIPLIAPFLEK 271
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|219120043|ref|XP_002180769.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407485|gb|EEC47421.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 69.3218 bits (168), Expect = 1.379e-10 Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 0
Query: 32 AKYVVPLSRFVNMGLACLMAFSAVNGILKI---AQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
A++ + L F+N GLA +M V ++ + F++ YM IFA ILF +EL + +A ++ +FR NFGFMYG RGK L+++F
Sbjct: 46 ARWAISLLSFLNFGLAAMMGTLGVLSLIHFNPGSSSDYSAAFLSSYMVIFAVILFLYELIWWTPIAALNKMFRMNFGFMYGLRGKGLFLVF 136
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|1072229934|gb|OEU14668.1| (hypothetical protein FRACYDRAFT_209434 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 67.781 bits (164), Expect = 5.318e-10 Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 0
Query: 35 VVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTF---FVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
V+ L +NMGLA +M V I+++ + L F+A YM +FAA+LF +EL + V ++ R+NFGFMYG RGK LY+IF
Sbjct: 53 VLCLLSLMNMGLAAMMTALGVLTIIQVHRTGLGDLSEPFLAAYMVLFAALLFIYELMWWSPVPKLNKDMRKNFGFMYGLRGKGLYLIF 140
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|1210517553|dbj|GAX23468.1| (hypothetical protein FisN_14Hh363 [Fistulifera solaris]) HSP 1 Score: 63.5438 bits (153), Expect = 1.809e-8 Identity = 33/96 (34.38%), Postives = 58/96 (60.42%), Query Frame = 0
Query: 27 DRPSCAKYVVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTF---FVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
+R ++ LS +++GLA +MA + ++++ +L+ F+A+YM +FA +L +E ++ V I+ FR+NFGFMYG +GK Y+IF
Sbjct: 44 EREKTKCWIAALS-LLDLGLAAMMAALGLLSLIEMDFKELNDVTEAFLAIYMVVFAVLLAMYEFAWWQPVPSINKTFRKNFGFMYGLKGKGFYLIF 138
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|1210527639|dbj|GAX13625.1| (hypothetical protein FisN_14Lh363 [Fistulifera solaris]) HSP 1 Score: 63.1586 bits (152), Expect = 1.873e-8 Identity = 33/96 (34.38%), Postives = 58/96 (60.42%), Query Frame = 0
Query: 27 DRPSCAKYVVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTF---FVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
+R ++ LS +++GLA +MA + ++++ +L+ F+A+YM +FA +L +E ++ V I+ FR+NFGFMYG +GK Y+IF
Sbjct: 45 EREKTKCWIAALS-LLDLGLAAMMAALGLLSLIEMDFKELNDVTEAFLAIYMVVFAVLLAMYEFAWWQPVPSINKTFRKNFGFMYGLKGKGFYLIF 139
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|675208235|ref|XP_008913002.1| (hypothetical protein PPTG_17115, partial [Phytophthora parasitica INRA-310] >gi|567949810|gb|ETK75535.1| hypothetical protein L915_17845, partial [Phytophthora parasitica] >gi|567978506|gb|ETL28993.1| hypothetical protein L916_17745, partial [Phytophthora parasitica] >gi|568037890|gb|ETM35440.1| hypothetical protein L914_17657, partial [Phytophthora parasitica] >gi|568086806|gb|ETN01687.1| hypothetical protein PPTG_17115, partial [Phytophthora parasitica INRA-310] >gi|570939871|gb|ETP05128.1| hypothetical protein F441_18214, partial [Phytophthora parasitica CJ01A1] >gi|570970127|gb|ETP33246.1| hypothetical protein F442_18166, partial [Phytophthora parasitica P10297]) HSP 1 Score: 60.077 bits (144), Expect = 1.737e-7 Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 0
Query: 40 RFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
R +N+ ACL + VN ++ I L + F +A+Y +FA +L FE +++ DN+ R NFGF+YG RG Y++F
Sbjct: 22 RVLNLLTACLQLAAGVNSLVGIFLLDVTQFLIAVYAIVFALLLVCFEC----HLSVTDNILRPNFGFLYGYRGMTTYLVF 97
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|224005276|ref|XP_002296289.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209586321|gb|ACI65006.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 60.4622 bits (145), Expect = 2.042e-7 Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 0
Query: 29 PSCAKYVVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
P A + L ++ L+ LM V GI+ L FV++YM +FA +LF FEL +K + ++ R NFGF+YG +GKA Y+IF
Sbjct: 52 PGKANCIQRLFSLWDICLSALMCCLGVFGIID-NPTSLPEIFVSVYMILFATLLFLFELMWWKSIDSVNKNLRMNFGFLYGIKGKAAYLIF 141
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|566012365|gb|ETI35276.1| (hypothetical protein F443_18337, partial [Phytophthora parasitica P1569] >gi|568007978|gb|ETL82203.1| hypothetical protein L917_17574, partial [Phytophthora parasitica] >gi|570316069|gb|ETO64017.1| hypothetical protein F444_18356, partial [Phytophthora parasitica P1976]) HSP 1 Score: 60.077 bits (144), Expect = 2.135e-7 Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 0
Query: 40 RFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
R +N+ ACL + VN ++ I L + F +A+Y +FA +L FE +++ DN+ R NFGF+YG RG Y++F
Sbjct: 22 RVLNLLTACLQLAAGVNSLVGIFLLDVTQFLIAVYAIVFALLLVCFEC----HLSVTDNILRPNFGFLYGYRGMTAYLVF 97
BLAST of EWM25099.1 vs. NCBI_GenBank
Match: gi|1214695473|gb|OWZ09248.1| (hypothetical protein PHMEG_00018082 [Phytophthora megakarya]) HSP 1 Score: 58.151 bits (139), Expect = 9.101e-7 Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 0
Query: 40 RFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
R +N+ AC VN +L I L + F +A+Y +FA +L FE +++ DN+ R NFGF+YG RG Y++F
Sbjct: 17 RVLNLLTACAQLTGGVNSLLSIFLLNVMEFLIAVYAIVFALLLLCFEC----HLSVTDNILRPNFGFLYGYRGMTTYLVF 92 The following BLAST results are available for this feature:
BLAST of EWM25099.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 9
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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