rna5539, rna5539 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5539
Unique Name	rna5539
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	225
Alignment location	CM002466.1:237320..238147 -

Link to JBrowse

Properties


Property Name	Value
Product	short chain dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100016g70.2921.mrna
Orig protein id	gnl\|cribi\|Naga_100016g70.2921
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:237320..238147 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g70	gene5352	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25112.1	cds5525	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5539	rna5539-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:237320..238147-
coding sequence from alignment at CM002466.1:237320..238147-

mRNA sequence

>rna5539 ID=rna5539|Name=rna5539|organism=Nannochloropsis gaditana|type=mRNA|length=225bp
ATGAGTGGATGGTGTGAGCGCTTGGTTCAAGAGGGTAAGAGGAGGGATTT
GCAGGGCGGAGGCGACGTCGGCTGTGGGGATGGCAGGGCCCTCCTAGTAT
CCCCGCTGCCAAATATCCGAAGGGTGGACAGCTTGCGTGGGAGTTCAAAA
ATGCATGGGAGCTCTAAAACACAAGACATGATTACTTCAATAAAGTGGAA
GCCAGGGGAAGCGAGGTCTTACTAG

protein sequence of rna5539

>rna5539-protein ID=rna5539-protein|Name=rna5539|organism=Nannochloropsis gaditana|type=polypeptide|length=275bp
MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGNS
PLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGL
DPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVP
WPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAA
RKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPV
DGGLKLSSWFNRPKLLAEYVGGAKA

mRNA from alignment at CM002466.1:237320..238147-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5539 ID=rna5539|Name=rna5539|organism=Nannochloropsis gaditana|type=mRNA|length=828bp|location=Sequence derived from alignment at CM002466.1:237320..238147- (Nannochloropsis gaditana)
ATGGTCTTAGACTTGAGTGGCAGAAGGTGCCTGGTTACTGGCGGTACAGT
TCCTTCGTCGGTTGGGTACGCATGTGCAACAGCGTGTTTAGATGCAGGCG
CCGCAAGGGTTGTGGTCGTGGGCCGGAACGTTGCAAAGCTCGGTAATTCT
CCTCTACCTGGCCTGTCTTGTCTAGAAGGTAATCTAAAGAACCCTGAGAC
CATGGGAGCATTGTTAATTGATGCTATCAAGCTATTAGATGGCAGATTGG
ACGTACTAATCATCAGTGGGGGCAACGGCTACTCGGAGTATTTGGGCCTG
GATCCTACTGACGCGGCCAGCTACCGTCTCATGTACGACGTGGCAGTTCT
ATCACCTCTTCTATTAACTACTGCCGCTGCGCCCTACCTCAGCCAGTCTG
AAGGCGGTGGCTCGGTCGTTATGGTCAGTTCCCTCGCATCTCATGTTCCG
TGGCCGGACACGGCACCCTTCAACCTGGCCAAGGCTGCTCAAAACGCTCT
CATCGAGACTTTGGCCTTCAAACATCGTCAAGACGGTTTTAGGGTGAACG
GAATCCTGCCTGCTTGTATTCACACGGGAGCTTTGGACGTTATGGCAGCC
CGAAAAAACAAATCCGTCATAGACTACGCGGCTTTGCGCGCCGAGTCCCA
CCCCATGGGCCGCATCGGGACCCCCCAGGAGGTCGCTCACGCCGTGCTCT
TCCTGGCCTCCCCCGCTTCTTCTTTCACCACCGGCGCGCTCATACCGGTG
GACGGGGGACTTAAGCTTTCGTCCTGGTTCAATAGACCCAAGTTGCTGGC
GGAGTATGTCGGTGGCGCCAAGGCCTAG

Coding sequence (CDS) from alignment at CM002466.1:237320..238147-

>rna5539 ID=rna5539|Name=rna5539|organism=Nannochloropsis gaditana|type=CDS|length=828bp|location=Sequence derived from alignment at CM002466.1:237320..238147- (Nannochloropsis gaditana)
ATGGTCTTAGACTTGAGTGGCAGAAGGTGCCTGGTTACTGGCGGTACAGT
TCCTTCGTCGGTTGGGTACGCATGTGCAACAGCGTGTTTAGATGCAGGCG
CCGCAAGGGTTGTGGTCGTGGGCCGGAACGTTGCAAAGCTCGGTAATTCT
CCTCTACCTGGCCTGTCTTGTCTAGAAGGTAATCTAAAGAACCCTGAGAC
CATGGGAGCATTGTTAATTGATGCTATCAAGCTATTAGATGGCAGATTGG
ACGTACTAATCATCAGTGGGGGCAACGGCTACTCGGAGTATTTGGGCCTG
GATCCTACTGACGCGGCCAGCTACCGTCTCATGTACGACGTGGCAGTTCT
ATCACCTCTTCTATTAACTACTGCCGCTGCGCCCTACCTCAGCCAGTCTG
AAGGCGGTGGCTCGGTCGTTATGGTCAGTTCCCTCGCATCTCATGTTCCG
TGGCCGGACACGGCACCCTTCAACCTGGCCAAGGCTGCTCAAAACGCTCT
CATCGAGACTTTGGCCTTCAAACATCGTCAAGACGGTTTTAGGGTGAACG
GAATCCTGCCTGCTTGTATTCACACGGGAGCTTTGGACGTTATGGCAGCC
CGAAAAAACAAATCCGTCATAGACTACGCGGCTTTGCGCGCCGAGTCCCA
CCCCATGGGCCGCATCGGGACCCCCCAGGAGGTCGCTCACGCCGTGCTCT
TCCTGGCCTCCCCCGCTTCTTCTTTCACCACCGGCGCGCTCATACCGGTG
GACGGGGGACTTAAGCTTTCGTCCTGGTTCAATAGACCCAAGTTGCTGGC
GGAGTATGTCGGTGGCGCCAAGGCCTAG

Synonyms

Publications