EWM25112.1, cds5525 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|585106750|gb|EWM25112.1| (short chain dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 554.288 bits (1427), Expect = 0.000e+0 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0
Query: 1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGNSPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLLAEYVGGAKA 275
MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGNSPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLLAEYVGGAKA
Sbjct: 1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGNSPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLLAEYVGGAKA 275
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|1072230715|gb|OEU15448.1| (NAD(P)-binding protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 244.202 bits (622), Expect = 1.341e-77 Identity = 126/215 (58.60%), Postives = 164/215 (76.28%), Query Frame = 0
Query: 60 GNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQS--EGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLLAEYVGG 272
G+LK PETM A ++D G +D+L+ SGGNGYSEYLGLD D SYR+M DVAVLSP+ L AA P+LS+S + GG+VV+V S++++V WP+TAP N A A++N + +TLAFK+R D RVNG+ IHTGALDVMA +KN+SV YAALRA + P+GR GTP++VA+AV++LASPAS FTTG L+ VDGGL LS+W+N+ +L EY GG
Sbjct: 16 GDLKKPETM-AEVVDKANTAMGGIDILVCSGGNGYSEYLGLDVKDPESYRMMQDVAVLSPMFLAEAAFPFLSKSTNKNGGTVVVVGSVSANVAWPNTAPHNFAMASKNTMTQTLAFKYRNDNIRVNGVQAGVIHTGALDVMAVKKNRSVESYAALRASAQPLGRCGTPEDVANAVVYLASPASGFTTGELLRVDGGLHLSNWWNQQTMLNEYKGG 229
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|971515328|dbj|GAQ82860.1| (3-oxoacyl-(acyl carrier protein) reductase [Klebsormidium nitens]) HSP 1 Score: 213.001 bits (541), Expect = 6.532e-65 Identity = 124/262 (47.33%), Postives = 169/262 (64.50%), Query Frame = 0
Query: 8 RRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVA--KLGNSPLPGLS-CLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLL 266
+R LVTGG+ S VG+A A A L A A V ++ RN K LPG S + +L + A + DA++++ G LDVLI +G NG SEYLG + S+ ++ + V S + L AA P L +S G ++V VSS A+ PWP T P+N+AKAA NALI +LA H + G RVNG+LPACIHT LD A +K S +YA+ RA SHP+GR+GT ++VA A+LFLASPA++F TG L+ VDGGL L++WFN +++
Sbjct: 13 KRVLVTGGS--SGVGFATAQA-LSASGAVVTLLARNEEPLKAACEELPGTSHYVVADLTEVAQLKAAVADAVQVMGG-LDVLIANGANGGSEYLGQPAWEPESFTSLHQIHVNSLVTLAQAALPELIKSRG--NIVSVSSAAAETPWPQTTPYNVAKAALNALIHSLAIAHAKHGVRVNGVLPACIHTPHLDKAAEKKGVSAEEYASARARSHPLGRVGTAKDVAGAILFLASPAAAFVTGELLRVDGGLSLTNWFNTQEMM 268
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|545371517|ref|XP_005650312.1| (putative alcohol dehydrogenase [Coccomyxa subellipsoidea C-169] >gi|384252292|gb|EIE25768.1| putative alcohol dehydrogenase [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 149.443 bits (376), Expect = 3.998e-40 Identity = 100/264 (37.88%), Postives = 148/264 (56.06%), Query Frame = 0
Query: 1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGN--SPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNR 262
++ DL G+R LVTGG+ + +G A A+A DA V V+GR + +L L + +L E + + +AI+ L G LD+L+ +GG+G E +D D A++ + + V S L L AA L +++G +VV +SS+ + +P + + +AKAAQ+ L LAF+ G R+N ILP I+T A + A + D A A H MGR+G P EVA A++FLAS A+SF TG +PVDGG L WFN+
Sbjct: 8 IIPDLKGKRVLVTGGS--AGIGKAAASA-FDANGCSVAVLGRTLQRLDAVAKQLKHGVPIVADLTKKEDLERAVAEAIEKLGG-LDILVNNGGDGTRE---IDGMDEAAFISFFKLHVTSHLTLIKAAEEELIKNKG--TVVNISSVMATIPAEEDMAYGVAKAAQDKLTRDLAFEFAPKGVRINSILPGVINTEAQEGNAKAMGMAKTDLLAKFAPLHAMGRVGEPHEVAAAIVFLASSAASFITGVNLPVDGGATLGYWFNK 262
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|545365871|ref|XP_005647870.1| (NAD(P)-binding protein [Coccomyxa subellipsoidea C-169] >gi|384249846|gb|EIE23326.1| NAD(P)-binding protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 145.591 bits (366), Expect = 1.020e-38 Identity = 99/268 (36.94%), Postives = 145/268 (54.10%), Query Frame = 0
Query: 1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLG--NSPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLL 266
++ DL G+R L+TGG+ + +G A A DA V V+GR + +L + L + +L + M + +AI+ L G LD+L+ SGG E G D A+Y + + V L L AA L +++G ++V +SS+A+ P AP+ +AKAAQ+ L + LAF+ G RVN ILPA I+T A D MA ++ + A A H R+ P+EVA ++FLAS A+SF TG + VDGG L WFNR +
Sbjct: 8 IIPDLQGKRVLITGGS--AGIGKAAAHQ-FDANGCHVAVLGRRLERLDAVSKQLKHGVSIVADLTKEDDMKRAVKEAIEKLGG-LDILVNSGGVTTEEMNG---NDEAAYIAAFKLHVTGNLTLIRAAEEELIKNKG--AIVNISSVAAIFPAATFAPYGVAKAAQDKLTQDLAFEFAPKGVRVNSILPAAINTEAFDNMAEKQGVPKEEIIAKLAPHHAQNRVAEPEEVAAPIVFLASNAASFITGVNLRVDGGATLGYWFNRASMF 266
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|545362850|ref|XP_005646625.1| (short-chain dehydrogenase-like protein [Coccomyxa subellipsoidea C-169] >gi|384248597|gb|EIE22081.1| short-chain dehydrogenase-like protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 142.51 bits (358), Expect = 1.890e-37 Identity = 100/269 (37.17%), Postives = 146/269 (54.28%), Query Frame = 0
Query: 1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGN--SPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVP-WPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLL 266
++ DL G+R LVTGG+ + +G A A A DA + V V+GR + +L S L + +L E + + + I+ L G LD+L+ SGG + D A++ Y + V L L AA L +++G +V+ +SS+A+ +P + + + +AKAAQ+ L + LAF+ G RVN ILPA I T D MA +K D A A H M R+G P+E+A ++FLAS A+SF TG + VDGG L WFNR L
Sbjct: 8 IIADLKGKRVLVTGGS--AGIGKAAAFA-FDANGSSVAVLGRRLERLEAVASQLKHGVSIVADLTKEEDLKRAIKETIEKLGG-LDILVNSGGAVTDDMFN---GDEAAFISAYKLHVTGNLTLIRAAEEELIKNKG--AVINISSVAAIMPTHANFSAYGVAKAAQDKLTQDLAFEFAPKGVRVNSILPATIDTEVFDTMAEQKGTPKADLLAGMAPWHAMNRVGQPEEIAAPIVFLASDAASFITGVNLRVDGGATLGYWFNRTSFL 267
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|545365906|ref|XP_005647887.1| (hypothetical protein COCSUDRAFT_41609 [Coccomyxa subellipsoidea C-169] >gi|384249863|gb|EIE23343.1| hypothetical protein COCSUDRAFT_41609 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 138.272 bits (347), Expect = 5.998e-36 Identity = 97/264 (36.74%), Postives = 143/264 (54.17%), Query Frame = 0
Query: 1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLG--NSPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNR 262
++ DL G+R L+TGG+ S +G A A + DA +V ++GR + +L + L + +L E M + + I+ L G LD+LI SGG GL D A++ + + V L L AA L +++G SVV +SS + +P + +AKAAQ+ L LAF++ G R N +LP I+T D MA K D A +HP+GR+ P+EVA A++FLAS A+SF TG + VDGG+ L WFN+
Sbjct: 7 IIPDLKGKRVLITGGS--SGIGKAAAFS-FDANNCKVAILGRRLERLDAVSKQLKHGVSIVADLTKEEDMKRAVKETIEKLGG-LDILINSGG----ASTGLPGDDEAAFIAEFKLHVTGNLTLIKAAEEELIKNKG--SVVNISSAIAIMPAVGFLTYGVAKAAQDKLTRDLAFQYAPKGVRFNSLLPGVINTELYDGMAEAKGVPKADLMAGLGTTHPLGRVAEPEEVAAAIVFLASNAASFITGVNLLVDGGMTLGYWFNK 260
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|545365897|ref|XP_005647883.1| (NAD(P)-binding protein [Coccomyxa subellipsoidea C-169] >gi|384249859|gb|EIE23339.1| NAD(P)-binding protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 132.494 bits (332), Expect = 1.171e-33 Identity = 102/271 (37.64%), Postives = 143/271 (52.77%), Query Frame = 0
Query: 1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKL---GNSPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLD--PTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLL 266
M+ DL G+R LVTGG+ S +G A A A DA V ++GR + +L G+S + +L E M + I+ L G LD+L+ SGG + LD D ++ + + V L L AA L +++G ++V +SS A+ VP + + +AKAA + L + LAF+ G RVN I+PA I+T D MA R D A A H MGR+G P E A ++FLAS A+SF TG + VDGG L WFN+ LL
Sbjct: 8 MLPDLEGKRVLVTGGS--SGIGKAAAFA-FDANLCHVALLGRRLERLDAVAKQLKHGVSIV-ADLTKEEDMKRAFKETIEKLGG-LDILVNSGG------VDLDNMSNDETAFINDFKLHVTGNLTLIRAAEEELIKNKG--AIVNISSGAAVVPRKEMHSYGVAKAALDKLTKDLAFEFAPKGVRVNSIVPAVINTEGFDEMAERVGVPKEDIMAKLAPKHVMGRVGEPWECAAPIVFLASNAASFITGVNLLVDGGATLGYWFNQTPLL 265
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|545362852|ref|XP_005646626.1| (NAD(P)-binding protein [Coccomyxa subellipsoidea C-169] >gi|384248598|gb|EIE22082.1| NAD(P)-binding protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 130.568 bits (327), Expect = 7.308e-33 Identity = 94/269 (34.94%), Postives = 141/269 (52.42%), Query Frame = 0
Query: 1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGN--SPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTA-PFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLL 266
++ DL G+R LVTGG+ + +G A A A DA V V+GR + +L S L + +L E M + + I+ L G LD+L+ GG E G A++ + V L L AA L +++G ++V ++S+ + +P + +AKAAQ+ + + LAF+ G RVN +LPA I T D ++ ++ D A A H M R+G P+EVA ++FLAS A+SF TGA + +DGG L WFNR L
Sbjct: 8 IIPDLKGKRVLVTGGS--AGIGRATAIA-FDANQCAVAVLGRRLERLDAVASQLKHGVSIVADLTKEEDMKRAIKETIEKLGG-LDILVNCGGAASDEMWG---GGEAAFIAALKLHVTGNLTLIRAAEEELVKNKG--AIVNIASVVALIPQKGAMFAYGVAKAAQDKMTKDLAFEFAPKGVRVNSVLPATIDTEVFDTVSEKQGVPRADLLAAFAPGHAMNRVGQPEEVAAPIVFLASNAASFITGASLLIDGGATLGYWFNRNSFL 267
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|1085041180|gb|OGS44312.1| (hypothetical protein A3K76_06870 [Euryarchaeota archaeon RBG_13_57_23]) HSP 1 Score: 117.087 bits (292), Expect = 6.535e-28 Identity = 90/258 (34.88%), Postives = 136/258 (52.71%), Query Frame = 0
Query: 3 LDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGNSPLPGLSCLEGNLKNPETMGALLIDAIKLLD------GRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGL 254
+ L G+ L+TGGT +G+A A A L GA +V + GR+ AK G+ + LS L G ++ + + DA K++D GR+D+L + G Y E L D T+ +L+ D+ + L+T A PY+ + G S++ SS A V + +K A + + +A + + RVN + P I T L A + + +Y E HP+GR+G P+EVA+AVLFLAS +SF TGA + VDGGL
Sbjct: 1 MKLKGKVALITGGT--EGMGFATAEAFLREGA-KVAITGRSKAK-GSKAIAKLSKL-GKVEFVQGDVSKAKDAKKMVDTTVRKFGRIDILFNNAGI-YMEKLAEDTTEEEWDKLI-DINLKGTFLVTKYAIPYMKKQRSG-SIINNSSDAGLVGNRRCPAYCASKGAITIMTKAMALDYAKYNIRVNSVNPGTIDTPML-AYEAEASDDIEEYLRRANEEHPIGRVGRPEEVANAVLFLASDEASFVTGAALSVDGGL 249 The following BLAST results are available for this feature:
BLAST of EWM25112.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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