EWM25112.1, cds5525 (CDS) Nannochloropsis gaditana

Overview
NameEWM25112.1
Unique Namecds5525
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:237320..238147 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25112.1
Productshort chain dehydrogenase
Orig transcript idgnl|cribi|Naga_100016g70.2921.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:237320..238147 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR002347Glc/ribitol_DH
Homology
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|585106750|gb|EWM25112.1| (short chain dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 554.288 bits (1427), Expect = 0.000e+0
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0
Query:    1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGNSPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLLAEYVGGAKA 275
            MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGNSPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLLAEYVGGAKA
Sbjct:    1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGNSPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLLAEYVGGAKA 275          
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|1072230715|gb|OEU15448.1| (NAD(P)-binding protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 244.202 bits (622), Expect = 1.341e-77
Identity = 126/215 (58.60%), Postives = 164/215 (76.28%), Query Frame = 0
Query:   60 GNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQS--EGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLLAEYVGG 272
            G+LK PETM A ++D      G +D+L+ SGGNGYSEYLGLD  D  SYR+M DVAVLSP+ L  AA P+LS+S  + GG+VV+V S++++V WP+TAP N A A++N + +TLAFK+R D  RVNG+    IHTGALDVMA +KN+SV  YAALRA + P+GR GTP++VA+AV++LASPAS FTTG L+ VDGGL LS+W+N+  +L EY GG
Sbjct:   16 GDLKKPETM-AEVVDKANTAMGGIDILVCSGGNGYSEYLGLDVKDPESYRMMQDVAVLSPMFLAEAAFPFLSKSTNKNGGTVVVVGSVSANVAWPNTAPHNFAMASKNTMTQTLAFKYRNDNIRVNGVQAGVIHTGALDVMAVKKNRSVESYAALRASAQPLGRCGTPEDVANAVVYLASPASGFTTGELLRVDGGLHLSNWWNQQTMLNEYKGG 229          
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|971515328|dbj|GAQ82860.1| (3-oxoacyl-(acyl carrier protein) reductase [Klebsormidium nitens])

HSP 1 Score: 213.001 bits (541), Expect = 6.532e-65
Identity = 124/262 (47.33%), Postives = 169/262 (64.50%), Query Frame = 0
Query:    8 RRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVA--KLGNSPLPGLS-CLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLL 266
            +R LVTGG+  S VG+A A A L A  A V ++ RN    K     LPG S  +  +L     + A + DA++++ G LDVLI +G NG SEYLG    +  S+  ++ + V S + L  AA P L +S G  ++V VSS A+  PWP T P+N+AKAA NALI +LA  H + G RVNG+LPACIHT  LD  A +K  S  +YA+ RA SHP+GR+GT ++VA A+LFLASPA++F TG L+ VDGGL L++WFN  +++
Sbjct:   13 KRVLVTGGS--SGVGFATAQA-LSASGAVVTLLARNEEPLKAACEELPGTSHYVVADLTEVAQLKAAVADAVQVMGG-LDVLIANGANGGSEYLGQPAWEPESFTSLHQIHVNSLVTLAQAALPELIKSRG--NIVSVSSAAAETPWPQTTPYNVAKAALNALIHSLAIAHAKHGVRVNGVLPACIHTPHLDKAAEKKGVSAEEYASARARSHPLGRVGTAKDVAGAILFLASPAAAFVTGELLRVDGGLSLTNWFNTQEMM 268          
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|545371517|ref|XP_005650312.1| (putative alcohol dehydrogenase [Coccomyxa subellipsoidea C-169] >gi|384252292|gb|EIE25768.1| putative alcohol dehydrogenase [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 149.443 bits (376), Expect = 3.998e-40
Identity = 100/264 (37.88%), Postives = 148/264 (56.06%), Query Frame = 0
Query:    1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGN--SPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNR 262
            ++ DL G+R LVTGG+  + +G A A+A  DA    V V+GR + +L      L     +  +L   E +   + +AI+ L G LD+L+ +GG+G  E   +D  D A++   + + V S L L  AA   L +++G  +VV +SS+ + +P  +   + +AKAAQ+ L   LAF+    G R+N ILP  I+T A +  A     +  D  A  A  H MGR+G P EVA A++FLAS A+SF TG  +PVDGG  L  WFN+
Sbjct:    8 IIPDLKGKRVLVTGGS--AGIGKAAASA-FDANGCSVAVLGRTLQRLDAVAKQLKHGVPIVADLTKKEDLERAVAEAIEKLGG-LDILVNNGGDGTRE---IDGMDEAAFISFFKLHVTSHLTLIKAAEEELIKNKG--TVVNISSVMATIPAEEDMAYGVAKAAQDKLTRDLAFEFAPKGVRINSILPGVINTEAQEGNAKAMGMAKTDLLAKFAPLHAMGRVGEPHEVAAAIVFLASSAASFITGVNLPVDGGATLGYWFNK 262          
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|545365871|ref|XP_005647870.1| (NAD(P)-binding protein [Coccomyxa subellipsoidea C-169] >gi|384249846|gb|EIE23326.1| NAD(P)-binding protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 145.591 bits (366), Expect = 1.020e-38
Identity = 99/268 (36.94%), Postives = 145/268 (54.10%), Query Frame = 0
Query:    1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLG--NSPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLL 266
            ++ DL G+R L+TGG+  + +G A A    DA    V V+GR + +L   +  L     +  +L   + M   + +AI+ L G LD+L+ SGG    E  G    D A+Y   + + V   L L  AA   L +++G  ++V +SS+A+  P    AP+ +AKAAQ+ L + LAF+    G RVN ILPA I+T A D MA ++     +  A  A  H   R+  P+EVA  ++FLAS A+SF TG  + VDGG  L  WFNR  + 
Sbjct:    8 IIPDLQGKRVLITGGS--AGIGKAAAHQ-FDANGCHVAVLGRRLERLDAVSKQLKHGVSIVADLTKEDDMKRAVKEAIEKLGG-LDILVNSGGVTTEEMNG---NDEAAYIAAFKLHVTGNLTLIRAAEEELIKNKG--AIVNISSVAAIFPAATFAPYGVAKAAQDKLTQDLAFEFAPKGVRVNSILPAAINTEAFDNMAEKQGVPKEEIIAKLAPHHAQNRVAEPEEVAAPIVFLASNAASFITGVNLRVDGGATLGYWFNRASMF 266          
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|545362850|ref|XP_005646625.1| (short-chain dehydrogenase-like protein [Coccomyxa subellipsoidea C-169] >gi|384248597|gb|EIE22081.1| short-chain dehydrogenase-like protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 142.51 bits (358), Expect = 1.890e-37
Identity = 100/269 (37.17%), Postives = 146/269 (54.28%), Query Frame = 0
Query:    1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGN--SPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVP-WPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLL 266
            ++ DL G+R LVTGG+  + +G A A A  DA  + V V+GR + +L    S L     +  +L   E +   + + I+ L G LD+L+ SGG    +       D A++   Y + V   L L  AA   L +++G  +V+ +SS+A+ +P   + + + +AKAAQ+ L + LAF+    G RVN ILPA I T   D MA +K     D  A  A  H M R+G P+E+A  ++FLAS A+SF TG  + VDGG  L  WFNR   L
Sbjct:    8 IIADLKGKRVLVTGGS--AGIGKAAAFA-FDANGSSVAVLGRRLERLEAVASQLKHGVSIVADLTKEEDLKRAIKETIEKLGG-LDILVNSGGAVTDDMFN---GDEAAFISAYKLHVTGNLTLIRAAEEELIKNKG--AVINISSVAAIMPTHANFSAYGVAKAAQDKLTQDLAFEFAPKGVRVNSILPATIDTEVFDTMAEQKGTPKADLLAGMAPWHAMNRVGQPEEIAAPIVFLASDAASFITGVNLRVDGGATLGYWFNRTSFL 267          
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|545365906|ref|XP_005647887.1| (hypothetical protein COCSUDRAFT_41609 [Coccomyxa subellipsoidea C-169] >gi|384249863|gb|EIE23343.1| hypothetical protein COCSUDRAFT_41609 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 138.272 bits (347), Expect = 5.998e-36
Identity = 97/264 (36.74%), Postives = 143/264 (54.17%), Query Frame = 0
Query:    1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLG--NSPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNR 262
            ++ DL G+R L+TGG+  S +G A A +  DA   +V ++GR + +L   +  L     +  +L   E M   + + I+ L G LD+LI SGG       GL   D A++   + + V   L L  AA   L +++G  SVV +SS  + +P      + +AKAAQ+ L   LAF++   G R N +LP  I+T   D MA  K     D  A    +HP+GR+  P+EVA A++FLAS A+SF TG  + VDGG+ L  WFN+
Sbjct:    7 IIPDLKGKRVLITGGS--SGIGKAAAFS-FDANNCKVAILGRRLERLDAVSKQLKHGVSIVADLTKEEDMKRAVKETIEKLGG-LDILINSGG----ASTGLPGDDEAAFIAEFKLHVTGNLTLIKAAEEELIKNKG--SVVNISSAIAIMPAVGFLTYGVAKAAQDKLTRDLAFQYAPKGVRFNSLLPGVINTELYDGMAEAKGVPKADLMAGLGTTHPLGRVAEPEEVAAAIVFLASNAASFITGVNLLVDGGMTLGYWFNK 260          
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|545365897|ref|XP_005647883.1| (NAD(P)-binding protein [Coccomyxa subellipsoidea C-169] >gi|384249859|gb|EIE23339.1| NAD(P)-binding protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 132.494 bits (332), Expect = 1.171e-33
Identity = 102/271 (37.64%), Postives = 143/271 (52.77%), Query Frame = 0
Query:    1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKL---GNSPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLD--PTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLL 266
            M+ DL G+R LVTGG+  S +G A A A  DA    V ++GR + +L         G+S +  +L   E M     + I+ L G LD+L+ SGG      + LD    D  ++   + + V   L L  AA   L +++G  ++V +SS A+ VP  +   + +AKAA + L + LAF+    G RVN I+PA I+T   D MA R      D  A  A  H MGR+G P E A  ++FLAS A+SF TG  + VDGG  L  WFN+  LL
Sbjct:    8 MLPDLEGKRVLVTGGS--SGIGKAAAFA-FDANLCHVALLGRRLERLDAVAKQLKHGVSIV-ADLTKEEDMKRAFKETIEKLGG-LDILVNSGG------VDLDNMSNDETAFINDFKLHVTGNLTLIRAAEEELIKNKG--AIVNISSGAAVVPRKEMHSYGVAKAALDKLTKDLAFEFAPKGVRVNSIVPAVINTEGFDEMAERVGVPKEDIMAKLAPKHVMGRVGEPWECAAPIVFLASNAASFITGVNLLVDGGATLGYWFNQTPLL 265          
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|545362852|ref|XP_005646626.1| (NAD(P)-binding protein [Coccomyxa subellipsoidea C-169] >gi|384248598|gb|EIE22082.1| NAD(P)-binding protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 130.568 bits (327), Expect = 7.308e-33
Identity = 94/269 (34.94%), Postives = 141/269 (52.42%), Query Frame = 0
Query:    1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGN--SPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTA-PFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLL 266
            ++ DL G+R LVTGG+  + +G A A A  DA    V V+GR + +L    S L     +  +L   E M   + + I+ L G LD+L+  GG    E  G      A++     + V   L L  AA   L +++G  ++V ++S+ + +P       + +AKAAQ+ + + LAF+    G RVN +LPA I T   D ++ ++     D  A  A  H M R+G P+EVA  ++FLAS A+SF TGA + +DGG  L  WFNR   L
Sbjct:    8 IIPDLKGKRVLVTGGS--AGIGRATAIA-FDANQCAVAVLGRRLERLDAVASQLKHGVSIVADLTKEEDMKRAIKETIEKLGG-LDILVNCGGAASDEMWG---GGEAAFIAALKLHVTGNLTLIRAAEEELVKNKG--AIVNIASVVALIPQKGAMFAYGVAKAAQDKMTKDLAFEFAPKGVRVNSVLPATIDTEVFDTVSEKQGVPRADLLAAFAPGHAMNRVGQPEEVAAPIVFLASNAASFITGASLLIDGGATLGYWFNRNSFL 267          
BLAST of EWM25112.1 vs. NCBI_GenBank
Match: gi|1085041180|gb|OGS44312.1| (hypothetical protein A3K76_06870 [Euryarchaeota archaeon RBG_13_57_23])

HSP 1 Score: 117.087 bits (292), Expect = 6.535e-28
Identity = 90/258 (34.88%), Postives = 136/258 (52.71%), Query Frame = 0
Query:    3 LDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGNSPLPGLSCLEGNLKNPETMGALLIDAIKLLD------GRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQSEGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGL 254
            + L G+  L+TGGT    +G+A A A L  GA +V + GR+ AK G+  +  LS L G ++  +   +   DA K++D      GR+D+L  + G  Y E L  D T+    +L+ D+ +    L+T  A PY+ +   G S++  SS A  V       +  +K A   + + +A  + +   RVN + P  I T  L    A  +  + +Y     E HP+GR+G P+EVA+AVLFLAS  +SF TGA + VDGGL
Sbjct:    1 MKLKGKVALITGGT--EGMGFATAEAFLREGA-KVAITGRSKAK-GSKAIAKLSKL-GKVEFVQGDVSKAKDAKKMVDTTVRKFGRIDILFNNAGI-YMEKLAEDTTEEEWDKLI-DINLKGTFLVTKYAIPYMKKQRSG-SIINNSSDAGLVGNRRCPAYCASKGAITIMTKAMALDYAKYNIRVNSVNPGTIDTPML-AYEAEASDDIEEYLRRANEEHPIGRVGRPEEVANAVLFLASDEASFVTGAALSVDGGL 249          
The following BLAST results are available for this feature:
BLAST of EWM25112.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106750|gb|EWM25112.1|0.000e+0100.00short chain dehydrogenase [Nannochloropsis gaditan... [more]
gi|1072230715|gb|OEU15448.1|1.341e-7758.60NAD(P)-binding protein [Fragilariopsis cylindrus C... [more]
gi|971515328|dbj|GAQ82860.1|6.532e-6547.333-oxoacyl-(acyl carrier protein) reductase [Klebso... [more]
gi|545371517|ref|XP_005650312.1|3.998e-4037.88putative alcohol dehydrogenase [Coccomyxa subellip... [more]
gi|545365871|ref|XP_005647870.1|1.020e-3836.94NAD(P)-binding protein [Coccomyxa subellipsoidea C... [more]
gi|545362850|ref|XP_005646625.1|1.890e-3737.17short-chain dehydrogenase-like protein [Coccomyxa ... [more]
gi|545365906|ref|XP_005647887.1|5.998e-3636.74hypothetical protein COCSUDRAFT_41609 [Coccomyxa s... [more]
gi|545365897|ref|XP_005647883.1|1.171e-3337.64NAD(P)-binding protein [Coccomyxa subellipsoidea C... [more]
gi|545362852|ref|XP_005646626.1|7.308e-3334.94NAD(P)-binding protein [Coccomyxa subellipsoidea C... [more]
gi|1085041180|gb|OGS44312.1|6.535e-2834.88hypothetical protein A3K76_06870 [Euryarchaeota ar... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5539rna5539Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications