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Properties
| Property Name | Value |
|---|
| Product | short-chain dehydrogenase reductase sdr |
| Orig transcript id | gnl|cribi|Naga_100016g74.2945.mrna |
| Orig protein id | gnl|cribi|Naga_100016g74.2945 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:231645..233844 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5535 ID=rna5535|Name=rna5535|organism=Nannochloropsis gaditana|type=mRNA|length=2793bp
ATGGCTGAAGGAAGTGCGACTGTCAAGGCCGTAGTAAGCGGAGATACGCT
CATTTTACAAGGCCGTTCTACAGGCGGGCCGCCCCCCGAAAGGCAGATGT
CTTTATCTTCACTCATGGCGCCGCGTGTGGCACGAGGCCCGACGGGGATG
GCCCAGGAGGAGCCATGGGGGTGGGCCGCACGGGAGTTCTTGCGCCGCCA
CTGCGTGGGCTTTCAGGTATCTTTTAAGGTCGATTACACCGTGCCTATGT
TAAACAATCGGGAGTTCGGCACCATCACTTTGAATGGAGAAAGTTTAAAT
CGCACAGTGGTGAAGGAGGGGTGGGCCCGTGTGCGCCTTCCTCGAACAGG
AAACGAGAGCGAGGCTAGTCCCGAGTTGGAGGAGCTGGTGCGACTTGAGG
CTGAGGCACTTGCAGAAAAGAAGGGTTTGCATGCCGGAGAAGCAGGAGAA
GGGGCAACTAGGGAAGGAGTTCAGTGGGGCCCGGGCGTCGACACAGAGGC
TATCCTGCAACGCATCAAGGGCAAGCCCACCCGGATGACAATCGAATATG
TACGCGACGGTGGCGCGTTTCGCGCATTGGTTCTAGATAGTCATACTTAT
GTGAATCTCTCCCTAGCCGGGATTACAGCCCCTCGCGTCAATTTCCCTCC
AAAAACAGCCTCTGCGGCTGGAGATGGTGGAGCCGGTGCAACAACAGTCG
CTGCAGGCACAGCGTCCAAGCCCGAGCCTTACGCTTTAGAGTCGAGAAAC
TTTACGGAAACTCGCCTCTTGCATCGAGACGTGGACGTCGTAGTGGGCGG
GGTAGACAAGTATGGGACGCTGTATGGCACAATCTCGCATCCCAAAGGGA
ACATCTCCGTTGAGCTCCTGAAGGCAGGCCTGGCGCGTATTGTGGAATTT
TCTATTGACTTCACGTCGCGTGAAAATATCTTGCAATATCGCTTGGCGGA
ACGACAGGCCAAAGCTGCCCAGCTGAGGATTTGGAAAGGATATGTCCCCC
CGACCGTAACAGGCTCGAAAGAGTTCGTGGGCACCGTGATCGAGGTTGTA
GGTGGAGATTTGCTTGTAGTCAAGGTAGAAACCGGAAAGGAGGCTGGAGA
GGAGCGGAAAATCTCTCTTGCCTCGCTTCGGGCTCCGCGTCAAGGTAACG
TCAAAAAAGGAGACAGGGGGGAACCTTGGGCAGCCGAAGCGAAAGAATTT
CTGCGGGAGAAGATAATTGGAAGGAGCGTGGTAGTAACGGTAGAGTATGA
AAGGGAGATCGCCGTTGGAGAAAGAAAGGAAAAGCGGTCTTATGCCTCGG
TCGTTATTGGTAAGGGAGCTAAAAAAAGGAGTGTGGCGGAGATGCTTGTC
AAGGAGGGGTTGGCTGTTGTGACACGGCACCGAGACGAAGGACGGGCCGA
GAATTATGATGACCTGCTCTTTGCGGAAACGGCGGCTAAAGCGGGGAAAA
AGGGAATGTTTTCGGGAGGACCTGCACCCCTCCCCCCCCGCGTGACTGAT
TTGAGCTTGGACTCTAAAAAGGCTCGCTCTTATCTGCCGCACTTGCAGCG
GGAGGCAGCTGTGCGCGCAGTGGTGGAATACGTTTTTTCGGGATCACGAT
TCAAAGTCTACATACCCTCTGAAAATTGCAGCGTGATGCTGGCATTGACT
TCTCTTCGGACCCCTAACCCTCCTCGTGGAAGTGCCGTGCCCGGAGACAA
GAACGCTCGCGCCGGCGATCCCTTTGGAGAAGATGCCAAGACTCACGCAC
GTCAGCATCTGCACCAGCGCACAATCGAAGTATCCTTTGCGGACATGGAT
AAAAATGGTGTGGCTCTAGGTAGCGTATCGGTCTTAACGGGTGGAGGAGA
ACGTTTGCCTTTCGGCCTCGAACTAGTCAAGCTGGGTTTGGCCAGAGTGG
ATGAAAGGGGAACGACTTGTTTGCCCGCGTCATTTGTCAACGCTCTACAG
GAGGCGCAGGTAGCAGCGAAAGCTGCCAGACGAGGCATATGGTCAGTGCC
GGTGGAGGAGGCGGAGGAAGAGGAGGAAGTGACGGTCGCACAGAGCGAGG
AGCCGGTGGAGGTCAGTGTCAGTGAGATCGTCGATGGAGTCCACTTCTAC
TACCAGGAGGCCAGCAATACGGAAGTTTTGGCGAAAGTTGGTGAGAAAAT
GAAGGCACTGGGAGCTGAAGGTAGGAGTGAAAATGCAATATCCTTTGAAC
CTCGTAAGGGCAACATCGTGGCTGCGCTTTTCGATGATGGAAGCGGACCC
TTGTGGTACCGTGCACGTGTGGAAGACAAATTATCCATGAGTAATGGAGG
GGGTTTTATGGTCTCGTTCATTGACTACGGAAACAAGGCTATAGTGGGAA
GGTCGCAAGTACGTACCCTCGACGCTTCTTTCACAGCCATGCCTGCGCAG
GCAAAGAGAGCGAAGCTAGCCTTCCTCCGGGCGCCAGGTCTCAAAGATGA
CTTCGGGCATGAAGCGGCCGTGGCCTTCAGTCGCTTGGCCTATGGGAAGG
TACTCCGGGCTCGAGTGTTCGGACTGGAAAGGGGAACGCTCTTGGTTTCC
TTGCAGGAGAAAGGGGAGGACTCCTCTCCCGCAACTTCAATGAAAACATT
CAATCAGTTGATGGTAGAGGAGGGACTAGCACGACTCTCCAAGCAAGCAG
ATGGAGTAATTTCAAAACTTGGCAAATCTTCGGCGGTAAATCTGGTGGAA
GAAATGAAAGAGGCGCAAGAACTTGCGCGGAGGGGCCGGATCGGGATGTG
GAGGTACGGGGACGTGGCAGATTCTGATGATGAAGACGCGTAG back to topprotein sequence of rna5535 >rna5535-protein ID=rna5535-protein|Name=rna5535|organism=Nannochloropsis gaditana|type=polypeptide|length=383bp
MAPNDTKTCSFHFLNGWHPASFRKQDNALLYEMTSPPAFLRAPAARTMAS
GGVGSKEKTVKPLGWIWFTGIVLGIAACLPYVVEFMCSKAYATHRHGVVL
VTDATSPVGKATCLALMEDGYAVYGGVRSASDERVVTELDSRKLLPVVLD
MQNPGTVEAAVAKVKSELQGRPFTALVNTIDAGGAISPIESQDLSSLKRL
FDINTFGTLAVVQAFLPLIREHGSRLVLMSSLCAHLTSPLFGGLCASKAA
LESLADALRRELAHYRISVSSIEPAVAFPEMPEGGKDTGAKSAAAVELDS
KVYAHLFADDKARALVSPSANGGEGRRSGTAVAEAVAQVVIHAVSSTHPK
LRYPAGYIGHLPASVAAFISWGLPGRMQDLLLA back to topmRNA from alignment at CM002466.1:231645..233844+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5535 ID=rna5535|Name=rna5535|organism=Nannochloropsis gaditana|type=mRNA|length=2200bp|location=Sequence derived from alignment at CM002466.1:231645..233844+ (Nannochloropsis gaditana)
CTCAGCCGCTCGCGTTGATCCCGGCGATGCATTTAAGGTCGAAGTCCCAG
CATGCCAGGAAACACAAACCACGAAGTGAGGGTGCACCACAGGGATCATT
CGGAAGAGTGATTGATATAGAGGGCGATTTGCTACATCGTGCAATAAGTG
GGACCTTTTCCTGCAGTCCGCTCCATCGTTTCGTGCTTTTGGGCTCAGCC
TCACGGTCACTTAAACGTTCGTCTCTTGGGCCCACAAGTGCGCCACTGTT
CCTGAATCATGGCGCCAAATGATACGAAGACATGCTCATTTCATTTTCTG
AATGGATGGCATCCTGCGTCATTTAGGAAGCAAGATAACGCCTTACTTTA
TGAAATGACTTctccccctgctttcctcagGGCTCCTGCAGCAAGAACCA
TGGCGAGTGGCGGAGTCGGATCCAAAGAGAAGACCGTAAAGCCTCTAGGC
TGGATATGGTTCACGGGGATTGTGTTGGGCATAGCAGCGTGCCTTCCATA
CGTGGTCGAATTTATGTGCTCGAAGGCATACGCGACGCATCGGCACGGTG
TGGTGTTGGTAACGGATGCTACGTCGCCCGTGGGAAAAGCTACATGTCTT
GCTTTAATGGAAGATGGTTATGCGGTACGATTGAGGGAATGGTCACAGAG
AGATGTAAGGGTTGGATAATGGATCACTGCCGGGAAGGATTTTATGTGCA
ATGCAATCCTTGGCAGGATATTTCTCACTCTCAGGCTCTCGATGGGTTGT
TGGGACGACTACATTGAGGTGAATATGGAAAAGAGTAGGCTCATTCAGAA
CTCACGGCCAGGTATACGGCGGAGTACGGAGTGCGTCAGACGAGCGCGTG
GTCACAGAGCTCGACTCGAGGAAGCTTCTGCCCGTGGTGCTTGACATGCA
GAACCCGGGCACCGTGGAAGCCGCGGTCGCCAAGGTAGGAGGGCTACTCG
TGTGGAACGCCTATGTACTCAGCTTTACTTGGCTCATGTCCTGAGACTGT
TTCTGCGTCGGTAATTGGtactctcttcctcttctctctacTCACTACCT
TGCTCGCGACTTTCCCACCGGTGCAGGTCAAGTCGGAGCTTCAGGGACGA
CCGTTTACTGCACTTGTCAATACCATAGACGCTGGGGGCGCTATCAGCCC
GATTGAGAGCCAAGACTTGTCATCTTTAAAGCGCCTTTTTGATATCAACA
CCTTCGGCACGCTAGCGGTGGTgcaagctttcctccctctcattcgCGAG
CATGGCAGCCGTCTCGTTCTCATGTCCTCACTCTGTGCTCACCTGACATC
GCCCTTATTCGGAGGCCTGTGTGCGAGCAAAGCTGCCCTCGAGTCCTTGG
CGGACGCCCTCAGAAGAGAACTCGCCCACTACCGAATCTCGGTCTCGTCC
ATCGAACCGGCCGTGGCTTTCCCAGAGAtgcccgagggagggaaggacac
tGGGGCCAAATCGGCAGCAGCGGTAGAGCTAGACAGTAAAGTCTACGCCC
ACTTGTTTGCTGACGACAAAGCTCGGGCCCTAGTCTCTCCCAGTGccaat
ggaggagagggaagacgctCTGGGACAGCTGTGGCGGAAGCTGTCGCGCA
GGTCGTGATTCATGCAGTGTCAAGCACACACCCGAAGCTCCGTTATCCTG
CCGGATACATAGGCCACCTTCCCGCGAGTGTGGCCGCCTTTATCTCGTGG
GGCCTACCAGGGCGCATGCAAGATCTGCTCTTGGCATGAGGAAcctgagg
agaaggggaggctcgAGCGAGAGAAACAACGAGGGCGGTTCAGCCGAATG
AGACAGACAGAACAtccgggggaagagggaatgggtacacaaggagaagg
gaaaacgtggtgagggaaaggccaGGTCAGCTTCAGCTTGAAACCACCAC
TTGCTTGTGCTATGAGTTGTGTCACGTGTTTCTTTTTGCATGAAGGAGGT
TTTATACAAACTGTTTAGGCTGAAAATGAGAGTTTAGCCTAGCGACGGGA
AGCAGAAAATAGATAACAGAACAATCAATGTGACATCGTCGCCCACGTTG
GGAAAATGTCGGAAATGCAAGCACTATGCTTACTGCTTACAATGAGACGC
TTCCTTCCATATCGAACTCCTTCTTCTGTCAATTGCTGCTTGCCTAGAAG
CCCTAGAGTGGCAAAAGGCGCGATTCAAGCCAAAATGGTCTACCCTCCCC
back to topCoding sequence (CDS) from alignment at CM002466.1:231645..233844+ >rna5535 ID=rna5535|Name=rna5535|organism=Nannochloropsis gaditana|type=CDS|length=3456bp|location=Sequence derived from alignment at CM002466.1:231645..233844+ (Nannochloropsis gaditana)
ATGGCGCCAAATGATACGAAGACATGCTCATTTCATTTTCTGAATGGATG
GCATCCTGCGTCATTTAGGAAGCAAGATAACGCCTTACTTTATGAAATGA
CTTctccccctgctttcctcagGGCTCCTGCAGCAAGAACCATGGCGAGT
GGCGGAGTCGGATCCAAAGAGAAGACCGTAAAGCCTCTAGGCTGGATATG
GTTCACGGGGATTGTGTTGGGCATAGCAGCGTGCCTTCCATACGTGGTCG
AATTTATGTGCTCGAAGGCATACGCGACGCATCGGCACGGTGTGGTGTTG
GTAACGGATGCTACGTCGCCCGTGGGAAAAGCTACATGTCTTGCTTTAAT
GGAAGATGGTTATGCGGTATACGGCGGAGTACGGAGTGCGTCAGACGAGC
GCGTGGTCACAGAGCTCGACTCGAGGAAGCTTCTGCCCGTGGTGCTTGAC
ATGCAGAACCCGGGCACCGTGGAAGCCGCGGTCGCCAAGGTCAAGTCGGA
GCTTCAGGGACGACCGTTTACTGCACTTGTCAATACCATAGACGCTGGGG
GCGCTATCAGCCCGATTGAGAGCCAAGACTTGTCATCTTTAAAGCGCCTT
TTTGATATCAACACCTTCGGCACGCTAGCGGTGGTgcaagctttcctccc
tctcattcgCGAGCATGGCAGCCGTCTCGTTCTCATGTCCTCACTCTGTG
CTCACCTGACATCGCCCTTATTCGGAGGCCTGTGTGCGAGCAAAGCTGCC
CTCGAGTCCTTGGCGGACGCCCTCAGAAGAGAACTCGCCCACTACCGAAT
CTCGGTCTCGTCCATCGAACCGGCCGTGGCTTTCCCAGAGAtgcccgagg
gagggaaggacactGGGGCCAAATCGGCAGCAGCGGTAGAGCTAGACAGT
AAAGTCTACGCCCACTTGTTTGCTGACGACAAAGCTCGGGCCCTAGTCTC
TCCCAGTGccaatggaggagagggaagacgctCTGGGACAGCTGTGGCGG
AAGCTGTCGCGCAGGTCGTGATTCATGCAGTGTCAAGCACACACCCGAAG
CTCCGTTATCCTGCCGGATACATAGGCCACCTTCCCGCGAGTGTGGCCGC
CTTTATCTCGTGGGGCCTACCAGGGCGCATGCAAGATCTGCTCTTGGCAT
GAATGGCGCCAAATGATACGAAGACATGCTCATTTCATTTTCTGAATGGA
TGGCATCCTGCGTCATTTAGGAAGCAAGATAACGCCTTACTTTATGAAAT
GACTTctccccctgctttcctcagGGCTCCTGCAGCAAGAACCATGGCGA
GTGGCGGAGTCGGATCCAAAGAGAAGACCGTAAAGCCTCTAGGCTGGATA
TGGTTCACGGGGATTGTGTTGGGCATAGCAGCGTGCCTTCCATACGTGGT
CGAATTTATGTGCTCGAAGGCATACGCGACGCATCGGCACGGTGTGGTGT
TGGTAACGGATGCTACGTCGCCCGTGGGAAAAGCTACATGTCTTGCTTTA
ATGGAAGATGGTTATGCGGTATACGGCGGAGTACGGAGTGCGTCAGACGA
GCGCGTGGTCACAGAGCTCGACTCGAGGAAGCTTCTGCCCGTGGTGCTTG
ACATGCAGAACCCGGGCACCGTGGAAGCCGCGGTCGCCAAGGTCAAGTCG
GAGCTTCAGGGACGACCGTTTACTGCACTTGTCAATACCATAGACGCTGG
GGGCGCTATCAGCCCGATTGAGAGCCAAGACTTGTCATCTTTAAAGCGCC
TTTTTGATATCAACACCTTCGGCACGCTAGCGGTGGTgcaagctttcctc
cctctcattcgCGAGCATGGCAGCCGTCTCGTTCTCATGTCCTCACTCTG
TGCTCACCTGACATCGCCCTTATTCGGAGGCCTGTGTGCGAGCAAAGCTG
CCCTCGAGTCCTTGGCGGACGCCCTCAGAAGAGAACTCGCCCACTACCGA
ATCTCGGTCTCGTCCATCGAACCGGCCGTGGCTTTCCCAGAGAtgcccga
gggagggaaggacactGGGGCCAAATCGGCAGCAGCGGTAGAGCTAGACA
GTAAAGTCTACGCCCACTTGTTTGCTGACGACAAAGCTCGGGCCCTAGTC
TCTCCCAGTGccaatggaggagagggaagacgctCTGGGACAGCTGTGGC
GGAAGCTGTCGCGCAGGTCGTGATTCATGCAGTGTCAAGCACACACCCGA
AGCTCCGTTATCCTGCCGGATACATAGGCCACCTTCCCGCGAGTGTGGCC
GCCTTTATCTCGTGGGGCCTACCAGGGCGCATGCAAGATCTGCTCTTGGC
ATGAATGGCGCCAAATGATACGAAGACATGCTCATTTCATTTTCTGAATG
GATGGCATCCTGCGTCATTTAGGAAGCAAGATAACGCCTTACTTTATGAA
ATGACTTctccccctgctttcctcagGGCTCCTGCAGCAAGAACCATGGC
GAGTGGCGGAGTCGGATCCAAAGAGAAGACCGTAAAGCCTCTAGGCTGGA
TATGGTTCACGGGGATTGTGTTGGGCATAGCAGCGTGCCTTCCATACGTG
GTCGAATTTATGTGCTCGAAGGCATACGCGACGCATCGGCACGGTGTGGT
GTTGGTAACGGATGCTACGTCGCCCGTGGGAAAAGCTACATGTCTTGCTT
TAATGGAAGATGGTTATGCGGTATACGGCGGAGTACGGAGTGCGTCAGAC
GAGCGCGTGGTCACAGAGCTCGACTCGAGGAAGCTTCTGCCCGTGGTGCT
TGACATGCAGAACCCGGGCACCGTGGAAGCCGCGGTCGCCAAGGTCAAGT
CGGAGCTTCAGGGACGACCGTTTACTGCACTTGTCAATACCATAGACGCT
GGGGGCGCTATCAGCCCGATTGAGAGCCAAGACTTGTCATCTTTAAAGCG
CCTTTTTGATATCAACACCTTCGGCACGCTAGCGGTGGTgcaagctttcc
tccctctcattcgCGAGCATGGCAGCCGTCTCGTTCTCATGTCCTCACTC
TGTGCTCACCTGACATCGCCCTTATTCGGAGGCCTGTGTGCGAGCAAAGC
TGCCCTCGAGTCCTTGGCGGACGCCCTCAGAAGAGAACTCGCCCACTACC
GAATCTCGGTCTCGTCCATCGAACCGGCCGTGGCTTTCCCAGAGAtgccc
gagggagggaaggacactGGGGCCAAATCGGCAGCAGCGGTAGAGCTAGA
CAGTAAAGTCTACGCCCACTTGTTTGCTGACGACAAAGCTCGGGCCCTAG
TCTCTCCCAGTGccaatggaggagagggaagacgctCTGGGACAGCTGTG
GCGGAAGCTGTCGCGCAGGTCGTGATTCATGCAGTGTCAAGCACACACCC
GAAGCTCCGTTATCCTGCCGGATACATAGGCCACCTTCCCGCGAGTGTGG
CCGCCTTTATCTCGTGGGGCCTACCAGGGCGCATGCAAGATCTGCTCTTG
GCATGA back to top
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