rna5528, rna5528 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5528
Unique Name	rna5528
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2352
Alignment location	CM002466.1:205886..208161 -

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrial substrate carrier family protein
Orig transcript id	gnl\|cribi\|Naga_100016g81.2909.mrna
Orig protein id	gnl\|cribi\|Naga_100016g81.2909
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:205886..208161 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g81	gene5341	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5528	rna5528-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25100.1	cds5514	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:205886..208161-
coding sequence from alignment at CM002466.1:205886..208161-

mRNA sequence

>rna5528 ID=rna5528|Name=rna5528|organism=Nannochloropsis gaditana|type=mRNA|length=2352bp
GGTCCAACGGCTCGCTGCTGATGCGCGTCCCTCTCATCCTGTATTCCGTA
CCTCAGACTCTAATTAGGGGTACCGGCGGGCAATGATGCCAATCTTACCT
TGAAATTGGTTATATTTCCATATTTTAGTCGCTTGACATTCTTCCGTCCC
CGCGCTCGCACCTCATTGCTCATGCGAGTTCGAGATTATGTCGTTATTGA
CTGCCAAAACTAAAATTTGTATGGCGACCGAACAATTTCCACAATGTAGT
GCAGGTGCTGTCGCCAAGGACAGCCGCTGCCAGCCGATACCTCTAGCCAG
GCTCCCCTATCCCGTTGGATGGCGGTTAGTCTGTGATTTTTTGGGAACTC
ATGATATAATCCACTTGGCACAAACCACTAGTGAACATTTAAATATGGGG
TTTTCCATGATCCAGCACCTCACCCTCCGGATTCGGGAAGAAGACGAGAA
TCTGGGCAGGAAAGGCGAGGGCTGCCAGAGCATGTGTACCTCGCGTGCCG
TGGGCTCTCACCTTGCCCGCTTTCTCTCCCGCTGTGTCGAACTTGACTCT
CTTTCATGTCGATCCTTGACGTTTTCAAAGGGAGAATGTCTGGGTGATGC
CATGCGTCAACTTCGGATCAGATGTCTGCACTCCCCGTCCCCCTTGTCTA
GAGTGCGGGTCCTTGCTCTGTCCCACGCGGGCCTCCGTGTTGAGGGCTTG
CTGCACTTGCTGCCCTCCTTGCATCTTTTCCCCGCGCTTGAAGAGTTGCT
GCTAGATGGAAACGCATTGGGCAACCAGGGTGTGCGAGCCTTCTCTAGGA
GTCTACGGGGGCTGGGGTGGAAAGACAGTGATGGAGGCCGTGTCTCGGAG
CGTTTCAGCTCAATGGGAACCGGTCAGTGCCTCAAGGTCTTGTCTCTGGC
ATCAAATGGAATAGGCACCGCGGGGGCGAATGAACTGGCCCTGTTGCTGT
CAGGGGCGGGCAACGGCGACGTCCGTGCTTGGAATGGCGGAGACGCGCAC
CCCGCCTCGGCCGTTCTCGAGACGAGCCAGCACCAGTCATTGTCGCAGCG
CCATCCCTGTGCCTTGCTGGAGGCGCTCTGCTTGGACGGAAACGTCTTGG
GCCCCAGCGGGACAGCCCATCTCGCCCGGGCTTTCAGGCGCGGGGCCTGC
ACCCAGCTCCGCCAGCTGCATTTGCGGAACAACGACGTGCGAGGGCAAGG
GCTGCAGGATCTCCTGAGTGCTTTTGCGTCCGGCGCCTGCCCACATTTGA
CCGTGCTAAGCCTGGAAAGCAACATGTTCGGGACGGTGGGGGCGCGATGG
CTCGCTCACGCCCTCTCTTCCGGCGCCTGTGCCGACCTGCGGGTCCTGAA
TTTGAATTTCACCTTCATCGGGGAGCACGGCATGCGCGCCTTGGCAGAGG
CTTTTGGGCAGGGTGCCTGTCGGCGCATCCACACTCTGTATCTCAAATCG
GCGTGCTTGCGGCGGGCCAGCACGTTAGACCATCTGCAGGCGTCCACGAG
GGCGGGGGAGAGGGAGGGGCGGGGGGAAAGGGAGCGGGGGTACCCGGTCC
TGGTCTTGTGAGAGCCCATGCGGACGCTGCTCTCTGTCATGCGAGGAAAA
CGATGGGATGTCGGCAGGAGATGAGGACTTTAATGGGTACAGGGCTGACA
TTTCCGGATGATAGATATTCCTTGCTGTGGGATAGCGCGGATGCTGGTGG
AAAGGCAGGGTATTTGCACACGTAAAGGGTGGATGTTTATATATATGTAG
ATGTGTTGTAGAGTTCGTTGCGCAGTTGATCTGCAGGAGATTCTGGATCG
TGGGATCGTTACAGGACTCCACTTGAAGGAGGAGAGACCACCCGCCTGGT
TCCCCGCCTTGTCCAAACGAATCAGGCGGGTGCCACGTCGCAGTGCAGGG
ATGCGGAGCATATGCCCTGTCGGAGGATTGAGAAGACTGCTCCAGCAGTG
ACCTGATGGGCAGCCGTACAATCCGACTTGTCTAAATGGTTCCCATCAGG
CATGCTATCTTCTGTCGACATGTGGGCGAGGCGAGTCGAAAGTAAAGGTG
AGAGGAAAGAGAGCAGGCGAGCCTGGTTAATTTTTTTAAAAAAGCAGATC
CGATCGCGCCAGTGCAACCAAAAGAGAATCGCAGTAAACCTTAATGAGAC
CACCACTAAAAATAGATCGCTTCCACGGCGAAACGCGCGAAATAATCATT
GTGAGAGATATGTGAGCCTGGCAACCTAGACACACGCCTTTTGATACTGT
CGACACGATGCATTTGTTTATTTGCTTATATCACCCGATCCAAAGTCCAG
TCCTAGTCTTGACATTACGTGCACTAACCCCATGCACCCGCCATCAGAAA
CA

protein sequence of rna5528

>rna5528-protein ID=rna5528-protein|Name=rna5528|organism=Nannochloropsis gaditana|type=polypeptide|length=259bp
MQAAAAGQAGGTVLASGVAKMSALELLRSTIKHEGVLALYRGASSRVLGS
ALGNSVLFGANGAFLQAFQANTAQPLSGAFVLASAFTGVAEAAIWTPMDL
LKTRCQVEYGKKVDVTPLRVARQLFQDRGVRALYAGGGPTLLREIVGNAI
YFTVYQVIKQALMQFRGLREGDAATFVVAGGCAGTAYWFSIFPLDTVKSI
VQAQEAHITGMQVARDLYAKGGVAAFYKGVGPAMLRAFPACAATWTTFEY
SLMALKRLE

mRNA from alignment at CM002466.1:205886..208161-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5528 ID=rna5528|Name=rna5528|organism=Nannochloropsis gaditana|type=mRNA|length=2276bp|location=Sequence derived from alignment at CM002466.1:205886..208161- (Nannochloropsis gaditana)
CCCAGCACACGTCCCGAACCCACTTGCAAGAACAGGTATTGGAGCGGGCA
ACAAATGGAAAGACAAGAAACTTCAAGTGAAGGCCAGTCGCTGTACAAAA
AGATTGGTGCTTTCTGCGCAGGAGCTCAGAGACAAGATGTTCCCAGGGAG
TGAGAGATAATGAACCGTGTTTCCCTCTTCTTCAGTGAGAATTTTTAGCC
CCACACACTATGCTACTCCTGCACAAGCTATGAGTTGGGACATTAAAGCC
GAAACTATGTCTCGCTGCGAGTCATCACTCCACGTGTCTCCTCGATGCCG
GATTTTACCAGGCACGATGCCCTGTTTCCCCCGTCATGGCTCACTTCCGC
GATCCTCCCCCCGTATCTTGGCTCCCAGCCCCAATGGCCGCGCGGTTTTT
GCCACAAGTAGCCACGATAAATCTACTCCTATTCCTCTCACAAGAAAGCT
GACTCACTCTGGACATGACGCTGCAAGTGCATTCTGGTCTGTTGCGAAGA
AATTTATCGCGGGCACGGCTGCAGGTAAGCAACCAACAATAAAATGTCAC
ATTTAAAGCATCTTCCACCTGGAGCTGTAATGTAGTCTCTGAATTGTTTG
TGCCCTGTGGTAAGGAACGCGCCAGGATATCTTATTTGAGCCATGACCGT
GTTGGCTTGGAACTTGTGTCGCAATACCCTACAAATGTGAGGGGTCAGGG
CGGGCGGTTCTTTCGAACAAGATGGCGCGACTCAAGAGATGGGCGGTAGC
AAATACATTTAATTGATATATAGCTATAGGAGCTAGGTTAATGATAGTGT
CATAACTCTCCCAGGCGTGGCAGAGTGCTTCGTCGGCCATCCCCTCGACA
CCCTGAAGGTTCGTATGCAAGCTGCGGCCGCAGGACAAGCGGGAGGTACA
GTCCTGGCATCAGGCGTGGCTAAAATGAGCGCACTGGAGCTGTTGCGAAG
CACAATCAAACACGAGGGCGTCCTGGCACTTTATCGGGGGGCTTCTTCAC
GTGTACTCGGCTCCGCGCTAGGCAACTCGGTGTTATTCGGTGCGAATGGC
GCCTTCCTTCAAGCCTTTCAAGCAAATACTGCCCAGCCACTGAGTGGAGC
CTTTGTCCTCGCTTCGGCCTTCACAGGGGTGGCAGAGGCAGCAATTTGGA
CGCCAATGGGTAGGTGGCAGGTTAAATGGTCTGAGGGCCGTCCACATGAT
ATGTCTGGACCGAAGATTTTGCGCAGCGATGGCCGCATCAAATGCATTTC
TAATTGCACATGGGAGGAATAATGTCTCTTGTGTCTGGGATGTAGCGTTT
CGGTTTCTAAACTCCGGTGTCTCTCTTTTTCAGCTGCTTCATTCCCGGCA
AACGATCTCAGACAAGATTCCTCCCTTTCCTCTCCCTCCTGCCCTCCCAC
GCGATGACATTATCACATAGATCTGCTTAAGACTCGCTGCCAAGTAGAGT
ACGGCAAAAAGGTGGACGTGACGCCTCTTCGAGTGGCGCGGCAACTCTTC
CAGGACCGGGGCGTCCGGGCCCTGTACGCGGGCGGAGGTCCCACACTGCT
GAGGGAAATTGTCGGGAACGCAATCTACTTCACGGTATATCAGGTGATCA
AGCAGGCTTTGATGCAATTTCGGGGCCTGCGGGAGGGTGACGCCGCGACC
TTCGTCGTGGCAGGCGGGTGCGCAGGGACGGCCTACTGGTTCTCTATCTT
CCCCTTGGACACGGTCAAGTCGATCGTCCAGGCACAAGAGGCGCACATCA
CGGGAATGCAGGTAGCTCGGGACCTTTATGCCAAAGGAGGCGTGGCTGCG
TTCTACAAAGGGGTGGGGCCGGCCATGCTTCGAGCGTTCCCTGCCTGTGC
AGCCACGTGGACGACCTTCGAGTATTCCTTGATGGCATTGAAGCGACTCG
AGTAGCATTGCTTGTAGATTCATGTGAAGGACAAGAACGTGTAAGGCAAT
GGGAAAGGTATCGCACATGTTGGTAGCCAGTTGCGAGCAGATGAGCTTTC
TACAGTGAGAATCTCCCGAGTGACACCATAATCTGGCTACACGACGTTGT
AAGGGCGGCGCGAGGAAGAGGAAGGACGTCGAAGATGCGTACATGTTATG
TGAAAGTCTCGAAGCACTCGAGATTGGCGAATGCCTTAAGTATCGCCTTG
GCCCTAACGAGTTAAATGAAGGACCTCTGTTTGACTTTTACTTTCGAAGG
TGAGGATTAGGGTCATGGTTAATACACAGTAACCTACCTTTCATATAATC
ACAGGAAAATCAAGCGGGATAATTTG

Coding sequence (CDS) from alignment at CM002466.1:205886..208161-

>rna5528 ID=rna5528|Name=rna5528|organism=Nannochloropsis gaditana|type=CDS|length=1560bp|location=Sequence derived from alignment at CM002466.1:205886..208161- (Nannochloropsis gaditana)
ATCTGCTTAAGACTCGCTGCCAAGTAGAGTACGGCAAAAAGGTGGACGTG
ACGCCTCTTCGAGTGGCGCGGCAACTCTTCCAGGACCGGGGCGTCCGGGC
CCTGTACGCGGGCGGAGGTCCCACACTGCTGAGGGAAATTGTCGGGAACG
CAATCTACTTCACGGTATATCAGGTGATCAAGCAGGCTTTGATGCAATTT
CGGGGCCTGCGGGAGGGTGACGCCGCGACCTTCGTCGTGGCAGGCGGGTG
CGCAGGGACGGCCTACTGGTTCTCTATCTTCCCCTTGGACACGGTCAAGT
CGATCGTCCAGGCACAAGAGGCGCACATCACGGGAATGCAGGTAGCTCGG
GACCTTTATGCCAAAGGAGGCGTGGCTGCGTTCTACAAAGGGGTGGGGCC
GGCCATGCTTCGAGCGTTCCCTGCCTGTGCAGCCACGTGGACGACCTTCG
AGTATTCCTTGATGGCATTGAAGCGACTCGAGTAGATGCAAGCTGCGGCC
GCAGGACAAGCGGGAGGTACAGTCCTGGCATCAGGCGTGGCTAAAATGAG
CGCACTGGAGCTGTTGCGAAGCACAATCAAACACGAGGGCGTCCTGGCAC
TTTATCGGGGGGCTTCTTCACGTGTACTCGGCTCCGCGCTAGGCAACTCG
GTGTTATTCGGTGCGAATGGCGCCTTCCTTCAAGCCTTTCAAGCAAATAC
TGCCCAGCCACTGAGTGGAGCCTTTGTCCTCGCTTCGGCCTTCACAGGGG
TGGCAGAGGCAGCAATTTGGACGCCAATGGATCTGCTTAAGACTCGCTGC
CAAGTAGAGTACGGCAAAAAGGTGGACGTGACGCCTCTTCGAGTGGCGCG
GCAACTCTTCCAGGACCGGGGCGTCCGGGCCCTGTACGCGGGCGGAGGTC
CCACACTGCTGAGGGAAATTGTCGGGAACGCAATCTACTTCACGGTATAT
CAGGTGATCAAGCAGGCTTTGATGCAATTTCGGGGCCTGCGGGAGGGTGA
CGCCGCGACCTTCGTCGTGGCAGGCGGGTGCGCAGGGACGGCCTACTGGT
TCTCTATCTTCCCCTTGGACACGGTCAAGTCGATCGTCCAGGCACAAGAG
GCGCACATCACGGGAATGCAGGTAGCTCGGGACCTTTATGCCAAAGGAGG
CGTGGCTGCGTTCTACAAAGGGGTGGGGCCGGCCATGCTTCGAGCGTTCC
CTGCCTGTGCAGCCACGTGGACGACCTTCGAGTATTCCTTGATGGCATTG
AAGCGACTCGAGTAGATGCAAGCTGCGGCCGCAGGACAAGCGGGAGGTAC
AGTCCTGGCATCAGGCGTGGCTAAAATGAGCGCACTGGAGCTGTTGCGAA
GCACAATCAAACACGAGGGCGTCCTGGCACTTTATCGGGGGGCTTCTTCA
CGTGTACTCGGCTCCGCGCTAGGCAACTCGGTGTTATTCGGTGCGAATGG
CGCCTTCCTTCAAGCCTTTCAAGCAAATACTGCCCAGCCACTGAGTGGAG
CCTTTGTCCTCGCTTCGGCCTTCACAGGGGTGGCAGAGGCAGCAATTTGG
ACGCCAATGG

Synonyms

Publications