rna5527, rna5527 (mRNA) Nannochloropsis gaditana

Overview
Namerna5527
Unique Namerna5527
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1350
Alignment locationCM002466.1:202791..205208 -

Link to JBrowse

Properties
Property NameValue
ProductLeucine-rich repeat, ribonuclease inhibitor subtype
Orig transcript idgnl|cribi|Naga_100016g82.2950.mrna
Orig protein idgnl|cribi|Naga_100016g82.2950
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:202791..205208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g82gene5340Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25141.1cds5513Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5527rna5527-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5527 ID=rna5527|Name=rna5527|organism=Nannochloropsis gaditana|type=mRNA|length=1350bp
ATGGAGCGAGACAGAGAGGAAGGCGGGACTGATGCGGCCTCAGGCGTCCT
TTCTCTCCTGTGTGGCCTTCTTGTAGGCCCCTACGCCCTGCTGGTGACAG
CTCTTCTCTCTCTCCTGTCAAGGACGATGAGCGCCTTCAGCCCCCGTCTC
GCTCGCTCCTTCCTCCCCCCTCTCGTCCTCCTGGGCCTCGGCACTGGCGC
TGCTTCACTGCTTTCTCCTTCCCCCACATCCGCGTCCCCCAACGTCTTGT
CACAGGAGGACGACGCGGTGCCCCCCTCCCTCTCCTCCTCTCCCCGGCGC
CGCCAGCACGACCAAGCCTGTGCTCACCTCCTTCAACACCTTTCGCGCTT
CAAGGCCCCTCCCTCCTTCGCTTCCTCCCCCCCGTCCTCCTCCCGCCGTC
GCCGTCGTGGTGGTGCCGCTACGACCCGCCGTTACCTGCAGCAGACCCTC
CCTCCTTCCCGGGAGCGGGCAGGCGGGAGGGAGGTTCTTAGGGCGGTGGA
ATGTCGAGACGCCTTGGGCCGCTCCGCCCTGGCGATCGCGGCCATGCAGG
GCGACGAGGAGAGCGTGCAGGTGCTGATAGAGGACGGGTATCAGGTCGGG
GCGGAGGACGTGCACCGACTCACCCCTCTCTCGTACGCGGCCTGGAAAGG
GCATGCGGCTGTGGTGGAGCTCCTGCTGGAGGGAGGCGCAGACGGCGGGC
ATTTCGACGACTTCGGGGTAACGCCACTCCACAAGGCAGCGGCCTTCGGG
CACCCCCGTGTGGTGAGCATGCTCTTGCGGGGGAGGGGTCGGGAGGAATG
TGAAGGGGAAGCGCCCCTGGAGGCGGACCTGCCCACGGGTCCGGTCCTCG
CGCCTCCGCACTACGAAGCCCAGAGCCTCCACCAGACTCCGCTTCATCTT
TCCCTCCGCCCCTCTCCAGCCCTCGACTCTGCCGTCCGCCAAGAGCTTGT
GTTGACCCTGCTGGCGCACGGGGCCTCTGTGAGCGCGCAGGACCTAAATG
GGGACACCGCCTTGCACGCCGCTGCGCGACTCGGGGAGGCGCCGCTCTTG
TGGCTGCTGCTGGTTGGGGCAACAGAGGAAGGGCAAGACAGGGGAGGGAG
GAGCGTGGAAAGAGAAGCAGAAAGGAAGAAGGCGTGGAGGATCACAAATG
CGAAGGGAGAGACGCCTGTCGAGTGCTTAGCGTGGTGGAAGCTGTACCTT
AGCCTTCTGTTTCTGATGGCGGGTGCATGGGCAAATAAACAAATGCATCG
TGTCGACAGTATCAAAAGGCGTGTGTCTAGGTTGCCAGGCTCACATATCT
CTCACAATGATTATTTCGCGCGTTTCGCCGTGGAAGCGATCTATTTTTAG
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protein sequence of rna5527

>rna5527-protein ID=rna5527-protein|Name=rna5527|organism=Nannochloropsis gaditana|type=polypeptide|length=457bp
MSLLTAKTKICMATEQFPQCSAGAVAKDSRCQPIPLARLPYPVGWRLVCD
FLGTHDIIHLAQTTSEHLNMGFSMIQHLTLRIREEDENLGRKGEGCQSMC
TSRAVGSHLARFLSRCVELDSLSCRSLTFSKGECLGDAMRQLRIRCLHSP
SPLSRVRVLALSHAGLRVEGLLHLLPSLHLFPALEELLLDGNALGNQGVR
AFSRSLRGLGWKDSDGGRVSERFSSMGTGQCLKVLSLASNGIGTAGANEL
ALLLSGAGNGDVRAWNGGDAHPASAVLETSQHQSLSQRHPCALLEALCLD
GNVLGPSGTAHLARAFRRGACTQLRQLHLRNNDVRGQGLQDLLSAFASGA
CPHLTVLSLESNMFGTVGARWLAHALSSGACADLRVLNLNFTFIGEHGMR
ALAEAFGQGACRRIHTLYLKSACLRRASTLDHLQASTRAGEREGRGERER
GYPVLVL
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mRNA from alignment at CM002466.1:202791..205208-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5527 ID=rna5527|Name=rna5527|organism=Nannochloropsis gaditana|type=mRNA|length=2418bp|location=Sequence derived from alignment at CM002466.1:202791..205208- (Nannochloropsis gaditana)
GGTCCAACGGCTCGCTGCTGATGCGCGTCCCTCTCATCCTGTATTCCGTA
CCTCAGACTCTAATTAGGGGTACCGGCGGGCAATGATGCCAATCTTACCT
TGAAATTGGTTATATTTCCATATTTTAGTCGCTTGACATTCTTCCGTCCC
CGCGCTCGTTAGTATGCTATTACCGTTGACACTATGTGAAGTTGCTTACC
CTTCAACGTATCCACTTACACAGGCACCTCATTGCTCATGCGAGTTCGAG
ATTATGTCGTTATTGACTGCCAAAACTAAAATTTGTATGGCGACCGAACA
ATTTCCACAATGTAGTGCAGGTGCTGTCGCCAAGGACAGCCGCTGCCAGC
CGATACCTCTAGCCAGGCTCCCCTATCCCGTTGGATGGCGGTTAGTCTGT
GATTTTTTGGGAACTCATGATATAATCCACTTGGCACAAACCACTAGTGA
ACATTTAAATATGGGGTTTTCCATGATCCAGCACCTCACCCTCCGGATTC
GGGAAGAAGACGAGAATCTGGGCAGGAAAGGCGAGGGCTGCCAGAGCATG
TGTACCTCGCGTGCCGTGGGCTCTCACCTTGCCCGCTTTCTCTCCCGCTG
TGTCGAACTTGACTCTCTTTCATGTCGATCCTTGACGTTTTCAAAGGGAG
AATGTCTGGGTGATGCCATGCGTCAACTTCGGATCAGATGTCTGCACTCC
CCGTCCCCCTTGTCTAGAGTGCGGGTCCTTGCTCTGTCCCACGCGGGCCT
CCGTGTTGAGGGCTTGCTGCACTTGCTGCCCTCCTTGCATCTTTTCCCCG
CGCTTGAAGAGTTGCTGCTAGATGGAAACGCATTGGGCAACCAGGGTGTG
CGAGCCTTCTCTAGGAGTCTACGGGGGCTGGGGTGGAAAGACAGTGATGG
AGGCCGTGTCTCGGAGCGTTTCAGCTCAATGGGAACCGGTCAGTGCCTCA
AGGTCTTGTCTCTGGCATCAAATGGAATAGGCACCGCGGGGGCGAATGAA
CTGGCCCTGTTGCTGTCAGGGGCGGGCAACGGCGACGTCCGTGCTTGGAA
TGGCGGAGACGCGCACCCCGCCTCGGCCGTTCTCGAGACGAGCCAGCACC
AGTCATTGTCGCAGCGCCATCCCTGTGCCTTGCTGGAGGCGCTCTGCTTG
GACGGAAACGTCTTGGGCCCCAGCGGGACAGCCCATCTCGCCCGGGCTTT
CAGGCGCGGGGCCTGCACCCAGCTCCGCCAGCTGCATTTGCGGAACAACG
ACGTGCGAGGGCAAGGGCTGCAGGATCTCCTGAGTGCTTTTGCGTCCGGC
GCCTGCCCACATTTGACCGTGCTAAGCCTGGAAAGCAACATGTTCGGGAC
GGTGGGGGCGCGATGGCTCGCTCACGCCCTCTCTTCCGGCGCCTGTGCCG
ACCTGCGGGTCCTGAATTTGAATTTCACCTTCATCGGGGAGCACGGCATG
CGCGCCTTGGCAGAGGCTTTTGGGCAGGGTGCCTGTCGGCGCATCCACAC
TCTGTATCTCAAATCGGCGTGCTTGCGGCGGGCCAGCACGTTAGACCATC
TGCAGGCGTCCACGAGGGCGGGGGAGAGGGAGGGGCGGGGGGAAAGGGAG
CGGGGGTACCCGGTCCTGGTCTTGTGAGAGCCCATGCGGACGCTGCTCTC
TGTCATGCGAGGAAAACGATGGGATGTCGGCAGGAGATGAGGACTTTAAT
GGGTACAGGGCTGACATTTCCGGATGATAGATATTCCTTGCTGTGGGATA
GCGCGGATGCTGGTGGAAAGGCAGGGTATTTGCACACGTAAAGGGTGGAT
GTTTATATATATGTAGATGTGTTGTAGAGTTCGTTGCGCAGTTGATCTGC
AGGAGATTCTGGATCGTGGGATCGTTACAGGACTCCACTTGAAGGAGGAG
AGACCACCCGCCTGGTTCCCCGCCTTGTCCAAACGAATCAGGCGGGTGCC
ACGTCGCAGTGCAGGGATGCGGAGCATATGCCCTGTCGGAGGATTGAGAA
GACTGCTCCAGCAGTGACCTGATGGGCAGCCGTACAATCCGACTTGTCTA
AATGGTTCCCATCAGGCATGCTATCTTCTGTCGACATGTGGGCGAGGCGA
GTCGAAAGTAAAGGTGAGAGGAAAGAGAGCAGGCGAGCCTGGTTAATTTT
TTTAAAAAAGCAGATCCGATCGCGCCAGTGCAACCAAAAGAGAATCGCAG
TAAACCTTAATGAGACCACCACTAAAAATAGATCGCTTCCACGGCGAAAC
GCGCGAAATAATCATTGTGAGAGATATGTGAGCCTGGCAACCTAGACACA
CGCCTTTTGATACTGTCGACACGATGCATTTGTTTATTTGCTTATATCAC
CCGATCCAAAGTCCAGTCCTAGTCTTGACATTACGTGCACTAACCCCATG
CACCCGCCATCAGAAACA
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Coding sequence (CDS) from alignment at CM002466.1:202791..205208-

>rna5527 ID=rna5527|Name=rna5527|organism=Nannochloropsis gaditana|type=CDS|length=1374bp|location=Sequence derived from alignment at CM002466.1:202791..205208- (Nannochloropsis gaditana)
ATGTCGTTATTGACTGCCAAAACTAAAATTTGTATGGCGACCGAACAATT
TCCACAATGTAGTGCAGGTGCTGTCGCCAAGGACAGCCGCTGCCAGCCGA
TACCTCTAGCCAGGCTCCCCTATCCCGTTGGATGGCGGTTAGTCTGTGAT
TTTTTGGGAACTCATGATATAATCCACTTGGCACAAACCACTAGTGAACA
TTTAAATATGGGGTTTTCCATGATCCAGCACCTCACCCTCCGGATTCGGG
AAGAAGACGAGAATCTGGGCAGGAAAGGCGAGGGCTGCCAGAGCATGTGT
ACCTCGCGTGCCGTGGGCTCTCACCTTGCCCGCTTTCTCTCCCGCTGTGT
CGAACTTGACTCTCTTTCATGTCGATCCTTGACGTTTTCAAAGGGAGAAT
GTCTGGGTGATGCCATGCGTCAACTTCGGATCAGATGTCTGCACTCCCCG
TCCCCCTTGTCTAGAGTGCGGGTCCTTGCTCTGTCCCACGCGGGCCTCCG
TGTTGAGGGCTTGCTGCACTTGCTGCCCTCCTTGCATCTTTTCCCCGCGC
TTGAAGAGTTGCTGCTAGATGGAAACGCATTGGGCAACCAGGGTGTGCGA
GCCTTCTCTAGGAGTCTACGGGGGCTGGGGTGGAAAGACAGTGATGGAGG
CCGTGTCTCGGAGCGTTTCAGCTCAATGGGAACCGGTCAGTGCCTCAAGG
TCTTGTCTCTGGCATCAAATGGAATAGGCACCGCGGGGGCGAATGAACTG
GCCCTGTTGCTGTCAGGGGCGGGCAACGGCGACGTCCGTGCTTGGAATGG
CGGAGACGCGCACCCCGCCTCGGCCGTTCTCGAGACGAGCCAGCACCAGT
CATTGTCGCAGCGCCATCCCTGTGCCTTGCTGGAGGCGCTCTGCTTGGAC
GGAAACGTCTTGGGCCCCAGCGGGACAGCCCATCTCGCCCGGGCTTTCAG
GCGCGGGGCCTGCACCCAGCTCCGCCAGCTGCATTTGCGGAACAACGACG
TGCGAGGGCAAGGGCTGCAGGATCTCCTGAGTGCTTTTGCGTCCGGCGCC
TGCCCACATTTGACCGTGCTAAGCCTGGAAAGCAACATGTTCGGGACGGT
GGGGGCGCGATGGCTCGCTCACGCCCTCTCTTCCGGCGCCTGTGCCGACC
TGCGGGTCCTGAATTTGAATTTCACCTTCATCGGGGAGCACGGCATGCGC
GCCTTGGCAGAGGCTTTTGGGCAGGGTGCCTGTCGGCGCATCCACACTCT
GTATCTCAAATCGGCGTGCTTGCGGCGGGCCAGCACGTTAGACCATCTGC
AGGCGTCCACGAGGGCGGGGGAGAGGGAGGGGCGGGGGGAAAGGGAGCGG
GGGTACCCGGTCCTGGTCTTGTGA
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Synonyms
Publications