rna5519, rna5519 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5519
Unique Name	rna5519
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1403
Alignment location	CM002466.1:185339..185789 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100490g5.5290.mrna
Orig protein id	gnl\|cribi\|Naga_100490g5.5290
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:185339..185789 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100490g5	gene5331	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5519	rna5519-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25169.1	cds5505	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:185339..185789-
coding sequence from alignment at CM002466.1:185339..185789-

mRNA sequence

>rna5519 ID=rna5519|Name=rna5519|organism=Nannochloropsis gaditana|type=mRNA|length=1403bp
AGAAACATTTTGGACGCGCATCATCGGCAACACGGATACCCCCCAAAGGC
TTATTTTTCAGTATGCTCCGCGTCGGAGTATCTCCAAGCGGAGGCGGCTG
GGTACAAAGCGGGGGGTGGCGATTTATAATTAAAAAGAATGAAGTCTACG
CAAGTCCTGCGATACTAGTTTCATGAGTCCGTAGCTCCTTTGCTTGATGT
ATTCTTGTAATTTAAAAAAAATGCAAATCACCTTCGTGATGTGTAATTCT
GAATGTACTCCCGCAAATTTTGTGTTGTCCCGCCGCCCGTCATTTTCAAG
ATACTCACCTATCACACGTTACCGTCCTTTACCGCTCCACCTATGCACAA
CACACGAAAAAGGAAAGGTATCACACTCTGCCACCATACATGTTGTCTGG
CACCCGCCGTGCTTTTTCCCGCAGGTCTATCCTCTCCCCTTGGACCAGGC
CTACCTCCTTCGCCCCGGCCTCCATCACCCCGACAAGGGCGTTTGCCACA
GGTTTTATAGAGGAAGAGAAAGCTGTCCACGTACACAACCTCCTGAAAGC
CAAGAAGGAGGCTAGACTAACTTTTGATGAAATCGCGGCCAAAACGGGTC
TGACAAACGCTTACGTGGCACAGCTCTTTTACAGACAAGCCCAACTCAAG
CCCGAGACGGTGCCCAAGATGGAGGCCGCCGTACCCACACTGACAGGAAA
AGATTTGGAGATAATGCAAGAGGTGCCCTTCCGCTCCTACGACCGCGACG
TGCTGCGGACGGAGCCCTTGGTCTATCGCTTGGAGGAGGCGGTGCTACAT
TACGGTCTAGGCATCAAGGCCATCGTGAACGAGAAATTTGGGGACGGTAC
GTGATCCGCGTCGCTCTTATTTCTGACCCTTCCCCCCGTTTTTCATGCGC
TCACCCCATCTCTTTATCCTGTTTATCTGTTTTCTGACCTCCGTGGGGCC
ATAGGCATCATGTCTGCCATAGACATGTATGCCACTGTCGAGCGCGTCAA
GGGTCCTCAGGGGGAACCACGGGTTGTCCTCACATTCAATGGCAAGTTCT
TGCCGCATGTGGAGCAACGTGAAACCCTGAATGTTCAGCAACGAGAATAG
GAGAGAAGAGCGACCGATTTTATCGCGGTGAAGGGTGTGCAGGTTAGACG
AGAAACTGACGTGGGAAAGACAAAGATCGAGAAAAGGTGTTCGTGATGGA
CAAATTTATGATGGACAATATGGCGCAATAATATTTAGCTCAATAAAGTG
ATTTACTTCTTTTTCTCACGCATTTGATAATTCGTGAAGGGGGGAGGCGA
GATTTGAGCAAATTTAAAAGGAGCCCCCCCCCATGCAGTAAGAAGCAAAG
GTGACTTCAAAAATCAATTTCCTAGAAGAACACAAAACGTAGCAAAATCC
CTG

protein sequence of rna5519

>rna5519-protein ID=rna5519-protein|Name=rna5519|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MHHYCVFLVLDVIYSLLRREKEKEEMLGDVIPVGSIAAGDKVIILEYCIA
SDQLRAVDARLPLFQMERKSLLDNRGSQRSWRPPVCMGGERGQSRLTTSP
TFVF

mRNA from alignment at CM002466.1:185339..185789-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5519 ID=rna5519|Name=rna5519|organism=Nannochloropsis gaditana|type=mRNA|length=451bp|location=Sequence derived from alignment at CM002466.1:185339..185789- (Nannochloropsis gaditana)
ATGCATCATTACTGTGTCTTTCTTGTACTTGATGTGATTTATTCATTACT
TAGGCGAGAGAAGGAGAAAGAAGAGATGCTGGGGGACGGTAGGGAATAGA
TAATACGAAGGAAACCAGAAGGAGGGATGTGATTTTTTCGTATGCCTATA
TGTATTCATATGTGTACTTGTGTGCGCATGCCGTTTCTCGGGATAGTGGA
CGTGAAGGCGCCTTGCTGGTACAGTAATACCAGTTGGCAGCATTGCTGCT
GGAGACAAGGTTATCATCCTAGAGTACTGCATTGCCTCTGACCAGCTGCG
TGCCGTCGACGCGCGTTTACCGCTTTTCCAAATGGAAAGGAAGTCCCTCC
TCGACAATAGAGGAAGTCAAAGGAGTTGGAGACCTCCCGTGTGCATGGGG
GGAGAGAGAGGGCAGTCACGTCTCACTACATCACCGACTTTTGTCTTTTG
A

Coding sequence (CDS) from alignment at CM002466.1:185339..185789-

>rna5519 ID=rna5519|Name=rna5519|organism=Nannochloropsis gaditana|type=CDS|length=630bp|location=Sequence derived from alignment at CM002466.1:185339..185789- (Nannochloropsis gaditana)
TAATACCAGTTGGCAGCATTGCTGCTGGAGACAAGGTTATCATCCTAGAG
TACTGCATTGCCTCTGACCAGCTGCGTGCCGTCGACGCGCGTTTACCGCT
TTTCCAAATGGAAAGGAAGTCCCTCCTCGACAATAGAGGAAGTCAAAGGA
GTTGGAGACCTCCCGTGTGCATGGGGGGAGAGAGAGGGCAGTCACGTCTC
ACTACATCACCGACTTTTGTCTTTTGAATGCATCATTACTGTGTCTTTCT
TGTACTTGATGTGATTTATTCATTACTTAGGCGAGAGAAGGAGAAAGAAG
AGATGCTGGGGGACGTAATACCAGTTGGCAGCATTGCTGCTGGAGACAAG
GTTATCATCCTAGAGTACTGCATTGCCTCTGACCAGCTGCGTGCCGTCGA
CGCGCGTTTACCGCTTTTCCAAATGGAAAGGAAGTCCCTCCTCGACAATA
GAGGAAGTCAAAGGAGTTGGAGACCTCCCGTGTGCATGGGGGGAGAGAGA
GGGCAGTCACGTCTCACTACATCACCGACTTTTGTCTTTTGAATGCATCA
TTACTGTGTCTTTCTTGTACTTGATGTGATTTATTCATTACTTAGGCGAG
AGAAGGAGAAAGAAGAGATGCTGGGGGACG

Synonyms

Publications