rna5518, rna5518 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5518
Unique Name	rna5518
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1324
Alignment location	CM002466.1:182490..185101 -

Link to JBrowse

Properties


Property Name	Value
Product	cyanate hydratase
Orig transcript id	gnl\|cribi\|Naga_100490g4.5289.mrna
Orig protein id	gnl\|cribi\|Naga_100490g4.5289
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:182490..185101 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100490g4	gene5330	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5518	rna5518-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25168.1	cds5504	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:182490..185101-
coding sequence from alignment at CM002466.1:182490..185101-

mRNA sequence

>rna5518 ID=rna5518|Name=rna5518|organism=Nannochloropsis gaditana|type=mRNA|length=1324bp
CACCACAGGGTCGAATGCGCAAGGCTCCGACATGAGACAATGCTCGGATT
GTGCCTCGGTGCTGAAAGTGGGGCAGGAAGAGTAAGGTTTTTGCAGGCAA
AGGCCCTTGGTCGTGGTTGAGGACGATCGCAGTGCTGTTGGACCTGCCGC
CCCGACGGGTCAAGACGCATCCTTTTCTTTGGTCGGAAAAAAGGGGGGAG
TGAAAGGGCTTGACTGGGCGACGTCATCTCACATCGAGGTCATGAAGACA
AAGCTACGACCTGGTTGGTGCTTGCCTCTTTTCCTGCTCATCGGTAAGAA
CGGAAGTTCCTCAAGAATTGGTATCAGAGGCTGAGTTGAATGTGTCCATG
TGTATCTTCAACAAAGCAACTCAGCCCCGCGTTGACTCTAAGCCTAAGCC
TTGTGTTGCACGCTAGACGGCATTGCCGCAGACCCTGGGGCCCGCATGGC
ATTTCTATGACTATCTCTGGTGTCCTGTGGCCCCTGCATGCCTTGCCCCT
CGCCTCGTCCTGTTTCCACAGCATCCATCCTTGAGTGCTGCCTGAACGCC
GACAAATCCTTGCGTCGAGGCAGCATCCACAAGCCTGACCCTCCTTTCCC
GTCTTATCTCCCTCTGCACTCCCTCCCTTCAGTGGCCACGCCCTGGTCCT
CCCTCCTCCCCACCCAAGGCTTCTGGCTCACTTCTACCCCACCTTCATCC
CTGCATCGCGGCCTTTGCACAAATCGGTGTCCTTGCGCAAGAACCAGACG
CCGAGGGTCCAAGGACGAAAGTGACTGCGGCAATGGCCGGGGAAAGGGGG
GCCTCGAGCCACAGGCCCGTGTCCTCAGGCGGGGGGAGGAAGAGGAGGGA
GGGAGGGAGGGCAAGGAGGCTTTCCGCGCCCTGCCCTCTCCTCTAGCCCA
TCCAAAAAGTCCTTCGCTGCAAACGGCCTCCTTGTCGCACGCTCCTTCCC
TTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCCCCCAGTCCCCT
AACGCAATCCTCCGGGCCGCCGTTTCCTCCCCGCAGACGCCCCTCCCTTT
CCTCCTCTCCCTCCTCAGCCAGCACGCCTCCCGCACCTACTTCGATACCG
AGACCGCGGCGGCCTTTCTAAACCGACTGGGCAAGGAGCAGGGGCGGGGC
CTGTCGGTGGTGAGGAAGGACAGGGGTCTTCAGGCGCTCTTGGCCCGACT
GCTGATCTTGGGGGAGGGGGTGGAGGACGAGGGGGAGGCGGGGGGAGGAA
GAGGGGCGCGCGAGGACTCTCTTGCGCCGGGAGAGGAAATGGAACGCCAA
GGCCTGCACGCTGATACTTAACGG

protein sequence of rna5518

>rna5518-protein ID=rna5518-protein|Name=rna5518|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MLSGTRRAFSRRSILSPWTRPTSFAPASITPTRAFATGFIEEEKAVHVHN
LLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPT
LTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKF
GDGT

mRNA from alignment at CM002466.1:182490..185101-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5518 ID=rna5518|Name=rna5518|organism=Nannochloropsis gaditana|type=mRNA|length=2612bp|location=Sequence derived from alignment at CM002466.1:182490..185101- (Nannochloropsis gaditana)
AGAAACATTTTGGACGCGCATCATCGGCAACACGGATACCCCCCAAAGGC
TTATTTTTCAGTATGCTCCGCGTCGGAGTATCTCCAAGCGGAGGCGGCTG
GGTACAAAGCGGGGGGTGGCGATTTATAATTAAAAAGAATGAAGTCTACG
CAAGTCCTGCGATACTAGTTTCATGAGTCCGTAGCTCCTTTGCTTGATGT
ATTCTTGTAATTTAAAAAAAATGCAAATCACCTTCGTGATGTGTAATTCT
GAATGTACTCCCGCAAATTTTGTGTTGTCCCGCCGCCCGTCATTTTCAAG
ATACTCACCTATCACACGTTACCGTCCTTTACCGCTCCACCTATGCACAA
CACACGAAAAAGGAAAGGTATCACACTCTGCCACCATACATGTTGTCTGG
CACCCGCCGTGCTTTTTCCCGCAGGTCTATCCTCTCCCCTTGGACCAGGC
CTACCTCCTTCGCCCCGGCCTCCATCACCCCGACAAGGGCGTTTGCCACA
GGTTTTATAGAGGAAGAGAAAGCTGTCCACGTACACAACCTCCTGAAAGC
CAAGAAGGAGGCTAGACTAACTTTTGATGAAATCGCGGCCAAAACGGGTC
TGACAAACGCTTACGTGGCACAGGTTGAAAGCAAGAAGGGTTGGATGACT
TGGGGGGAAAGCCGCGAAGGACATGCCGGGGGAATGACCCCTCAATGTCT
GAAAGAACCCATAGAATACATTTCTCGTTATTTGTTCGCTTTGGAAGAGC
AAACTATCGCAGACGTGTGTCATCATCCGTCACTGATCCTTTTTTTCCCC
TTCCCATTCCATTATGGCAGCTCTTTTACAGACAAGCCCAACTCAAGCCC
GAGACGGTGCCCAAGATGGAGGCCGCCGTACCCACACTGACAGGAAAAGA
TTTGGAGATAATGCAAGAGGTAAGCATTGAGGGTAGTGGGGTAGCGGACG
GGCTTTGGCGCATGCCTCAGGTGGATGACCCTCCTCCTCCTCCTCAGGTG
CCCTTCCGCTCCTACGACCGCGACGTGCTGCGGACGGAGCCCTTGGTCTA
TCGCTTGGAGGAGGCGGTGCTACATTACGGTCTAGGTACGTGAATGTAAC
CAAGACGTCAGCTTTCGAGTCGTGCTGATGAGTATAAGTTTTTGGTAGTT
GGACGTGAAGACAAGGGGGTTGTGTGGAGATGAAGAGCCGTGTTGGGCCT
TGAGGCAACCATTGTCTCAGAAAGCGAGGGTTGGTGGGGCCGTGCAAGGA
AAGAAGCAAGCCAAATCTGAGGGAAAGGGAGGAGTGGCTCCGTCGGGGTG
GGCGGGAATGGGAAGATGGATCGGTCGGGGCGATCGTAAGGTAGACATGC
CTTCCACAAGCGGCAGCTCTGCCCTTGGCATGCTCTCCCTCCCTTCGTCT
CTTCCTCCCCTCCCCCTTCCTCTTCACGCCCTCCCGTCCGTCCACTTTTT
CGCCTTGACGACCCCGTGTCCCCAAGAAGAGTGACCGATCCGGCGGACAT
GTTTGAGCACGGCCCTTTCCTCGCGCCCCCATGAGGCACTCGCCACCCTG
CATTTGGTGTGCGAGGATGCACGTTTGATGGCTGCGTCCTCTCACGCTAA
ATCCAGGCATGTCAAGCGTCGTTCATGCGCAAATCCCTCCTTCTCACGGG
GCTCCCGATGTTGTCTGTCTCGTGCGGAGGCCCTGCGTGGAGAGAGGGGT
GGTGTAGGCAGGTGTTGGAGGGGGGGGGACTCCCAGGATGCACGTGACTG
GCTGTGATTAAAGCGAAGACGTTCTTCCGAGACCCGAGACGGAGGCAAAA
CGCCTTCCGCGGTGCGGGACTTTCACTACACTTGACCTGAGCCGTCATTA
CTTTGCGTCCCTCATGGGCTCCTGACTCTCAGCAGCCGAAAATTTCGTGA
GAGGCACGGAATCATGGTCCGAGACAGGAGTCTTGCGGGCGATGAAACAG
GACTTGGGAAGATACCTCCGAGGGAATTAAGTCGGTCTGACCCTTCTGGA
ACATTCCACCCCGACACAGGCATCAAGGCCATCGTGAACGAGAAATTTGG
GGACGGTACGTGATCCGCGTCGCTCTTATTTCTGACCCTTCCCCCCGTTT
TTCATGCGCTCACCCCATCTCTTTATCCTGTTTATCTGTTTTCTGACCTC
CGTGGGGCCATAGGCATCATGTCTGCCATAGACATGTATGCCACTGTCGA
GCGCGTCAAGGGTCCTCAGGGGGAACCACGGGTTGTCCTCACATTCAATG
GCAAGTTCTTGCCGCATGTGGAGCAACGTGAAACCCTGAATGTTCAGCAA
CGAGAATAGGAGAGAAGAGCGACCGATTTTATCGCGGTGAAGGGTGTGCA
GGTTAGACGAGAAACTGACGTGGGAAAGACAAAGATCGAGAAAAGGTGTT
CGTGATGGACAAATTTATGATGGACAATATGGCGCAATAATATTTAGCTC
AATAAAGTGATTTACTTCTTTTTCTCACGCATTTGATAATTCGTGAAGGG
GGGAGGCGAGATTTGAGCAAATTTAAAAGGAGCCCCCCCCCATGCAGTAA
GAAGCAAAGGTGACTTCAAAAATCAATTTCCTAGAAGAACACAAAACGTA
GCAAAATCCCTG

Coding sequence (CDS) from alignment at CM002466.1:182490..185101-

>rna5518 ID=rna5518|Name=rna5518|organism=Nannochloropsis gaditana|type=CDS|length=1860bp|location=Sequence derived from alignment at CM002466.1:182490..185101- (Nannochloropsis gaditana)
GCATCAAGGCCATCGTGAACGAGAAATTTGGGGACGGTACGTGAGTGCCC
TTCCGCTCCTACGACCGCGACGTGCTGCGGACGGAGCCCTTGGTCTATCG
CTTGGAGGAGGCGGTGCTACATTACGGTCTAGCTCTTTTACAGACAAGCC
CAACTCAAGCCCGAGACGGTGCCCAAGATGGAGGCCGCCGTACCCACACT
GACAGGAAAAGATTTGGAGATAATGCAAGAGATGTTGTCTGGCACCCGCC
GTGCTTTTTCCCGCAGGTCTATCCTCTCCCCTTGGACCAGGCCTACCTCC
TTCGCCCCGGCCTCCATCACCCCGACAAGGGCGTTTGCCACAGGTTTTAT
AGAGGAAGAGAAAGCTGTCCACGTACACAACCTCCTGAAAGCCAAGAAGG
AGGCTAGACTAACTTTTGATGAAATCGCGGCCAAAACGGGTCTGACAAAC
GCTTACGTGGCACAGGCATCAAGGCCATCGTGAACGAGAAATTTGGGGAC
GGTACGTGAGTGCCCTTCCGCTCCTACGACCGCGACGTGCTGCGGACGGA
GCCCTTGGTCTATCGCTTGGAGGAGGCGGTGCTACATTACGGTCTAGCTC
TTTTACAGACAAGCCCAACTCAAGCCCGAGACGGTGCCCAAGATGGAGGC
CGCCGTACCCACACTGACAGGAAAAGATTTGGAGATAATGCAAGAGATGT
TGTCTGGCACCCGCCGTGCTTTTTCCCGCAGGTCTATCCTCTCCCCTTGG
ACCAGGCCTACCTCCTTCGCCCCGGCCTCCATCACCCCGACAAGGGCGTT
TGCCACAGGTTTTATAGAGGAAGAGAAAGCTGTCCACGTACACAACCTCC
TGAAAGCCAAGAAGGAGGCTAGACTAACTTTTGATGAAATCGCGGCCAAA
ACGGGTCTGACAAACGCTTACGTGGCACAGGCATCAAGGCCATCGTGAAC
GAGAAATTTGGGGACGGTACGTGAGTGCCCTTCCGCTCCTACGACCGCGA
CGTGCTGCGGACGGAGCCCTTGGTCTATCGCTTGGAGGAGGCGGTGCTAC
ATTACGGTCTAGCTCTTTTACAGACAAGCCCAACTCAAGCCCGAGACGGT
GCCCAAGATGGAGGCCGCCGTACCCACACTGACAGGAAAAGATTTGGAGA
TAATGCAAGAGATGTTGTCTGGCACCCGCCGTGCTTTTTCCCGCAGGTCT
ATCCTCTCCCCTTGGACCAGGCCTACCTCCTTCGCCCCGGCCTCCATCAC
CCCGACAAGGGCGTTTGCCACAGGTTTTATAGAGGAAGAGAAAGCTGTCC
ACGTACACAACCTCCTGAAAGCCAAGAAGGAGGCTAGACTAACTTTTGAT
GAAATCGCGGCCAAAACGGGTCTGACAAACGCTTACGTGGCACAGGCATC
AAGGCCATCGTGAACGAGAAATTTGGGGACGGTACGTGAGTGCCCTTCCG
CTCCTACGACCGCGACGTGCTGCGGACGGAGCCCTTGGTCTATCGCTTGG
AGGAGGCGGTGCTACATTACGGTCTAGCTCTTTTACAGACAAGCCCAACT
CAAGCCCGAGACGGTGCCCAAGATGGAGGCCGCCGTACCCACACTGACAG
GAAAAGATTTGGAGATAATGCAAGAGATGTTGTCTGGCACCCGCCGTGCT
TTTTCCCGCAGGTCTATCCTCTCCCCTTGGACCAGGCCTACCTCCTTCGC
CCCGGCCTCCATCACCCCGACAAGGGCGTTTGCCACAGGTTTTATAGAGG
AAGAGAAAGCTGTCCACGTACACAACCTCCTGAAAGCCAAGAAGGAGGCT
AGACTAACTTTTGATGAAATCGCGGCCAAAACGGGTCTGACAAACGCTTA
CGTGGCACAG

Synonyms

Publications