EWM25168.1, cds5504 (CDS) Nannochloropsis gaditana

Overview
NameEWM25168.1
Unique Namecds5504
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:184479..184712 -
Alignment locationCM002466.1:184183..184281 -
Alignment locationCM002466.1:184017..184104 -
Alignment locationCM002466.1:183039..183082 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25168.1
Productcyanate hydratase
Orig transcript idgnl|cribi|Naga_100490g4.5289.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:184479..184712 -
CM002466.1supercontigCM002466.1:184183..184281 -
CM002466.1supercontigCM002466.1:184017..184104 -
CM002466.1supercontigCM002466.1:183039..183082 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
GO:0009439cyanate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003677DNA binding
GO:0008824cyanate hydratase activity
Vocabulary: INTERPRO
TermDefinition
IPR010982Lambda_DNA-bd_dom
IPR003712Cyanate_lyase_C
IPR008076Cyanase
Homology
BLAST of EWM25168.1 vs. NCBI_GenBank
Match: gi|585106811|gb|EWM25168.1| (cyanate hydratase [Nannochloropsis gaditana])

HSP 1 Score: 316.235 bits (809), Expect = 3.032e-109
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    1 MLSGTRRAFSRRSILSPWTRPTSFAPASITPTRAFATGFIEEEKAVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKFGDGT 154
            MLSGTRRAFSRRSILSPWTRPTSFAPASITPTRAFATGFIEEEKAVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKFGDGT
Sbjct:    1 MLSGTRRAFSRRSILSPWTRPTSFAPASITPTRAFATGFIEEEKAVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKFGDGT 154          
BLAST of EWM25168.1 vs. NCBI_GenBank
Match: gi|242039407|ref|XP_002467098.1| (cyanate hydratase [Sorghum bicolor] >gi|317376154|sp|C5WYI7.1|CYNS_SORBI RecName: Full=Cyanate hydratase; Short=Cyanase; AltName: Full=Cyanate hydrolase; AltName: Full=Cyanate lyase >gi|241920952|gb|EER94096.1| hypothetical protein SORBI_3001G222600 [Sorghum bicolor])

HSP 1 Score: 128.642 bits (322), Expect = 5.061e-35
Identity = 62/111 (55.86%), Postives = 85/111 (76.58%), Query Frame = 0
Query:   43 EKAVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKFGDG 153
            E+A  V  L++ K+E+  TF EIAA+TGLTN YVAQL  RQA LK +TVP + AA+PTLT + +++M + PFRSY+ D+++ EP +YRL EAV+H+G  IK I+NE+FGDG
Sbjct:    6 ERAAVVRRLMEVKEESGKTFSEIAAETGLTNVYVAQLLRRQAHLKADTVPALRAALPTLTDELVQLMMQPPFRSYNPDIVQ-EPAIYRLNEAVMHFGESIKEIINEEFGDG 115          
BLAST of EWM25168.1 vs. NCBI_GenBank
Match: gi|1025225843|ref|XP_016479966.1| (PREDICTED: cyanate hydratase isoform X2 [Nicotiana tabacum])

HSP 1 Score: 127.487 bits (319), Expect = 1.182e-34
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = 0
Query:   42 EEKAVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKFGDG 153
            E KA  V +L+  K+++  TF +IA +TGLTN YVAQL  RQAQLKPET PK++AA+P L+ + L  M E P RSYD ++++ +P VYRL EAV+H+G  IK I+NE+FGDG
Sbjct:    2 ENKANMVASLMSVKQKSGKTFSQIAEETGLTNVYVAQLLRRQAQLKPETAPKLKAALPLLSDEQLHDMMEAPLRSYDPNLIQ-DPTVYRLNEAVMHFGESIKEIINEEFGDG 112          
BLAST of EWM25168.1 vs. NCBI_GenBank
Match: gi|698460114|ref|XP_009781454.1| (PREDICTED: cyanate hydratase [Nicotiana sylvestris] >gi|1025225839|ref|XP_016479958.1| PREDICTED: cyanate hydratase isoform X1 [Nicotiana tabacum])

HSP 1 Score: 127.487 bits (319), Expect = 1.508e-34
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = 0
Query:   42 EEKAVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKFGDG 153
            E KA  V +L+  K+++  TF +IA +TGLTN YVAQL  RQAQLKPET PK++AA+P L+ + L  M E P RSYD ++++ +P VYRL EAV+H+G  IK I+NE+FGDG
Sbjct:    2 ENKANMVASLMSVKQKSGKTFSQIAEETGLTNVYVAQLLRRQAQLKPETAPKLKAALPLLSDEQLHDMMEAPLRSYDPNLIQ-DPTVYRLNEAVMHFGESIKEIINEEFGDG 112          
BLAST of EWM25168.1 vs. NCBI_GenBank
Match: gi|460404570|ref|XP_004247754.1| (PREDICTED: cyanate hydratase [Solanum lycopersicum] >gi|970049502|ref|XP_015086264.1| PREDICTED: cyanate hydratase [Solanum pennellii])

HSP 1 Score: 127.487 bits (319), Expect = 1.508e-34
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = 0
Query:   42 EEKAVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKFGDG 153
            E KA  V +L+  K+++  TF +IA +TGLTN YVAQL  RQAQLKPET PK++AA+P L+ + +  M E P RSYD ++++ +P VYRL EAV+H+G  IK IVNE+FGDG
Sbjct:    2 ENKANMVASLMSVKQKSGKTFSQIAEETGLTNVYVAQLLRRQAQLKPETAPKLKAALPLLSDQQIHQMMEAPLRSYDPNLIQ-DPTVYRLNEAVMHFGESIKEIVNEEFGDG 112          
BLAST of EWM25168.1 vs. NCBI_GenBank
Match: gi|1111033052|ref|XP_019267789.1| (PREDICTED: cyanate hydratase isoform X2 [Nicotiana attenuata] >gi|1102287492|gb|OIT34143.1| cyanate hydratase [Nicotiana attenuata])

HSP 1 Score: 127.487 bits (319), Expect = 1.681e-34
Identity = 61/113 (53.98%), Postives = 84/113 (74.34%), Query Frame = 0
Query:   41 EEEKAVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKFGDG 153
            +  KA  V +L+  K+++  TF +IA +TGLTN YVAQL  RQAQLKPET PK++AA+P+L+ + L  M E P RSYD ++++ +P VYRL EAV+H+G  IK I+NE+FGDG
Sbjct:    4 QSNKANMVASLMSVKQKSGKTFSQIAEETGLTNVYVAQLLRRQAQLKPETAPKLKAALPSLSDEQLHDMMEAPLRSYDPNLIQ-DPTVYRLNEAVMHFGESIKEIINEEFGDG 115          
BLAST of EWM25168.1 vs. NCBI_GenBank
Match: gi|357146576|ref|XP_003574041.1| (PREDICTED: cyanate hydratase [Brachypodium distachyon] >gi|944061450|gb|KQJ97040.1| hypothetical protein BRADI_3g28470 [Brachypodium distachyon])

HSP 1 Score: 127.102 bits (318), Expect = 2.662e-34
Identity = 64/109 (58.72%), Postives = 78/109 (71.56%), Query Frame = 0
Query:   45 AVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKFGDG 153
            A  V  LL AK E   +F +IAA+TGLTN YVAQL  RQAQLKPET PK+ AAVP LT + +E+M   PFRSY  +++  EP +YRL EAV+H+G  IK I+NE FGDG
Sbjct:    9 AAVVPRLLAAKAECGKSFSDIAAETGLTNVYVAQLLRRQAQLKPETAPKLRAAVPALTDELVELMMRPPFRSYHPEIVH-EPAIYRLNEAVMHFGESIKEIINEDFGDG 116          
BLAST of EWM25168.1 vs. NCBI_GenBank
Match: gi|238008610|gb|ACR35340.1| (unknown [Zea mays])

HSP 1 Score: 125.176 bits (313), Expect = 2.727e-34
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 0
Query:   43 EKAVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKFGDG 153
            EKA  V  L++AK+ +  TF  IAA+TGLTN YVAQL  RQAQLK +TVP + AA+PTLT   +E+M + PFRSY  +++  EP +YRL EAV+H+G  IK I+NE+FGDG
Sbjct:    6 EKAAVVRRLMEAKEVSGKTFSGIAAETGLTNVYVAQLLRRQAQLKADTVPALRAALPTLTDDLIELMMQPPFRSYHPNIVH-EPAIYRLNEAVMHFGESIKEIINEEFGDG 115          
BLAST of EWM25168.1 vs. NCBI_GenBank
Match: gi|1111033050|ref|XP_019267788.1| (PREDICTED: cyanate hydratase isoform X1 [Nicotiana attenuata])

HSP 1 Score: 127.102 bits (318), Expect = 7.360e-34
Identity = 61/113 (53.98%), Postives = 84/113 (74.34%), Query Frame = 0
Query:   41 EEEKAVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKFGDG 153
            +  KA  V +L+  K+++  TF +IA +TGLTN YVAQL  RQAQLKPET PK++AA+P+L+ + L  M E P RSYD ++++ +P VYRL EAV+H+G  IK I+NE+FGDG
Sbjct:    4 QSNKANMVASLMSVKQKSGKTFSQIAEETGLTNVYVAQLLRRQAQLKPETAPKLKAALPSLSDEQLHDMMEAPLRSYDPNLIQ-DPTVYRLNEAVMHFGESIKEIINEEFGDG 115          
BLAST of EWM25168.1 vs. NCBI_GenBank
Match: gi|573959319|ref|XP_006661852.1| (PREDICTED: cyanate hydratase [Oryza brachyantha])

HSP 1 Score: 125.176 bits (313), Expect = 1.103e-33
Identity = 63/112 (56.25%), Postives = 79/112 (70.54%), Query Frame = 0
Query:   42 EEKAVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKFGDG 153
            E  A  V  L+ AK E+  +F +IAA+TGLTN YVAQL  RQAQLKP+T P + AAVP LT   + +M + PFRSY  D++  EP VYRL EAV+H+G  IK I+NE+FGDG
Sbjct:    4 ERAAAVVRRLMAAKAESGKSFSDIAAETGLTNVYVAQLLRRQAQLKPDTAPALRAAVPGLTDDLVALMMQPPFRSYHPDIIH-EPAVYRLNEAVMHFGESIKEIINEEFGDG 114          
The following BLAST results are available for this feature:
BLAST of EWM25168.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106811|gb|EWM25168.1|3.032e-109100.00cyanate hydratase [Nannochloropsis gaditana][more]
gi|242039407|ref|XP_002467098.1|5.061e-3555.86cyanate hydratase [Sorghum bicolor] >gi|317376154|... [more]
gi|1025225843|ref|XP_016479966.1|1.182e-3455.36PREDICTED: cyanate hydratase isoform X2 [Nicotiana... [more]
gi|698460114|ref|XP_009781454.1|1.508e-3455.36PREDICTED: cyanate hydratase [Nicotiana sylvestris... [more]
gi|460404570|ref|XP_004247754.1|1.508e-3455.36PREDICTED: cyanate hydratase [Solanum lycopersicum... [more]
gi|1111033052|ref|XP_019267789.1|1.681e-3453.98PREDICTED: cyanate hydratase isoform X2 [Nicotiana... [more]
gi|357146576|ref|XP_003574041.1|2.662e-3458.72PREDICTED: cyanate hydratase [Brachypodium distach... [more]
gi|238008610|gb|ACR35340.1|2.727e-3456.76unknown [Zea mays][more]
gi|1111033050|ref|XP_019267788.1|7.360e-3453.98PREDICTED: cyanate hydratase isoform X1 [Nicotiana... [more]
gi|573959319|ref|XP_006661852.1|1.103e-3356.25PREDICTED: cyanate hydratase [Oryza brachyantha][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5518rna5518Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications