rna5515, rna5515 (mRNA) Nannochloropsis gaditana

Overview
Namerna5515
Unique Namerna5515
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length214
Alignment locationCM002466.1:171826..172655 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100578g3.3643.mrna
Orig protein idgnl|cribi|Naga_100578g3.3643
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:171826..172655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100578g3gene5327Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5515rna5515-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25171.1cds5501Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5515 ID=rna5515|Name=rna5515|organism=Nannochloropsis gaditana|type=mRNA|length=214bp
ATGCGGAGGAGGAAGAGAGGAAGTCGAGGGAGGAGGGACGACGATCTCTC
CTTCTTCGAGGTCTCCATCAACTGGGGAGAGGGGCGAGTCAACCGGTCTA
CGCCGCCGCCCAGGCGCTGGACGTTCCCTGTGACTGGCTCCGGACACAGC
ACATTCTCTTCCTCCTCCGTCGCGGCGACGACGTGTTGGCCGAGGATTTG
ATGGTGCAGGTAGG
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protein sequence of rna5515

>rna5515-protein ID=rna5515-protein|Name=rna5515|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
SGGHGKGRRVAPGTSLAPRGRGPRVPFRRCFSYLRPRRPPPVMEGGGVAT
VTSGTPKRKKPPSRDGGKGKALLTGRAGSFSTPRARVALPRAMATALFLP
YVSSRPSLALCPLLLFPFSSGCRPRFPFNSPNFNRFLAFRAPSFSSLSPP
PLPLPNSLPVSAITGPLRPTSLVGTLNFLLRFLGLLAPEKCPQQSKQLQA
LVTLTAALVKAGREGEKEAGGGTAGGDSEMSKGNGAT
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mRNA from alignment at CM002466.1:171826..172655+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5515 ID=rna5515|Name=rna5515|organism=Nannochloropsis gaditana|type=mRNA|length=830bp|location=Sequence derived from alignment at CM002466.1:171826..172655+ (Nannochloropsis gaditana)
AGTGGGgggcatggaaaaggaaggagggtggccCCAGGGACGTCGCTAGC
CCCCAGAGGCCGGGGGCCGCGGGTTCCTTTTCGAaggtgtttctcgtacc
tccggcctcgccgccccccccccgtgatggagggtgggggagtaGCTACC
GTGACATCAGGGACACCCAAAAGGAagaaacctccctcccgcgatggggg
gaaggggaaggccctCTTGACAGGGCGCGCGGGGAGCTTTTCGACTCCTC
GAGCCCGCGTTGCCCTCCCACGAGCCATGGCCACAGCGCTTTTTCTACCC
TACGTGTCGTCTCGCCCCTCTCTGGCGCTCTGTCCTTTGCTCCTGTTTCC
TTTCTCGTCTGGGTGTCGCCCCCGTTTCCCTTTCAATTCGCCCAACTTTA
ATCGTTTCTTGGCATTCCGTGctccgtctttctcctcattgtcccccccc
ccccttcccctccctaaTTCACTTCCTGTGTCAGCCATCACGGGTCCGCT
ACGTCCCACCTCTCTGGTCGGAACCCtcaacttcctcctcagaTTCTTGG
GCCTGCTTGCGCCTGAGAAATGCCCGCAGCAATCCAAGCAATTGCAAGCC
CTGGTGACACTCACAGCGGCGCTTGTCAAggcgggacgggagggggagaa
agaagcaggagggggaacggCGGGCGGCGACTCGGAAATGTCgaaaggaa
atggagcaACATAAAGCTGAAAAAGAATGTAGATGCATCTTCTTGGACCG
GTTGGTCTCTTGTGTTGGTTTAAAAGCAGTTTGCTGAATCCTAATTGTTA
TGCGTGGTTGTAAGGTTCATAAAAAAAGAC
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Coding sequence (CDS) from alignment at CM002466.1:171826..172655+

>rna5515 ID=rna5515|Name=rna5515|organism=Nannochloropsis gaditana|type=CDS|length=714bp|location=Sequence derived from alignment at CM002466.1:171826..172655+ (Nannochloropsis gaditana)
AGTGGGgggcatggaaaaggaaggagggtggccCCAGGGACGTCGCTAGC
CCCCAGAGGCCGGGGGCCGCGGGTTCCTTTTCGAaggtgtttctcgtacc
tccggcctcgccgccccccccccgtgatggagggtgggggagtaGCTACC
GTGACATCAGGGACACCCAAAAGGAagaaacctccctcccgcgatggggg
gaaggggaaggccctCTTGACAGGGCGCGCGGGGAGCTTTTCGACTCCTC
GAGCCCGCGTTGCCCTCCCACGAGCCATGGCCACAGCGCTTTTTCTACCC
TACGTGTCGTCTCGCCCCTCTCTGGCGCTCTGTCCTTTGCTCCTGTTTCC
TTTCTCGTCTGGGTGTCGCCCCCGTTTCCCTTTCAATTCGCCCAACTTTA
ATCGTTTCTTGGCATTCCGTGctccgtctttctcctcattgtcccccccc
ccccttcccctccctaaTTCACTTCCTGTGTCAGCCATCACGGGTCCGCT
ACGTCCCACCTCTCTGGTCGGAACCCtcaacttcctcctcagaTTCTTGG
GCCTGCTTGCGCCTGAGAAATGCCCGCAGCAATCCAAGCAATTGCAAGCC
CTGGTGACACTCACAGCGGCGCTTGTCAAggcgggacgggagggggagaa
agaagcaggagggggaacggCGGGCGGCGACTCGGAAATGTCgaaaggaa
atggagcaACATAA
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Synonyms
Publications