rna5514, rna5514 (mRNA) Nannochloropsis gaditana

Overview
Namerna5514
Unique Namerna5514
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length633
Alignment locationCM002466.1:170825..171239 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101987g1.8727.mrna
Orig protein idgnl|cribi|Naga_101987g1.8727
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:170825..171239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101987g1gene5326Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5514rna5514-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25173.1cds5500Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5514 ID=rna5514|Name=rna5514|organism=Nannochloropsis gaditana|type=mRNA|length=633bp
ATGTTCAAAAAAGCTAGATCTAATTGCCGGTCGCTGCTACCGTGGCCACA
ATCATCGACGGCTCTAAACACAGGACTCCACGATCACGGGTTAGAGATTG
CAGGAGGAAAGTGGGTGGACGGGGCTGGTGAAGAAGACTGGCAAAAAGGG
AGAAAAGTCGTTTTCAGGCGCATGGCCCTCCGGTCCGTGCTCCGTGCTCG
GCATCCAGGGGAGAGAGGAGCTGGTGAAGAGGAAGAAACTCCGGCGTGGG
CTGAGGACAAGCTACCCATCGCGGTGAGCCCGGATGGCCTGCTCTTGTGC
ATCGTCACGGCAAAGCGCTCCCTTGCACTCTATCGACTGGCGCCACCGGC
CTCCTCTTCCTCCTCCTCCCCCTCCTCCTCCTCCCTCTTCTCCTCTTCAC
CTAGTAAATTACACTCGGCAAATGGGAACAGCGCATCGATAGAAGAAGGG
AAAATATCCGGCAACCCCATACCCTCATGCACAGGCGCAGCGACAGCCTC
TTGTGGGGAAGGCATTCGCGTACTGGATTTCGCGGCGGAGGAGGTGGAAG
GAGAGGCGCCGCCGGTGGAGGTTGAGATCACAGCGCTGAAGGTGAGGAGG
GAGGGAGGGAGAAATGGATTTGGTGAAGGATGA
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protein sequence of rna5514

>rna5514-protein ID=rna5514-protein|Name=rna5514|organism=Nannochloropsis gaditana|type=polypeptide|length=66bp
MRRRKRGSRGRRDDDLSFFEVSINWGEGRVNRSTPPPRRWTFPVTGSGHS
TFSSSSVAATTCWPRI
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mRNA from alignment at CM002466.1:170825..171239+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5514 ID=rna5514|Name=rna5514|organism=Nannochloropsis gaditana|type=mRNA|length=415bp|location=Sequence derived from alignment at CM002466.1:170825..171239+ (Nannochloropsis gaditana)
atgcggaggaggaagagaggaagtcgagggaggagggacgacgatctctc
cttcttcgagGTCTCCATCAActggggagaggggcgagtCAAGTGCGTGG
Tccgctctctctccctttcccaccccccccttctttcccttcctcccgcc
ctccttccttccctccttccctccctccccccctctgtccttcctcccgt
cgtttccttcttttccctccctgaaACATCACCGACCaaatcttccttcc
tcccttttcccttcctttctccctcccttcctccctccctcagccggTCT
ACGCCGCCGCCCAGGCGCTGGACGTTCCCTGTGACTGGCTCCGGACACAG
CAcattctcttcctcctccgtcgcggCGACGACGTGTTGGCCGAGGATTT
GATGgtgcaggtagg
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Coding sequence (CDS) from alignment at CM002466.1:170825..171239+

>rna5514 ID=rna5514|Name=rna5514|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002466.1:170825..171239+ (Nannochloropsis gaditana)
atgcggaggaggaagagaggaagtcgagggaggagggacgacgatctctc
cttcttcgagGTCTCCATCAActggggagaggggcgagtCAAccggTCTA
CGCCGCCGCCCAGGCGCTGGACGTTCCCTGTGACTGGCTCCGGACACAGC
AcattctcttcctcctccgtcgcggCGACGACGTGTTGGCCGAGGATTTG
Aatgcggaggaggaagagaggaagtcgagggaggagggacgacgatctct
ccttcttcgagGTCTCCATCAActggggagaggggcgagtCAAccggTCT
ACGCCGCCGCCCAGGCGCTGGACGTTCCCTGTGACTGGCTCCGGACACAG
CAcattctcttcctcctccgtcgcggCGACGACGTGTTGGCCGAGGATTT
GA
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Synonyms
Publications