rna5513, rna5513 (mRNA) Nannochloropsis gaditana

Overview
Namerna5513
Unique Namerna5513
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1383
Alignment locationCM002466.1:166616..167868 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100488g1.3623.mrna
Orig protein idgnl|cribi|Naga_100488g1.3623
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:166616..167868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100488g1gene5325Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5513rna5513-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25174.1cds5499Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5513 ID=rna5513|Name=rna5513|organism=Nannochloropsis gaditana|type=mRNA|length=1383bp
GACGCCATTGTTCACAAGCAGGCAAGATACTTTCCCAGTCCCCCTTGGTA
TTTACGAGGCATTATGCCTCACGTGCGCTATATTGTTACAAAAGAAGTAG
TAATGTCATGCATGAACGTTGATGTTCATTTGTTTTGTCTTTAAAAATTC
TGCATATCCTCGTACATCGTAAAATAAAATGGCACTGCATGCTCTCGATC
ACATCAGACCTCAATGCGCTCGTGGCTACTTAACCTTTAATAAAAAAGCA
TAGGTGCTTGATTGAACGCCGCCACGATGTCCACATGTCAGACTATGGTA
CAAAGTACCGATATGTAAGAGTTTGAGGAGCAACCGGGGAATCTTGAAAA
GCGGCGTAATAAGCAGACCGGTGCACTGCATCAGTCGGATTTCCTCCCGC
ATCCCTCCACCACGTCCAGGACTGAAAGCTCGTCGCATTCGCTCTTCTAT
CTCGCATACATGTATATTAATATACAGACAAATGTCAACATGCGATTTAA
TAAGTGCGTTGGACTCCGCTTGCCCTCTTGTAGACGACTCAAATAAAATC
CTACCCTCCCTTTTCTTTCACCCCACGATTTACCTGTAGGGCTGTGTCAG
GACTGCTTCATCGATACTCGCGGCTCACATTATGACACCAAGACAGGTAC
CTCTGCTGACGCCCGACTCGTGCGGGTGACTAGAGGCGATTGAAAGAGGG
GCTTTAAGGTGCGTAGTAGTACTGCCTCTACACTGTCACCATAGTTCATG
CTTGAGGGGTGAGTAGCTTACTTCAAATTTAGGTAGTTTCTTTCATATGT
ATATTTTGCCAACAAAGCTTTGTAATGTATTTTAGAAGTTGAATACTTCA
AAATGTTGCGGAATGCTCGAAATAAGGCCTTTCAGGGCTGTGTCTGACGC
CACGAGCTCTCGCATGGCTTGGGAAAAGCCTTTTTGAGCCCAAAAATGAT
GTTTTTGCGTGCAAAGGAGCGTAGACATCAGAATCTTGAGAGTGTTAGAT
ACCAAATGGGGACAGAGCCCAGTACAGGGACTTGCCTGTGCCAGCTGAAA
GGAGAGCGCTATACTAGACTAGCTGTTTTCAAGCCAAAAGGGATCTCTGG
GCAAGCTTTCAGATTGCAAAACCCTCCACAAAGCGACGTGGAATGCCCGC
AAGCTCCCCTCGGGCAGAGAATCCTGCCGCCGTCGGATATCGGCTTTAGC
ACGCGACCGTTGGAAGGAGAGGAAAGGCGCCCAATGCCGGTGAGCGAGAG
AACAGAACAAATGCAAAATATAGGGTGTCAAGCGCAGAAGGGTTGCGAGT
TCTTTTTTTGTGGTCTTTTGTTGTTTTGAAAGACGCTCACAGCATTTGCC
AATTCGTAAACCTGGCAAGGGAGTGCGTGAAGG
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protein sequence of rna5513

>rna5513-protein ID=rna5513-protein|Name=rna5513|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MFKKARSNCRSLLPWPQSSTALNTGLHDHGLEIAGGKWVDGAGEEDWQKG
RKVVFRRMALRSVLRARHPGERGAGEEEETPAWAEDKLPIAVSPDGLLLC
IVTAKRSLALYRLAPPASSSSSSPSSSSLFSSSPSKLHSANGNSASIEEG
KISGNPIPSCTGAATASCGEGIRVLDFAAEEVEGEAPPVEVEITALKVRR
EGGRNGFGEG
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mRNA from alignment at CM002466.1:166616..167868+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5513 ID=rna5513|Name=rna5513|organism=Nannochloropsis gaditana|type=mRNA|length=1253bp|location=Sequence derived from alignment at CM002466.1:166616..167868+ (Nannochloropsis gaditana)
ATGTTCAAAAAAGCTAGATCTAATGTTTTATTTTTCCTCAACTCGTTCAA
GGAGGCCCCATATCAAGAAAAGTAGAAGcgcatttttcttcccttttaac
ctcctccctgatACGATCGCCTAAgccgtctttcccccttcagTGCCGGT
CGCTGCTACCGTGGCCACAATCATCGACGGCTCTAAACACAGGACTCCAC
GATCACGGGTTGTAGGTGTAAGCTATACTTGTATCCGATCTTACTAACGC
GTGCTACGTTGGGGGTGCAGTGATTTTCCATTGCGGTAGAATAGCCCGCT
CTGCGACATCATGTTCCCTAAAACCAATTTCCCGTACTCGAACTCAATTA
TTTACGAGTCACACGCATATCCTCATCACACATGCCCACGCAGAGAGAtt
gcaggaggaaagtgggTGGACGGGGCTGGTGAAGAAGACTGgcaaaaagg
gagaaaagtcGTTTTCAGGCGCATGGCCCTCCGGTCCGTGCTCCGTGCTC
GGCATccaggggagagaggagctggtgaagaggaagaaactCCGGCGTGG
GCTGAGGACAAGGTAAGATAGTATTGAAAACTCCTGCATGGGGTGACGAG
GGGAGGCTAGGGATGAGAGTAAAAGGGGTGCTTTCCCGACGACCGGGAAG
GAttgaggaggtgggagggaaggagaggggtgccGGCAACTAAGGAATTT
GAAAAGAAGGATCAAGCCTTGACCGTAAGAGTGACATTGAGTGGAACGCG
GCTTAATGGCTGCTTGGGGTGATTTGTACGCGTTTGTCGATTGTTTTCCG
TGCGTCTCTCGCAGTCATGTTAATCTTCAAAAGAGGATTAATTTATTTCC
GAATCTCTATTTTTCGGGGGAACGTTTCCAGCTACCCATCGCGGTGAGCC
CGGATGGCCTGCTCTTGTGCATCGTCACGGCAAAGCGCTCCCTTGCACTC
TATCGACTGGCGCCaccggcctcctcttcctcctcctccccctcctcctc
ctccctcttctcctcttcacctAGTAAATTACACTCGGCAAATGGGAACA
GCGCATCGAtagaagaagggaaaatatCCGGCAACCCCATACCCTCATGC
ACAGGCGCAGCGACAGCCTCTTGTGGGGAAGGCATTCGCGTACTGGATTt
cgcggcggaggaggtggaaggagaggcgccgCCGGTGGAGGTTGAGATCA
CAGCGctgaaggtgaggagggagggagggagaaatggatTTGGTGAAGGA
TGA
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Coding sequence (CDS) from alignment at CM002466.1:166616..167868+

>rna5513 ID=rna5513|Name=rna5513|organism=Nannochloropsis gaditana|type=CDS|length=2532bp|location=Sequence derived from alignment at CM002466.1:166616..167868+ (Nannochloropsis gaditana)
ATGTTCAAAAAAGCTAGATCTAATTGCCGGTCGCTGCTACCGTGGCCACA
ATCATCGACGGCTCTAAACACAGGACTCCACGATCACGGGTTAGAGAttg
caggaggaaagtgggTGGACGGGGCTGGTGAAGAAGACTGgcaaaaaggg
agaaaagtcGTTTTCAGGCGCATGGCCCTCCGGTCCGTGCTCCGTGCTCG
GCATccaggggagagaggagctggtgaagaggaagaaactCCGGCGTGGG
CTGAGGACAAGCTACCCATCGCGGTGAGCCCGGATGGCCTGCTCTTGTGC
ATCGTCACGGCAAAGCGCTCCCTTGCACTCTATCGACTGGCGCCaccggc
ctcctcttcctcctcctccccctcctcctcctccctcttctcctcttcac
ctAGTAAATTACACTCGGCAAATGGGAACAGCGCATCGAtagaagaaggg
aaaatatCCGGCAACCCCATACCCTCATGCACAGGCGCAGCGACAGCCTC
TTGTGGGGAAGGCATTCGCGTACTGGATTtcgcggcggaggaggtggaag
gagaggcgccgCCGGTGGAGGTTGAGATCACAGCGctgaaggtgaggagg
gagggagggagaaatggatTTGGTGAAGGATGAATGTTCAAAAAAGCTAG
ATCTAATTGCCGGTCGCTGCTACCGTGGCCACAATCATCGACGGCTCTAA
ACACAGGACTCCACGATCACGGGTTAGAGAttgcaggaggaaagtgggTG
GACGGGGCTGGTGAAGAAGACTGgcaaaaagggagaaaagtcGTTTTCAG
GCGCATGGCCCTCCGGTCCGTGCTCCGTGCTCGGCATccaggggagagag
gagctggtgaagaggaagaaactCCGGCGTGGGCTGAGGACAAGCTACCC
ATCGCGGTGAGCCCGGATGGCCTGCTCTTGTGCATCGTCACGGCAAAGCG
CTCCCTTGCACTCTATCGACTGGCGCCaccggcctcctcttcctcctcct
ccccctcctcctcctccctcttctcctcttcacctAGTAAATTACACTCG
GCAAATGGGAACAGCGCATCGAtagaagaagggaaaatatCCGGCAACCC
CATACCCTCATGCACAGGCGCAGCGACAGCCTCTTGTGGGGAAGGCATTC
GCGTACTGGATTtcgcggcggaggaggtggaaggagaggcgccgCCGGTG
GAGGTTGAGATCACAGCGctgaaggtgaggagggagggagggagaaatgg
atTTGGTGAAGGATGAATGTTCAAAAAAGCTAGATCTAATTGCCGGTCGC
TGCTACCGTGGCCACAATCATCGACGGCTCTAAACACAGGACTCCACGAT
CACGGGTTAGAGAttgcaggaggaaagtgggTGGACGGGGCTGGTGAAGA
AGACTGgcaaaaagggagaaaagtcGTTTTCAGGCGCATGGCCCTCCGGT
CCGTGCTCCGTGCTCGGCATccaggggagagaggagctggtgaagaggaa
gaaactCCGGCGTGGGCTGAGGACAAGCTACCCATCGCGGTGAGCCCGGA
TGGCCTGCTCTTGTGCATCGTCACGGCAAAGCGCTCCCTTGCACTCTATC
GACTGGCGCCaccggcctcctcttcctcctcctccccctcctcctcctcc
ctcttctcctcttcacctAGTAAATTACACTCGGCAAATGGGAACAGCGC
ATCGAtagaagaagggaaaatatCCGGCAACCCCATACCCTCATGCACAG
GCGCAGCGACAGCCTCTTGTGGGGAAGGCATTCGCGTACTGGATTtcgcg
gcggaggaggtggaaggagaggcgccgCCGGTGGAGGTTGAGATCACAGC
GctgaaggtgaggagggagggagggagaaatggatTTGGTGAAGGATGAA
TGTTCAAAAAAGCTAGATCTAATTGCCGGTCGCTGCTACCGTGGCCACAA
TCATCGACGGCTCTAAACACAGGACTCCACGATCACGGGTTAGAGAttgc
aggaggaaagtgggTGGACGGGGCTGGTGAAGAAGACTGgcaaaaaggga
gaaaagtcGTTTTCAGGCGCATGGCCCTCCGGTCCGTGCTCCGTGCTCGG
CATccaggggagagaggagctggtgaagaggaagaaactCCGGCGTGGGC
TGAGGACAAGCTACCCATCGCGGTGAGCCCGGATGGCCTGCTCTTGTGCA
TCGTCACGGCAAAGCGCTCCCTTGCACTCTATCGACTGGCGCCaccggcc
tcctcttcctcctcctccccctcctcctcctccctcttctcctcttcacc
tAGTAAATTACACTCGGCAAATGGGAACAGCGCATCGAtagaagaaggga
aaatatCCGGCAACCCCATACCCTCATGCACAGGCGCAGCGACAGCCTCT
TGTGGGGAAGGCATTCGCGTACTGGATTtcgcggcggaggaggtggaagg
agaggcgccgCCGGTGGAGGTTGAGATCACAGCGctgaaggtgaggaggg
agggagggagaaatggatTTGGTGAAGGATGA
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Synonyms
Publications