EWM25174.1, cds5499 (CDS) Nannochloropsis gaditana

Overview
NameEWM25174.1
Unique Namecds5499
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:166616..166639 +
Alignment locationCM002466.1:166759..166826 +
Alignment locationCM002466.1:167009..167177 +
Alignment locationCM002466.1:167497..167868 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25174.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100488g1.3623.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:166616..166639 +
CM002466.1supercontigCM002466.1:166759..166826 +
CM002466.1supercontigCM002466.1:167009..167177 +
CM002466.1supercontigCM002466.1:167497..167868 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25174.1 vs. NCBI_GenBank
Match: gi|585106825|gb|EWM25174.1| (hypothetical protein Naga_100488g1 [Nannochloropsis gaditana])

HSP 1 Score: 420.624 bits (1080), Expect = 1.101e-148
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0 
Query:    1 MFKKARSNCRSLLPWPQSSTALNTGLHDHGLEIAGGKWVDGAGEEDWQKGRKVVFRRMALRSVLRARHPGERGAGEEEETPAWAEDKLPIAVSPDGLLLCIVTAKRSLALYRLAPPASSSSSSPSSSSLFSSSPSKLHSANGNSASIEEGKISGNPIPSCTGAATASCGEGIRVLDFAAEEVEGEAPPVEVEITALKVRREGGRNGFGEG 210
            MFKKARSNCRSLLPWPQSSTALNTGLHDHGLEIAGGKWVDGAGEEDWQKGRKVVFRRMALRSVLRARHPGERGAGEEEETPAWAEDKLPIAVSPDGLLLCIVTAKRSLALYRLAPPASSSSSSPSSSSLFSSSPSKLHSANGNSASIEEGKISGNPIPSCTGAATASCGEGIRVLDFAAEEVEGEAPPVEVEITALKVRREGGRNGFGEG
Sbjct:    1 MFKKARSNCRSLLPWPQSSTALNTGLHDHGLEIAGGKWVDGAGEEDWQKGRKVVFRRMALRSVLRARHPGERGAGEEEETPAWAEDKLPIAVSPDGLLLCIVTAKRSLALYRLAPPASSSSSSPSSSSLFSSSPSKLHSANGNSASIEEGKISGNPIPSCTGAATASCGEGIRVLDFAAEEVEGEAPPVEVEITALKVRREGGRNGFGEG 210
[Close]
BLAST of EWM25174.1 vs. NCBI_GenBank
Match: gi|553179338|ref|XP_005852685.1| (hypothetical protein NGA_0708100, partial [Nannochloropsis gaditana CCMP526] >gi|422295848|gb|EKU23147.1| hypothetical protein NGA_0708100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 273.092 bits (697), Expect = 2.202e-91
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0 
Query:   58 MALRSVLRARHPGERGAGEEEETPAWAEDKLPIAVSPDGLLLCIVTAKRSLALYRLAPPASSSSSSPSSSSLFSSSPSKLHSANGNSASIEEGKISGNPIPSCTGAATASCGEGIRVLDFAAEEVEGEAPPVEVEITALKV 198
            MALRSVLRARHPGERGAGEEEETPAWAEDKLPIAVSPDGLLLCIVTAKRSLALYRLAPPASSSSSSPSSSSLFSSSPS+LHSANGNSASIEEGKISGNPIPSCTGAATASCGEGIRVLDFAAEEVEGEAPPVEVEITALKV
Sbjct:    1 MALRSVLRARHPGERGAGEEEETPAWAEDKLPIAVSPDGLLLCIVTAKRSLALYRLAPPASSSSSSPSSSSLFSSSPSQLHSANGNSASIEEGKISGNPIPSCTGAATASCGEGIRVLDFAAEEVEGEAPPVEVEITALKV 141
The following BLAST results are available for this feature:
BLAST of EWM25174.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106825|gb|EWM25174.1|1.101e-148100.00hypothetical protein Naga_100488g1 [Nannochloropsi... [more]
gi|553179338|ref|XP_005852685.1|2.202e-9199.29hypothetical protein NGA_0708100, partial [Nannoch... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5513rna5513Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications