rna5511, rna5511 (mRNA) Nannochloropsis gaditana

Overview
Namerna5511
Unique Namerna5511
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length625
Alignment locationCM002466.1:157601..158159 -

Link to JBrowse

Properties
Property NameValue
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Orig transcript idgnl|cribi|Naga_102438g1.2592.mrna
Orig protein idgnl|cribi|Naga_102438g1.2592
GeneHDS
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:157601..158159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
HDSgene5323Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25176.1cds5497Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5511rna5511-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5511 ID=rna5511|Name=rna5511|organism=Nannochloropsis gaditana|type=mRNA|length=625bp
AACATTTTAGATGAACCGCCACACCGAAGAATCCCACCAGCGGAGGAAAG
TATCTTACCTTATCACCGCAGCATTCCATTGTCTCCAATTCTCACGGGCT
CTGGCTTCGCATGTCGAACGTGATATTCACAGGCACAGCTTTGCTACCAA
GGATAAACTAGACTCACATCCTCCAGAGGATACGTCGTGGCGATTTTTAT
TTCAGGAAGTTTTTAATTGCTTTCTTCTTTTTCTGATAGCGGATATGCCT
GTTCCTGCCGATGTTGACGGGAAGGAAGTAACGCGCGCATCCGATGCTTC
CAATCAAGGTGCGTACTCCTATTTTGCATGCGTAGCTTACTCATATATTG
ATTGTTCAAGTTCAGGTTCCTGCTCAGATCTTAATTTTTTCTCAGTCTCT
ATCGCAACTACCTCTCTGGTGTGCGGTGTGATATTCGAATCCCTTTCCAT
TCCGTACTTTTCGTGATCGTAGTCTATCTGAGCATGCCATGCTGAAATTA
ACCTACAATTTATCAAAATATGTGACCCCATCGTTAGAGACCTGAAAATT
TCCATCCAATGACATTCCATGTACGGATCAATATTTATTCTTCGTCAGCC
CCGAAAGCTCGGAAGACAAACTCCC
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protein sequence of rna5511

>rna5511-protein ID=rna5511-protein|Name=rna5511|organism=Nannochloropsis gaditana|type=polypeptide|length=171bp
PSGLQDRRGACPSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLL
SPASTLTATPVPNAIAVYDLAASLPRPSLPPSPGGSLRRHALGEGDGGGT
QETKGSFTGDGALGDRSVLEPRACVEAVDGVDRARGPELSRHPPLHFGGR
EGGKDGGREGRRGEYEDALVT
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mRNA from alignment at CM002466.1:157601..158159-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5511 ID=rna5511|Name=rna5511|organism=Nannochloropsis gaditana|type=mRNA|length=559bp|location=Sequence derived from alignment at CM002466.1:157601..158159- (Nannochloropsis gaditana)
CCCTCAGGGCTGCAAGACCGCCGTGGGGCGTGCCCTTCAAAAGACATCGC
CACCAGCGACTCCCTCTTCCTCCGCCAGCCCCCTCCTGTGGACGACAAGG
AGGGACGCGCGGCCCTCCGCCGCCTCCAGGAGAGCGGCCTGGGCCTCCTC
TCCCCTGCCTCCACCCTCACCGCCACCCCCGTGCCCAACGCCATCGCCGT
CTACGACCTGGCCGCCTCCCTCCCTCGGCCCTCCCTCCCTCCCTCCCCAG
GCGGCTCGCTACGCCGTCACGCTCTCGGGGAAGGAGACGGAGGAGGAACT
CAAGAAACTAAAGGAAGCTTCACCGGTGATGGTGCTCTTGGCGATCGATC
CGTCCTTGAGCCGCGTGCATGCGTCGAGGCGGTTGATGGAGTGGATCGTG
CGCGAGGGCCTGAGCTTTCCCGTCATCCACCACTTCATTTCGGAGGTAGG
GAGGGAGGGAAGGACGGAGGGAGGGAGGGACGGAGGGGGGAATACGAAGA
CGCGTTGGTGACGTAGAGCGTGCTGTCGTCTGCAACTGCTTGACCCACGC
CACCCTCCC
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Coding sequence (CDS) from alignment at CM002466.1:157601..158159-

>rna5511 ID=rna5511|Name=rna5511|organism=Nannochloropsis gaditana|type=CDS|length=516bp|location=Sequence derived from alignment at CM002466.1:157601..158159- (Nannochloropsis gaditana)
CCCTCAGGGCTGCAAGACCGCCGTGGGGCGTGCCCTTCAAAAGACATCGC
CACCAGCGACTCCCTCTTCCTCCGCCAGCCCCCTCCTGTGGACGACAAGG
AGGGACGCGCGGCCCTCCGCCGCCTCCAGGAGAGCGGCCTGGGCCTCCTC
TCCCCTGCCTCCACCCTCACCGCCACCCCCGTGCCCAACGCCATCGCCGT
CTACGACCTGGCCGCCTCCCTCCCTCGGCCCTCCCTCCCTCCCTCCCCAG
GCGGCTCGCTACGCCGTCACGCTCTCGGGGAAGGAGACGGAGGAGGAACT
CAAGAAACTAAAGGAAGCTTCACCGGTGATGGTGCTCTTGGCGATCGATC
CGTCCTTGAGCCGCGTGCATGCGTCGAGGCGGTTGATGGAGTGGATCGTG
CGCGAGGGCCTGAGCTTTCCCGTCATCCACCACTTCATTTCGGAGGTAGG
GAGGGAGGGAAGGACGGAGGGAGGGAGGGACGGAGGGGGGAATACGAAGA
CGCGTTGGTGACGTAG
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Synonyms
Publications