EWM25176.1, cds5497 (CDS) Nannochloropsis gaditana

Overview
NameEWM25176.1
Unique Namecds5497
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:157644..158159 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25176.1
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Partialtrue
Orig transcript idgnl|cribi|Naga_102438g1.2592.mrna
GeneHDS
GbkeyCDS
End range.
End range158159
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:157644..158159 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|585106829|gb|EWM25176.1| (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, partial [Nannochloropsis gaditana])

HSP 1 Score: 330.872 bits (847), Expect = 1.445e-114
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
Query:    1 PSGLQDRRGACPSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAASLPRPSLPPSPGGSLRRHALGEGDGGGTQETKGSFTGDGALGDRSVLEPRACVEAVDGVDRARGPELSRHPPLHFGGREGGKDGGREGRRGEYEDALVT 171
            PSGLQDRRGACPSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAASLPRPSLPPSPGGSLRRHALGEGDGGGTQETKGSFTGDGALGDRSVLEPRACVEAVDGVDRARGPELSRHPPLHFGGREGGKDGGREGRRGEYEDALVT
Sbjct:    1 PSGLQDRRGACPSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAASLPRPSLPPSPGGSLRRHALGEGDGGGTQETKGSFTGDGALGDRSVLEPRACVEAVDGVDRARGPELSRHPPLHFGGREGGKDGGREGRRGEYEDALVT 171          
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|551676711|ref|XP_005841109.1| (hypothetical protein GUITHDRAFT_63981 [Guillardia theta CCMP2712] >gi|428185276|gb|EKX54129.1| hypothetical protein GUITHDRAFT_63981 [Guillardia theta CCMP2712])

HSP 1 Score: 78.1814 bits (191), Expect = 8.847e-14
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 0
Query:   12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDL 70
            P KD+ATSDS+ L+Q P +D  + R ALRRLQE G+G+L PA  L A P+PNAIAVYDL
Sbjct:  379 PFKDLATSDSILLQQSPAMDASKERTALRRLQEVGVGVLCPAQELQARPIPNAIAVYDL 437          
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|298708973|emb|CBJ30926.1| (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 73.9442 bits (180), Expect = 2.452e-12
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 0
Query:   12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDL 70
            P KDIAT+DS++L Q P  DDK+ R +LRR+QE+G+G+L+P + L A P+ NA+AV  L
Sbjct:  391 PFKDIATTDSVYLEQVPATDDKKARTSLRRMQEAGVGVLAPLAALEANPIANAVAVVSL 449          
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|55792582|gb|AAV65384.1| (plastid hydroxymethylbutenyl 4-diphosphate synthase, partial [Prototheca wickerhamii])

HSP 1 Score: 70.0922 bits (170), Expect = 8.640e-12
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 0
Query:   12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAASLP-----RPSLPP 81
            P KDIATSDS++L + P VDD   R ALRRLQE G+ +L+ A  L A+P+P++IAV  LA ++      R  LPP
Sbjct:   35 PFKDIATSDSVYLTEVPAVDDAVARRALRRLQEVGVHVLAEADALVASPLPDSIAVVSLAEAVAAAREGRSLLPP 109          
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|612390679|ref|XP_007510861.1| (predicted protein [Bathycoccus prasinos] >gi|412991022|emb|CCO18394.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 72.0182 bits (175), Expect = 1.482e-11
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 0
Query:   12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAASLPRPSLP 80
            P +DIATSDS+ LRQ P    ++   ++RRLQE G G+L P + L   PVPNAIA+  LA ++ + +LP
Sbjct:  445 PLRDIATSDSILLRQAPQASQEKAMRSIRRLQEIGCGVLVPEAELKKNPVPNAIAIVSLAQAIAKEALP 513          
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|926790729|ref|XP_013903838.1| (hypothetical protein MNEG_3143 [Monoraphidium neglectum] >gi|761974771|gb|KIZ04819.1| hypothetical protein MNEG_3143 [Monoraphidium neglectum])

HSP 1 Score: 71.2478 bits (173), Expect = 2.119e-11
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 0
Query:   12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDL 70
            P KDIATSD++F+R+ PP  DKEGR ALRRLQE G+ ++SPA+TL   P+  A+A+  L
Sbjct:  235 PFKDIATSDAIFMRELPPSSDKEGRRALRRLQEVGVHVISPAATLAVDPLEGAVALVPL 293          
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|219116532|ref|XP_002179061.1| (1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase [Phaeodactylum tricornutum CCAP 1055/1] >gi|209402469|gb|ACI45957.1| putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase precursor [Phaeodactylum tricornutum] >gi|217409828|gb|EEC49759.1| 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 70.8626 bits (172), Expect = 2.996e-11
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0
Query:   12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAASLPR 76
            P KD+AT+DS+F+R  PP  D E R ALRRL E  +G++ PA  L   P+PNA+A+ DL  ++ +
Sbjct:  448 PFKDVATTDSIFMRTVPPSSDTESRTALRRLIEVNMGVVVPAEVLEKDPLPNAVALMDLTDAIAK 512          
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|552832714|ref|XP_005848392.1| (hypothetical protein CHLNCDRAFT_144676 [Chlorella variabilis] >gi|307108049|gb|EFN56290.1| hypothetical protein CHLNCDRAFT_144676 [Chlorella variabilis])

HSP 1 Score: 69.707 bits (169), Expect = 9.623e-11
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 0
Query:   12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAAS 73
            P KDIAT+D++ + Q P   D EGR ALRRLQE G+ +++PA  L A P+P+A+AV  LA +
Sbjct:  399 PFKDIATADTILMYQTPSSSDTEGRRALRRLQEVGVHVMAPAEVLAADPLPDAVAVMQLAVA 460          
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|112258871|gb|ABG75916.2| ((E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase [Stevia rebaudiana])

HSP 1 Score: 68.9366 bits (167), Expect = 1.779e-10
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 0
Query:   12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDL 70
            P KD+AT DS+FLR+ PPVDDK+ R AL+RL +  +G+++P S     P+PNAI + +L
Sbjct:  442 PFKDLATVDSIFLRELPPVDDKDARLALKRLIDVSMGVITPLSEQLTKPLPNAIVLVNL 500          
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|395786976|gb|AFN70969.1| (hydroxymethyl butenyl diphosphate synthase, partial [Picrorhiza kurrooa])

HSP 1 Score: 64.6994 bits (156), Expect = 1.867e-10
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 0
Query:   11 CPSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDL 70
             P KD+AT DS+ LR+ PPVDDK+ R AL+RL +  +G+++P S     P+PNA+A+  L
Sbjct:    1 MPFKDLATVDSILLRELPPVDDKDARLALKRLIDISMGVITPLSEQLTKPLPNALAMVTL 60          
The following BLAST results are available for this feature:
BLAST of EWM25176.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106829|gb|EWM25176.1|1.445e-114100.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
gi|551676711|ref|XP_005841109.1|8.847e-1462.71hypothetical protein GUITHDRAFT_63981 [Guillardia ... [more]
gi|298708973|emb|CBJ30926.1|2.452e-1254.241-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate syn... [more]
gi|55792582|gb|AAV65384.1|8.640e-1250.67plastid hydroxymethylbutenyl 4-diphosphate synthas... [more]
gi|612390679|ref|XP_007510861.1|1.482e-1147.83predicted protein [Bathycoccus prasinos] >gi|41299... [more]
gi|926790729|ref|XP_013903838.1|2.119e-1157.63hypothetical protein MNEG_3143 [Monoraphidium negl... [more]
gi|219116532|ref|XP_002179061.1|2.996e-1147.691-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate syn... [more]
gi|552832714|ref|XP_005848392.1|9.623e-1151.61hypothetical protein CHLNCDRAFT_144676 [Chlorella ... [more]
gi|112258871|gb|ABG75916.2|1.779e-1050.85(E)-4-hydroxy-3-methylbut-2-enyl diphosphate synth... [more]
gi|395786976|gb|AFN70969.1|1.867e-1048.33hydroxymethyl butenyl diphosphate synthase, partia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5511rna5511Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications