EWM25176.1, cds5497 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|585106829|gb|EWM25176.1| (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, partial [Nannochloropsis gaditana]) HSP 1 Score: 330.872 bits (847), Expect = 1.445e-114 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
Query: 1 PSGLQDRRGACPSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAASLPRPSLPPSPGGSLRRHALGEGDGGGTQETKGSFTGDGALGDRSVLEPRACVEAVDGVDRARGPELSRHPPLHFGGREGGKDGGREGRRGEYEDALVT 171
PSGLQDRRGACPSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAASLPRPSLPPSPGGSLRRHALGEGDGGGTQETKGSFTGDGALGDRSVLEPRACVEAVDGVDRARGPELSRHPPLHFGGREGGKDGGREGRRGEYEDALVT
Sbjct: 1 PSGLQDRRGACPSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAASLPRPSLPPSPGGSLRRHALGEGDGGGTQETKGSFTGDGALGDRSVLEPRACVEAVDGVDRARGPELSRHPPLHFGGREGGKDGGREGRRGEYEDALVT 171
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|551676711|ref|XP_005841109.1| (hypothetical protein GUITHDRAFT_63981 [Guillardia theta CCMP2712] >gi|428185276|gb|EKX54129.1| hypothetical protein GUITHDRAFT_63981 [Guillardia theta CCMP2712]) HSP 1 Score: 78.1814 bits (191), Expect = 8.847e-14 Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 0
Query: 12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDL 70
P KD+ATSDS+ L+Q P +D + R ALRRLQE G+G+L PA L A P+PNAIAVYDL
Sbjct: 379 PFKDLATSDSILLQQSPAMDASKERTALRRLQEVGVGVLCPAQELQARPIPNAIAVYDL 437
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|298708973|emb|CBJ30926.1| (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, chloroplast precursor [Ectocarpus siliculosus]) HSP 1 Score: 73.9442 bits (180), Expect = 2.452e-12 Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 0
Query: 12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDL 70
P KDIAT+DS++L Q P DDK+ R +LRR+QE+G+G+L+P + L A P+ NA+AV L
Sbjct: 391 PFKDIATTDSVYLEQVPATDDKKARTSLRRMQEAGVGVLAPLAALEANPIANAVAVVSL 449
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|55792582|gb|AAV65384.1| (plastid hydroxymethylbutenyl 4-diphosphate synthase, partial [Prototheca wickerhamii]) HSP 1 Score: 70.0922 bits (170), Expect = 8.640e-12 Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 0
Query: 12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAASLP-----RPSLPP 81
P KDIATSDS++L + P VDD R ALRRLQE G+ +L+ A L A+P+P++IAV LA ++ R LPP
Sbjct: 35 PFKDIATSDSVYLTEVPAVDDAVARRALRRLQEVGVHVLAEADALVASPLPDSIAVVSLAEAVAAAREGRSLLPP 109
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|612390679|ref|XP_007510861.1| (predicted protein [Bathycoccus prasinos] >gi|412991022|emb|CCO18394.1| predicted protein [Bathycoccus prasinos]) HSP 1 Score: 72.0182 bits (175), Expect = 1.482e-11 Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 0
Query: 12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAASLPRPSLP 80
P +DIATSDS+ LRQ P ++ ++RRLQE G G+L P + L PVPNAIA+ LA ++ + +LP
Sbjct: 445 PLRDIATSDSILLRQAPQASQEKAMRSIRRLQEIGCGVLVPEAELKKNPVPNAIAIVSLAQAIAKEALP 513
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|926790729|ref|XP_013903838.1| (hypothetical protein MNEG_3143 [Monoraphidium neglectum] >gi|761974771|gb|KIZ04819.1| hypothetical protein MNEG_3143 [Monoraphidium neglectum]) HSP 1 Score: 71.2478 bits (173), Expect = 2.119e-11 Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 0
Query: 12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDL 70
P KDIATSD++F+R+ PP DKEGR ALRRLQE G+ ++SPA+TL P+ A+A+ L
Sbjct: 235 PFKDIATSDAIFMRELPPSSDKEGRRALRRLQEVGVHVISPAATLAVDPLEGAVALVPL 293
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|219116532|ref|XP_002179061.1| (1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase [Phaeodactylum tricornutum CCAP 1055/1] >gi|209402469|gb|ACI45957.1| putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase precursor [Phaeodactylum tricornutum] >gi|217409828|gb|EEC49759.1| 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 70.8626 bits (172), Expect = 2.996e-11 Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0
Query: 12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAASLPR 76
P KD+AT+DS+F+R PP D E R ALRRL E +G++ PA L P+PNA+A+ DL ++ +
Sbjct: 448 PFKDVATTDSIFMRTVPPSSDTESRTALRRLIEVNMGVVVPAEVLEKDPLPNAVALMDLTDAIAK 512
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|552832714|ref|XP_005848392.1| (hypothetical protein CHLNCDRAFT_144676 [Chlorella variabilis] >gi|307108049|gb|EFN56290.1| hypothetical protein CHLNCDRAFT_144676 [Chlorella variabilis]) HSP 1 Score: 69.707 bits (169), Expect = 9.623e-11 Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 0
Query: 12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDLAAS 73
P KDIAT+D++ + Q P D EGR ALRRLQE G+ +++PA L A P+P+A+AV LA +
Sbjct: 399 PFKDIATADTILMYQTPSSSDTEGRRALRRLQEVGVHVMAPAEVLAADPLPDAVAVMQLAVA 460
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|112258871|gb|ABG75916.2| ((E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase [Stevia rebaudiana]) HSP 1 Score: 68.9366 bits (167), Expect = 1.779e-10 Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 0
Query: 12 PSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDL 70
P KD+AT DS+FLR+ PPVDDK+ R AL+RL + +G+++P S P+PNAI + +L
Sbjct: 442 PFKDLATVDSIFLRELPPVDDKDARLALKRLIDVSMGVITPLSEQLTKPLPNAIVLVNL 500
BLAST of EWM25176.1 vs. NCBI_GenBank
Match: gi|395786976|gb|AFN70969.1| (hydroxymethyl butenyl diphosphate synthase, partial [Picrorhiza kurrooa]) HSP 1 Score: 64.6994 bits (156), Expect = 1.867e-10 Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 0
Query: 11 CPSKDIATSDSLFLRQPPPVDDKEGRAALRRLQESGLGLLSPASTLTATPVPNAIAVYDL 70
P KD+AT DS+ LR+ PPVDDK+ R AL+RL + +G+++P S P+PNA+A+ L
Sbjct: 1 MPFKDLATVDSILLRELPPVDDKDARLALKRLIDISMGVITPLSEQLTKPLPNALAMVTL 60 The following BLAST results are available for this feature:
BLAST of EWM25176.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|