rna551, rna551 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna551
Unique Name	rna551
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1442
Alignment location	CM002455.1:1374217..1376217 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100994g2.6016.mrna
Orig protein id	gnl\|cribi\|Naga_100994g2.6016
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1374217..1376217 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100994g2	gene532	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30122.1	cds551	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna551	rna551-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1374217..1376217-
coding sequence from alignment at CM002455.1:1374217..1376217-

mRNA sequence

>rna551 ID=rna551|Name=rna551|organism=Nannochloropsis gaditana|type=mRNA|length=1442bp
GACGGGGTAGCACGTGCTGTAGGATGGCACGGTGTCAGGGGAGGTATCTC
TATGCGTGTTCAGGCTCTGGACGTAAGGAGGGAAGGAAAATTCAGGAGGA
AATCGGGTGCATCCGGGGAAGGAAATGGAGGCGTCTGACGCGGGGAGAGG
GAATTTGTTGCGCTTGGACTGATGCTTGTTCGACCCTGAATTTTGTGCTT
GGCACGGGCGGTCAGCGGTGTATAAACGGGTACCTGAATGTCGCATTTGG
ATCAGGCCTATGCCGGGCTCGCTGAAAGGCGAAGAAGGAAACTGTCCGTC
ATTCGTCATCCCCATTCCAGCATCGGAAGACGCGTCTCTGTGCCAAGAGC
GTTCACGTTGCGTTTTTTCGTCCTGGACCCCACTCATTTTAGCCCTCCCG
CCCTCCCTTCCTCTTTCCCAAACACCCCCCCATCCACCCAGACAAAGACA
CTTGGTGGCCTTCAACTTTCAAACTCCACAACAGCCCCAGCCGCCGTGGT
CGCAGAGGATGCAGGGATGCGATTCGCACGCCTCAGGGGGAGGGGATGTA
GGGAGGGCGGAGGAAAGGAAGGGGCAGAAGCGGGCGCGGGCGGGTCGAGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGACAGTAGGGGAGG
AAGAGGAGGAGGAAGACTTGTACGCCTTTTTAGAGACGGAAGACACGCAC
TCCCCGCCTTCCCCCCTGCCCACCTCGTCCTCGTCTCCCCTCCCCCTCCC
TCCTCATCACCCTCGCCCTGCCCCCGCACCTGCCGCCCCTCCCATTCCTC
ACCTTCCCCGCCGGGGTCCCGACAAGTCGTTGAACTTCCTCTTCCAGGCC
TTGGTGGGGCGCAAGGTCCTGGTGGAGCTCAAGACGGATGCCGAGGCCCG
TGGGGTCCTGGAAGAGGCCGACGACAACATGAACCTCACCTTAACCGAGG
CCGAGCACATCTCTCCCACCGGCGCCACGACCCCGCACCTCCTTCCCTAC
CTCTACCTCCACGGCAGCTGCATCCGTTACGTCCATCTTTCCCCCCACCT
AGACCTAGACAAGCTGGTGGAGCGACATGCAGTCACCTTAAGTATCCAAG
CGAAACGGTTCCAACGTGCGAGGCTACGACCCGCCCCCTCAGGGCGACAG
CCCCCGGGGGCCAGTACCACCATCCAAGTCCATTTGCCCTTACCCGCAGC
GGAAGCAACCCGGCCGGAATTTTGAATCGACGGTTACTTTTTGGATTTAA
ATCGCGGCCAAACGACGGGGTAGACATGTATGTCTGTGTGCAAAGCAAAA
AAAATGTAGCGGCTACGTCCCGGACCGTATCCAGCGGCCCCGAGCACGCA
ATGACTGCCTCTCCTTGACTCGAGTCGCATGCGGTGCGTGGCGGCGCATG
CAGCCCTCGTGCATTCCAAGGACAACTTTGGGTGGCCGACGA

protein sequence of rna551

>rna551-protein ID=rna551-protein|Name=rna551|organism=Nannochloropsis gaditana|type=polypeptide|length=626bp
MRSWAGQWDFLFLLCIIIVPTSHALVARALSNHPKLATCHHARPRHPSLL
PRSLCASATPSAPASFQLSRDDAALDAFRHWLNVKGGIDLSASSLGLRRL
AHDDENSPGNADLELFTTRPIEKDQILLAIPPSIVLTSELPSPALRDLAG
DAALDDMGRLALRLLHEVSQAGAGSSFQPLLFSHATSSSSFPTLPLDNSG
WLPYVRVLPSRNQMDLPFLWEEDGREGGGEDEGEEDSCGPEDSRDSLLAL
LAPSPLYDDIVALREEMRGELESLRKAVLAHRTLPTSPTILSCLTWENWS
WARAVAMSRPYVLKSRPSRSTEEAGRPDFFGDPVLQLLPLLDMANHDDAI
HYAVQPGDGVFTSREEVQLVADRDYPEVGAPFLSSYGPLSSATKFYSFGF
LDTLSLPPSARSSPPSSLFASRESREDDMPGLVPAQGTALLVLSLDGEGC
TDEGNHKSEKRRSSPEMPEAAKEEMTREERRARNVFGRKLDVLSSMGLKA
EGQRVEISTRTLLKRGLGSERMAATVRMEGGEEEGEGGREDDGGGMDRLR
RYLRLKHMGEEDIDGFLNSPPPRVPLPPPWMKSKSGTVSPLLCLHRRRSR
RLLKPCKSSVRGCKMWKTAGNGSVTG

mRNA from alignment at CM002455.1:1374217..1376217-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna551 ID=rna551|Name=rna551|organism=Nannochloropsis gaditana|type=mRNA|length=2001bp|location=Sequence derived from alignment at CM002455.1:1374217..1376217- (Nannochloropsis gaditana)
ACAGGGGAAGGGCAAGCAAGCTGCACTGGAAAAGAAAAGTGACAATTCCG
GCAAAGCGCTCTCTGCTTTCACATATATATACTACGACCTTGGACGCCTG
AATGCGAAGTTGGGCAGGGCAATGGGACTTCCTCTTTCTGCTCTGTATCA
TAATTGTTCCCACGAGCCATGCTCTTGTCGCAAGGGCCCTTTCGAATCAC
CCAAAACTCGCGACATGCCACCATGCTCGTCCTCGTCATCCCTCCCTTCT
TCCTCGATCCCTGTGTGCATCTGCCACGCCATCGGCCCCCGCATCCTTCC
AACTTTCTCGCGATGACGCGGCACTTGACGCCTTTCGACACTGGTTAAAT
GTGAAGGGAGGCATTGACTTAAGCGCCTCCTCTTTAGGGCTGCGTCGGTT
GGCCCACGACGACGAAAATTCTCCGGGAAATGCCGACCTGGAGCTCTTTA
CGACCCGCCCCATTGAAAAGGATCAGATCCTGCTGGCAATCCCTCCGTCC
ATCGTCCTCACGTCGGAATTGCCCTCTCCTGCGTTGCGCGACCTGGCCGG
CGACGCGGCCCTGGACGATATGGGCCGCTTGGCCTTGCGCCTCCTCCATG
AAGTCAGTCAGGCGGGTGCTGGCTCCTCTTTTCAACCACTCCTCTTCTCC
CACGCAACCTCCTCCTCTTCTTTTCCTACCCTTCCACTGGACAACTCTGG
CTGGTTGCCTTACGTGCGTGTACTTCCTTCCCGTAACCAGATGGATCTTC
CTTTCTTGTGGGAGGAGGACGGGAGGGAGGGAGGGGGAGAGGATGAGGGA
GAGGAAGATTCATGTGGACCTGAAGATTCGCGCGACTCATTACTTGCTCT
CTTGGCCCCTAGCCCCCTCTACGACGACATTGTGGCCCTGCGTGAAGAGA
TGCGAGGCGAGCTGGAAAGTCTTCGCAAAGCCGTGCTCGCCCACCGCACC
CTTCCCACCTCCCCAACCATCCTTTCCTGCTTGACCTGGGAAAATTGGTC
CTGGGCTCGGGCCGTCGCCATGTCTCGTCCCTACGTCTTGAAAAGCCGGC
CGAGCCGAAGTACCGAGGAGGCCGGACGCCCGGACTTTTTCGGCGACCCC
GTGCTTCAACTTCTCCCCTTGCTCGACATGGCCAACCACGATGACGCAAT
ACATTATGCCGTCCAGCCAGGGGATGGGGTCTTCACGTCCCGGGAGGAAG
TGCAGCTGGTGGCGGACCGCGACTACCCGGAGGTAGGGGCGCCTTTTCTC
TCATCCTACGGGCCCTTGTCTTCCGCGACCAAATTCTACTCCTTTGGGTT
CTTGGACACGCTCTCCCTCCCTCCCTCCGCCCGTTCCTCCCCCCCTTCTT
CCCTCTTTGCCTCCCGCGAGTCTCGAGAAGACGACATGCCTGGACTGGTG
CCAGCTCAGGGTACTGCCCTCCTTGTTCTGAGCCTGGACGGTGAAGGCTG
CACCGACGAAGGCAACCACAAAAGCGAAAAACGCCGAAGTTCCCCCGAGA
TGCCGGAGGCAGCGAAGGAGGAGATGACAAGGGAGGAACGAAGAGCACGG
AATGTCTTCGGGCGGAAACTCGACGTATTGAGTTCGATGGGACTCAAGGC
TGAGGGACAACGGGTGGAAATATCGACGCGTACCTTGCTAAAGAGAGGGC
TGGGGTCAGAGAGGATGGCTGCAACAGTCCGTATGGAGGGCGGGGAGGAA
GAGGGGGAGGGAGGGAGGGAAGATGATGGGGGGGGAATGGACCGGCTGCG
ACGCTACCTCCGTCTCAAACATATGGGAGAAGAGGACATTGACGGTTTTT
TAAATTCTCCCCCCCCCCGTGTTCCTCTCCCTCCTCCTTGGATGAAAAGC
AAGTCTGGAACCGTCTCGCCTCTCCTTTGTCTTCACCGACGGAGGTCAAG
GCGGCTGTTGAAGCCTTGCAAATCATCCGTAAGGGGTTGCAAAATGTGGA
AGACCGCTGGGAACGGGTCCGTCACCGGTTGAAGGAGGAAGGGAGGAAGG
G

Coding sequence (CDS) from alignment at CM002455.1:1374217..1376217-

>rna551 ID=rna551|Name=rna551|organism=Nannochloropsis gaditana|type=CDS|length=1881bp|location=Sequence derived from alignment at CM002455.1:1374217..1376217- (Nannochloropsis gaditana)
ATGCGAAGTTGGGCAGGGCAATGGGACTTCCTCTTTCTGCTCTGTATCAT
AATTGTTCCCACGAGCCATGCTCTTGTCGCAAGGGCCCTTTCGAATCACC
CAAAACTCGCGACATGCCACCATGCTCGTCCTCGTCATCCCTCCCTTCTT
CCTCGATCCCTGTGTGCATCTGCCACGCCATCGGCCCCCGCATCCTTCCA
ACTTTCTCGCGATGACGCGGCACTTGACGCCTTTCGACACTGGTTAAATG
TGAAGGGAGGCATTGACTTAAGCGCCTCCTCTTTAGGGCTGCGTCGGTTG
GCCCACGACGACGAAAATTCTCCGGGAAATGCCGACCTGGAGCTCTTTAC
GACCCGCCCCATTGAAAAGGATCAGATCCTGCTGGCAATCCCTCCGTCCA
TCGTCCTCACGTCGGAATTGCCCTCTCCTGCGTTGCGCGACCTGGCCGGC
GACGCGGCCCTGGACGATATGGGCCGCTTGGCCTTGCGCCTCCTCCATGA
AGTCAGTCAGGCGGGTGCTGGCTCCTCTTTTCAACCACTCCTCTTCTCCC
ACGCAACCTCCTCCTCTTCTTTTCCTACCCTTCCACTGGACAACTCTGGC
TGGTTGCCTTACGTGCGTGTACTTCCTTCCCGTAACCAGATGGATCTTCC
TTTCTTGTGGGAGGAGGACGGGAGGGAGGGAGGGGGAGAGGATGAGGGAG
AGGAAGATTCATGTGGACCTGAAGATTCGCGCGACTCATTACTTGCTCTC
TTGGCCCCTAGCCCCCTCTACGACGACATTGTGGCCCTGCGTGAAGAGAT
GCGAGGCGAGCTGGAAAGTCTTCGCAAAGCCGTGCTCGCCCACCGCACCC
TTCCCACCTCCCCAACCATCCTTTCCTGCTTGACCTGGGAAAATTGGTCC
TGGGCTCGGGCCGTCGCCATGTCTCGTCCCTACGTCTTGAAAAGCCGGCC
GAGCCGAAGTACCGAGGAGGCCGGACGCCCGGACTTTTTCGGCGACCCCG
TGCTTCAACTTCTCCCCTTGCTCGACATGGCCAACCACGATGACGCAATA
CATTATGCCGTCCAGCCAGGGGATGGGGTCTTCACGTCCCGGGAGGAAGT
GCAGCTGGTGGCGGACCGCGACTACCCGGAGGTAGGGGCGCCTTTTCTCT
CATCCTACGGGCCCTTGTCTTCCGCGACCAAATTCTACTCCTTTGGGTTC
TTGGACACGCTCTCCCTCCCTCCCTCCGCCCGTTCCTCCCCCCCTTCTTC
CCTCTTTGCCTCCCGCGAGTCTCGAGAAGACGACATGCCTGGACTGGTGC
CAGCTCAGGGTACTGCCCTCCTTGTTCTGAGCCTGGACGGTGAAGGCTGC
ACCGACGAAGGCAACCACAAAAGCGAAAAACGCCGAAGTTCCCCCGAGAT
GCCGGAGGCAGCGAAGGAGGAGATGACAAGGGAGGAACGAAGAGCACGGA
ATGTCTTCGGGCGGAAACTCGACGTATTGAGTTCGATGGGACTCAAGGCT
GAGGGACAACGGGTGGAAATATCGACGCGTACCTTGCTAAAGAGAGGGCT
GGGGTCAGAGAGGATGGCTGCAACAGTCCGTATGGAGGGCGGGGAGGAAG
AGGGGGAGGGAGGGAGGGAAGATGATGGGGGGGGAATGGACCGGCTGCGA
CGCTACCTCCGTCTCAAACATATGGGAGAAGAGGACATTGACGGTTTTTT
AAATTCTCCCCCCCCCCGTGTTCCTCTCCCTCCTCCTTGGATGAAAAGCA
AGTCTGGAACCGTCTCGCCTCTCCTTTGTCTTCACCGACGGAGGTCAAGG
CGGCTGTTGAAGCCTTGCAAATCATCCGTAAGGGGTTGCAAAATGTGGAA
GACCGCTGGGAACGGGTCCGTCACCGGTTGA

Synonyms

Publications