rna5509, rna5509 (mRNA) Nannochloropsis gaditana

Overview
Namerna5509
Unique Namerna5509
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1260
Alignment locationCM002466.1:151618..152543 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100801g1.5524.mrna
Orig protein idgnl|cribi|Naga_100801g1.5524
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:151618..152543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100801g1gene5321Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25177.1cds5495Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5509rna5509-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5509 ID=rna5509|Name=rna5509|organism=Nannochloropsis gaditana|type=mRNA|length=1260bp
AGAGCTGCACAGGATAACGCATGAATGACTCGAAAGAAAGCATCCAGCAG
TCATTCACATATGTATATCTCAGTACACGCGAAAACAGTGTGGGGGGACG
TCCAGAGTCAAGGATGGTGGAATTCTTGCCTCAAAACGCCCCGCTTCTCG
TCATCATTTTGCCGTGGGACCCGTGACCTTACGGATCGAAAAGGATGGCA
AGGGAGGTTAAAATTTACTTGGGTAAGACCCATTTTTCAGGGAAAGAGAG
ACTCATTCACGATCTTCCTTTCACAAACAGGACAGGGGCATGAAATTTTC
TACGAGGACTTCGGTAATCGATGGCTCGGGAATCCTAGACATGCGCAAGC
TCAAAAAGGAGTTGAAAGAAGCCATGGAGGAAGATCATCGACTTTCCTTG
GTGGACGCCGCGAAAAAACGCGCTATACGGACCGTGGGAAGTTATGAGGA
ATTTCAGCATCGGGTTGCCTACGCCCACCTGCGACCACTTTCACGCAAAG
ACATCCAAAATGTGGCCCAAGACACACGAGGATTTTCCAATGCAATTGCG
CGTAAGAATGTCGGGGGACATTATGATGGAGGATGCTTCGATGCGGTGCT
ACGGGAAGGGGGAAAACTAGGCAAGGCCATGCTTTCGGAGCCAAAATTAG
TGAATTGCGAGCGAACCAAGGCGAATTACTTGCGGGAAATTTCTTCTAGA
ACATATCCTACTACCTGTAGTACCAAAATGTCTGCCTTGGGTTTCGAAAA
AGCATGGCAGACATTTATCGATACCCAGGCGTCCCCTCAAGAAAAGCAAC
GTTTCTATCAGGAAGTGGGAGGCTCGACATTCATTGAACGGTGCTTCGTT
GCTCCCGCCAAAGAAATGAGTGCAGAGACGTTGGGGGATATAATTGAGAC
TTTGGCAGAGGCAATTACGATGGAGGAAGGAGGCAAGCGGGAGGACAGCG
CGGAGAATGGACTAGCTCCTGCCTTCAGGGGAGACCTGGTGAGGCTGCTA
TATATCCTACCCGGAATGGGAAGATTCTCAGTCACGTTCGCCCTTCTCAC
TCCAACGCAAGCAACGACGGCCAGGAAGCTGGTTAGGCAGTCGGTGAGAG
AGGAAGGACAGGATAAGGAGGAGGGAAGACAAGGGTTGATGGAGGTGTGG
AGTCCCTACATAGCTTAGAGGAGTGCCCGAAGGCCCCGGGGAGAGAAAAG
CTATGTAGCAACATCAAAGAGGGAATCGAAAAGCCTGAGAAGCAATGCGC
GTGGATGTGT
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protein sequence of rna5509

>rna5509-protein ID=rna5509-protein|Name=rna5509|organism=Nannochloropsis gaditana|type=polypeptide|length=205bp
MPPVLSRPAPMPSETPGSSMTICLRSRLSLLLMMFPALDVAALDASIPLC
FFRLPFHAATTTATPSVSFPFRLLSLTLLTPPSSSSSSFVSTFSPFLFPL
ALYSTPPSTPPTSSPPALSASTALPSEAYRTCRLCLRPYLPSRNHDTACR
YHPSAYIGNERSKFCGTRSGGNERGLARFWDCCGEESVTAPGCQPCPHES
YDEGE
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mRNA from alignment at CM002466.1:151618..152543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5509 ID=rna5509|Name=rna5509|organism=Nannochloropsis gaditana|type=mRNA|length=926bp|location=Sequence derived from alignment at CM002466.1:151618..152543- (Nannochloropsis gaditana)
TTGACAACGGCGACAACTTGGCGTCGTGGATGAACATTGATAAACGACAC
GTGACTTGTTTATCGCCTGGTGATTGTCTGTGGGAGGGATACAAAGCGTT
GTGGGCAGCACTGAGAACTTGATGTAACGCACGTACAAGTCCTTCCTTCG
ACTGCCCCTCCGACTTCAAAGTGCTGGGGATTAGCATCAAGTGGAGTTGC
TCGTTCTATGCACACTTTTTTGCTTATCATTACTAAGCTAAGAAATGACT
TGACGCTTATTGGGCAACAAGCATGCCTCCCCTCGTTCGTGCTTGACCTT
TCGCCCCCATGCCTCCCGTTTTATCCAGGCCAGCCCCAATGCCATCTGAA
ACGCCCGGGTCCTCAATGACCATCTGCCTGCGCTCTCGTTTGTCACTGCT
CCTCATGATGTTCCCAGCTTTAGATGTAGCCGCGCTCGATGCATCTATAC
CCCTTTGCTTCTTCCGATTGCCCTTCCACGCAGCCACCACGACAGCAACC
CCCTCGGTCTCTTTTCCCTTTCGCCTACTTTCTCTTACCCTCTTGACCCC
TCCCTCCTCCTCCTCCTCCTCCTTCGTGTCCACCTTCTCACCCTTTCTCT
TCCCCCTCGCCCTCTACTCCACTCCTCCCTCCACCCCTCCCACGTCCTCC
CCCCCCGCTTTGTCCGCTTCCACTGCCCTCCCTTCCGAAGCCTACCGGAC
CTGCCGCCTCTGTCTCCGCCCCTACCTCCCTTCCCGCAACCACGACACTG
CATGCCGATACCACCCCAGCGCGTACATTGGCAATGAACGGAGCAAATTT
TGCGGTACACGAAGCGGGGGAAACGAGCGCGGCTTGGCCCGGTTTTGGGA
TTGCTGCGGGGAGGAGAGTGTCACGGCCCCGGGCTGTCAACCGTGCCCGC
ACGAGTCGTACGACGAGGGAGAATGA
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Coding sequence (CDS) from alignment at CM002466.1:151618..152543-

>rna5509 ID=rna5509|Name=rna5509|organism=Nannochloropsis gaditana|type=CDS|length=618bp|location=Sequence derived from alignment at CM002466.1:151618..152543- (Nannochloropsis gaditana)
ATGCCTCCCGTTTTATCCAGGCCAGCCCCAATGCCATCTGAAACGCCCGG
GTCCTCAATGACCATCTGCCTGCGCTCTCGTTTGTCACTGCTCCTCATGA
TGTTCCCAGCTTTAGATGTAGCCGCGCTCGATGCATCTATACCCCTTTGC
TTCTTCCGATTGCCCTTCCACGCAGCCACCACGACAGCAACCCCCTCGGT
CTCTTTTCCCTTTCGCCTACTTTCTCTTACCCTCTTGACCCCTCCCTCCT
CCTCCTCCTCCTCCTTCGTGTCCACCTTCTCACCCTTTCTCTTCCCCCTC
GCCCTCTACTCCACTCCTCCCTCCACCCCTCCCACGTCCTCCCCCCCCGC
TTTGTCCGCTTCCACTGCCCTCCCTTCCGAAGCCTACCGGACCTGCCGCC
TCTGTCTCCGCCCCTACCTCCCTTCCCGCAACCACGACACTGCATGCCGA
TACCACCCCAGCGCGTACATTGGCAATGAACGGAGCAAATTTTGCGGTAC
ACGAAGCGGGGGAAACGAGCGCGGCTTGGCCCGGTTTTGGGATTGCTGCG
GGGAGGAGAGTGTCACGGCCCCGGGCTGTCAACCGTGCCCGCACGAGTCG
TACGACGAGGGAGAATGA
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Synonyms
Publications