rna5505, rna5505 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5505
Unique Name	rna5505
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1771
Alignment location	CM002466.1:139471..142573 -

Link to JBrowse

Properties


Property Name	Value
Product	riboflavin kinase
Orig transcript id	gnl\|cribi\|Naga_100527g2.3199.mrna
Orig protein id	gnl\|cribi\|Naga_100527g2.3199
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:139471..142573 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100527g2	gene5318	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25182.1	cds5491	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5505	rna5505-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:139471..142573-
coding sequence from alignment at CM002466.1:139471..142573-

mRNA sequence

>rna5505 ID=rna5505|Name=rna5505|organism=Nannochloropsis gaditana|type=mRNA|length=1771bp
AAGAGGGTTTGTATCCTTACTAGCCTTTCTATCTATGTGCTTAGTTGTCA
TACATTGACGTCGAGTGTGCTTATTGCTCAAGACGTTTTCCCACCCCAAA
ATCACGCAGTCACAAGTACAGCTCACTAACAAGCATCATCAGCAACACCA
CATCCTCCATCCTTCGGTTCCTCACCCATGCCTCCGCCCAGGCGGCTAGC
GCCTTTAGAGGTTACCAAGGATGGAAAAGATATTTTATCTTTACTCCGCA
TTGGTTCGAAGAGCAAAGGAGGGCATTTGGGTCTTCCTACCCCTAAAGCC
CCCGGGCGAAGCCCTTCGGTCAAGACATGGGGGAGTGATACAACAGCCTC
AGGCTCATCGGATGGGCGAGCTACCACGCCTCGTCCTATGCCAGTACCAG
AGCATGAAGAAATGGTGCAAGTGAAGGTGCAGAAGGCGACAAGTGTGTTG
GAATTCACGGGGATGCTCATGGCGGCCCCTTACATGATTAAAGGCGACGA
CGTAGTGGCCTTTTACAAAGCCAACTTGCAGGAAGGCTTGACTTCCCAGG
AAGCAGACAGACGACGAGGATTGTGTGGGAAGAACACGCTCAAAGGACGG
CGATCGTTGCACCCGATCTTCCTCTTCATCCACCACCTCTTCAACTTCAT
GACTCTGATCCTCTTCATTGCCTTTGCCCTCGCCCTGGCCGTTTCCGAGT
ACCTGATGGCCTCCGTGCTGGGAGTTGTCATTTTGGTCAACGCGGTGATC
GGGTTTACTCAAGCGTACAGCTCGGAAAAAACCATCAAAGCCCTACGCCG
GCTTTCTTCGCCCAATGCACGAGTCTTGCGGGACGGACATCTGCAACACC
TGAATGCCGACCTTCTGGTCCCAGGGGACGTCATCTACCTCGACACGGGA
GATCAAATCCCCGCAGACTGTCGGCTTGTCACCTGCGTGGCGTTCGCCTC
GGACGAAGGCCTGTTGACTGGGGAGTCGCACGTGGTAAACAAAAACGAGC
ACATCCTCTCCCACTGCCATCGTGGTCTGGAACCCACATTGATGGAACGG
AAGAATATGGCTTTTTTCGGTTGTGTGGTGGCGCGGGGACGCGCAACAGG
GGTGGTGGTGGCCACGGGCATGCACACCGAGCTTGGGAAAGTCGCGCATT
CCATCGGCGAACGGCCGGCTGGGAGGACCCAGCTGCAGAAACAATTGGAA
AAACTCGCTTTGGGCCTCTTCCTTTTCGCTTTGGTCTTGGGCGTCGTCGT
GTGGGCCGCAAACGGGTTCGAAGCTGACTACGAGACGATCCTTTACGCCA
CCGCGTTGGCGGTGGCCATGATTCCGGAGTCGTTGGTGAGTGTCGTCACC
TTGACCATGGCGATCGGCGTGAAACGGCTGGCGGCGGCGAACACATTCGT
CCGACGCTTGACGGCGTTGGAGGCCCTAGGCACGGTCACCGACATCTGTT
CGGACAAGACCGGCACCTTAACCCTCAGCAAAATGGTGGCCGCCGACATA
TGGCTTCCCCGGGACGCCAAAGTTTTTGTGACCGGGCACGGACTCGAACC
CGTGGGGGCCATGTTTGTGAGCGGGCGGGAAGGAAACATGATGGCGCTGG
AGAAGCTCTCCTCCGTCTCCTTCATGCCGGCCCTGTCTGCGCTCATCAAG
GTCTCCTCCCTCTGCAACAGCAGCACCTTGGTGGAGTGTGACGGCGAGTG
GTATGGGGTTGGGGATGCCACCGAGGTGGCCCTTACTGTCCTCGCCAAGA
AAGCCCGCCTCGGTACGTCCT

protein sequence of rna5505

>rna5505-protein ID=rna5505-protein|Name=rna5505|organism=Nannochloropsis gaditana|type=polypeptide|length=372bp
MDLSAGMLVVARERFPRASFWQGDVLDLPVIYEREGGKEEGLFTAVFFNA
CFGNVFDQARALREVGKLVKKGGRVVISHPLGADFVEELRRRSPSVVLAD
LPRDEKAWRVGKEGRERGRDGGRAGRRERRNRDDMWSRGRSSSFLSLLPT
IPSFPFLPCSFFQDILVTTPFQLTSLQSTSSLYLALLCRRPDQPLPQALL
LQGPVSQGYKRGSKKLGFPTANLPSSLFVVKSLIEDIPVGVYCGWARVVG
RECKAVVNIGYSPTFQGEENREKIVEAHLIDGAFPGDFYGELMTLILTGF
LRPEQKFPSFPALVAAIQQDVEDARVAMDLPVYAGAKRLVEEEGEGTGEE
ERGNGASKGKGRWVPFEEWGPR

mRNA from alignment at CM002466.1:139471..142573-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5505 ID=rna5505|Name=rna5505|organism=Nannochloropsis gaditana|type=mRNA|length=3103bp|location=Sequence derived from alignment at CM002466.1:139471..142573- (Nannochloropsis gaditana)
CAATGAATCTTTATCAGAATGCTTTAAACATGCGAAATATGCCCCCCAAA
AAACATAGAGGAGGTTTTTTGTGCGATTTCAAATTGAAGTCGGCGTCTCC
TTTCTTTGGTTGCTGTTGCCACCGAACAAACTCACATTGACCTGATTTGT
TTCAATACGTACGTCAAACACGCAGAATAAAGATAAATGTACTGATAACG
AGGAGACTATGTCACATTTTAGGGATATGCGTCGTCTACCGCGTCTCTGT
GCAGACAAACAGGGCTCCTTGAAGACCGTCATTCCCCTTCTGTTTCTGTC
TAGTGCATCAAGTTTCGCGTCACGATCTGCCTCTTGCTGCTTCAGGACCT
ACGCGGCTGTATGTGCTGTCCTTCTGGCCTCATTTACCTGCCAATCAGCT
CTTGCATTTGCATGGGGCCCCCCAATGTCGTCGTCGCACTCTCTTTTGGG
AAGTCAAATTAGCAGGTGAGACTCCTAACCTCCTAGCTCAGCTTTCAGCG
CTTGCCTCACATAAATCGGTGCAAAGTCAGGGTATAACACTTTAGGTCAT
CTTGACCATATATTCAAACGATCCATGCTGACCATAAAAAAGCAGCTGAC
TTTATTGTCAAAAATTACATTGCACCACCGTTTCATACCACTAGCAGCCT
CGTACATGACTACCATTCGCGGAGGATGCTGGTGTGGCAATCGTCGGAAT
CTTTGGATTTCCACAAGGAGAAAGTGTACGGCATGCATGACTCATTTGAA
GGGCGTGCTGCTTCGTCGACGGTATGGGAAAAGGACTCGGCGGAGGAGGA
AAAGCGACGGGCATCCCACAATGAGAAGCAAGCAAGTGTATTTGACGAAG
CAGCGCAGTAAGTGATCGGAGAGAAGAATGATTTGAAAATGCTTGGGTAA
ACTTGCGGAAGACGTGTTGAAAAAAGTGCGTAAGGGACAGAAAGGAGAGG
AAAGGAGAGGAAAGTGGAGCAGCCATGTGGGAAGGAAGAAGTACGAAGCA
TCTATGAATAGGACTGCACTGTAGTGTAAGAAACTGACAAGTGCGCCTAT
CCTGGTACTTTGACCGGCTTATTTCCCTCCTCGCAGATTTTTTTTCCAGC
GAGGAAGCGACCCCTGAGGACGTTATCCCTCGTCTCCGACGCATCGCCGA
GGCTGCTGCCCTCCGTCCCACCGATCGTGTCCTCGACGTGGGCACAGGGA
CCGGGGCCCTCCTCCCCTTCCTCCTTCCCTACCTGGACGAAAACGCCGGA
GAGAAGCGCATTGTCGGGATGGATCTCTCCGCGGGCATGTTGGTGGTGGC
GAGGGAGAGGTTTCCGCGTGCGTCCTTTTGGCAGGGGGACGTTCTTGATC
TCCCCGTGATATACGAGCGGGAGGGGGGGAAGGAGGAAGGGCTGTTCACC
GCCGTGTTTTTCAACGCCTGCTTTGGAAACGTCTTTGACCAGGCACGAGC
CCTCCGGGAAGTGGGCAAGCTGGTCAAAAAAGGCGGCCGGGTGGTCATTT
CTCATCCTTTAGGTGCCGATTTCGTGGAAGAATTGCGGCGGCGTTCCCCC
TCCGTCGTGCTCGCGGACCTTCCCAGGGACGAAAAGGCGTGGAGGGTAGG
GAAGGAGGGGAGAGAGAGAGGGAGGGACGGAGGGAGGGCGGGAAGGAGGG
AAAGAAGGAACAGGGATGACATGTGGTCACGGGGTCGTTCCTCGTCTTTC
CTTTCCCTGCTCCCAACCATTCCCTCCTTTCCCTTCTTGCCCTGCTCCTT
CTTCCAGGACATTCTGGTCACAACACCCTTTCAGCTTACCTCGCTGCAGT
CAACATCTTCCCTCTACCTCGCCCTCCTTTGCCGTCGGCCTGATCAACCC
CTCCCTCAGGCGCTCCTCCTCCAAGGACCAGTCAGTCAAGGATACAAACG
CGGAAGCAAAAAACTGGGCTTCCCCACCGCCAACCTCCCATCCTCGCTTT
TTGTCGTCAAATCGCTCATAGAAGATATTCCCGTGGGTGTCTATTGCGGT
TGGGCTCGTGTAGTTGGGCGTGAGTGTAAGGCAGTGGTGAATATTGGGTA
CTCCCCTACATTCCAGGGGGAGGAGAACAGGGAGAAGATTGTAGAGGCGC
ATTTGATTGACGGCGCTTTTCCCGGAGATTTCTACGGGGAGTTAATGACA
TTGATTCTCACAGGGTTCCTACGGCCCGAGCAGAAATTTCCGAGCTTCCC
TGCCTTAGTAGCAGCTATCCAGCAGGACGTGGAAGACGCCAGGGTGGCGA
TGGACTTGCCTGTGTATGCAGGGGCGAAGCGATTGGTAGAGGAAGAAGGG
GAGGGCACAGGGGAAGAGGAGAGAGGAAATGGAGCGTCGAAGGGGAAAGG
GAGGTGGGTGCCGTTTGAGGAGTGGGGTCCCAGATAATGCTGTAAGTCGA
AAAGTTTGTCATCTTTGTGCGTCGTCGTCATCATTGTCACCGACTCAAGC
TTTAATTTGCGTAGAGACTAAGATGGACACAGTTGTTTCTTTATCCACCT
ACTGTGCTGAAACGCTCGAGAAGGGTTGTTCAAGAAAAAGCGGAAAGTTG
GTGAAATAATGCAGGGTAGGTATGAAGGTTAAGAGTCGGCTGTCTCCACG
TTAATCGACACAGCACAATGTACACGCGGGAAATGATTGAGAAGAGCATC
CTGCTCAAAGCCTACCAAACCAGAATGGACGGGGAAGTAAAAGCATAGGC
AATGGTAGTTCTGGCAAAGCAACTCGGGGACTCCACAAGCATACCCGGAG
GAGATGATTACGACGACTATTTCAATTTGACCTATCCCACTAGAATTGCG
ACCTTGCCCAAAGTTTCCAAGGCCCCTTGATCTTACTTTTGGCTATTGAC
ATGAAGCTTTGCATGGTTTGCAATGGGAGAATCCCAAGTGCCGCTGAGAG
TTGTTTCTGCTGTTTGCATGCAAGTATCTTTCTGTACTTCCGATGTGACG
TACGTGTGTATCTCTTCCTCCAATGGCAATACATGAGAAAAACACGCCGT
GCCGCAGTCAAGTATGTACCTCGCATAAGACGCATGTACTCAAGGACGTA
GCCGTATGCGAGTTGTTCGAGACGGCAATGTTGACCACAGCTTTTTCTTT
TGG

Coding sequence (CDS) from alignment at CM002466.1:139471..142573-

>rna5505 ID=rna5505|Name=rna5505|organism=Nannochloropsis gaditana|type=CDS|length=1119bp|location=Sequence derived from alignment at CM002466.1:139471..142573- (Nannochloropsis gaditana)
ATGGATCTCTCCGCGGGCATGTTGGTGGTGGCGAGGGAGAGGTTTCCGCG
TGCGTCCTTTTGGCAGGGGGACGTTCTTGATCTCCCCGTGATATACGAGC
GGGAGGGGGGGAAGGAGGAAGGGCTGTTCACCGCCGTGTTTTTCAACGCC
TGCTTTGGAAACGTCTTTGACCAGGCACGAGCCCTCCGGGAAGTGGGCAA
GCTGGTCAAAAAAGGCGGCCGGGTGGTCATTTCTCATCCTTTAGGTGCCG
ATTTCGTGGAAGAATTGCGGCGGCGTTCCCCCTCCGTCGTGCTCGCGGAC
CTTCCCAGGGACGAAAAGGCGTGGAGGGTAGGGAAGGAGGGGAGAGAGAG
AGGGAGGGACGGAGGGAGGGCGGGAAGGAGGGAAAGAAGGAACAGGGATG
ACATGTGGTCACGGGGTCGTTCCTCGTCTTTCCTTTCCCTGCTCCCAACC
ATTCCCTCCTTTCCCTTCTTGCCCTGCTCCTTCTTCCAGGACATTCTGGT
CACAACACCCTTTCAGCTTACCTCGCTGCAGTCAACATCTTCCCTCTACC
TCGCCCTCCTTTGCCGTCGGCCTGATCAACCCCTCCCTCAGGCGCTCCTC
CTCCAAGGACCAGTCAGTCAAGGATACAAACGCGGAAGCAAAAAACTGGG
CTTCCCCACCGCCAACCTCCCATCCTCGCTTTTTGTCGTCAAATCGCTCA
TAGAAGATATTCCCGTGGGTGTCTATTGCGGTTGGGCTCGTGTAGTTGGG
CGTGAGTGTAAGGCAGTGGTGAATATTGGGTACTCCCCTACATTCCAGGG
GGAGGAGAACAGGGAGAAGATTGTAGAGGCGCATTTGATTGACGGCGCTT
TTCCCGGAGATTTCTACGGGGAGTTAATGACATTGATTCTCACAGGGTTC
CTACGGCCCGAGCAGAAATTTCCGAGCTTCCCTGCCTTAGTAGCAGCTAT
CCAGCAGGACGTGGAAGACGCCAGGGTGGCGATGGACTTGCCTGTGTATG
CAGGGGCGAAGCGATTGGTAGAGGAAGAAGGGGAGGGCACAGGGGAAGAG
GAGAGAGGAAATGGAGCGTCGAAGGGGAAAGGGAGGTGGGTGCCGTTTGA
GGAGTGGGGTCCCAGATAA

Synonyms

Publications