rna550, rna550 (mRNA) Nannochloropsis gaditana

Overview
Namerna550
Unique Namerna550
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length465
Alignment locationCM002455.1:1372286..1373879 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100541g6.965.mrna
Orig protein idgnl|cribi|Naga_100541g6.965
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1372286..1373879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100541g6gene531Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna550rna550-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30128.1cds550Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna550 ID=rna550|Name=rna550|organism=Nannochloropsis gaditana|type=mRNA|length=465bp
ATGGGAAATGGCCACAACGACAGGACGGTTCCTGCGGGGATGATCTGCCC
ATCGCATTCCCTTTTTCCCGTACTACCTGCACGCACATTGGTGGGAGAAT
GGAAAGGGCTACGGAGGAATTTTCCTCCGTGCTTCCATTGTTTCGCGCCA
GGGATGGAGGTGGCGAAGGCCCGTGGGCCTTTCCATTTTCCGGGTATCTT
TCCGAAGGGCCGGGGGCCGAGCCCTTCTCTCGCCACCGGTTCCCGCCCGG
TGGTGTTGTCAAGAAGACGAGGCTTACCCGCAACATGGGGCTTCTGTTGG
CTGCGCAGAAAGGGGGGGAATGGCGCGACGCAGGCAGGGAGCATTGAGGG
TTGCGCTGGGCAAGGGGAAGGGGAGGAAGTGGGGGTAGGCGGGAAGATAA
AGACGGGGATAAGGAGAGGGTGGGAAGAAAGAGGAGAGACGAAGATTTTT
ATCGGGTTGGGTTAG
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protein sequence of rna550

>rna550-protein ID=rna550-protein|Name=rna550|organism=Nannochloropsis gaditana|type=polypeptide|length=376bp
MSHLDQAYAGLAERRRRKLSVIRHPHSSIGRRVSVPRAFTLRFFVLDPTH
FSPPALPSSFPNTPPSTQTKTLGGLQLSNSTTAPAAVVAEDAGMRFARLR
GRGCREGGGKEGAEAGAGGSRGGGGGGGGGGGRDSRGGRGGGRLVRLFRD
GRHALPAFPPAHLVLVSPPPPSSSPSPCPRTCRPSHSSPSPPGSRQVVEL
PLPGLGGAQGPGGAQDGCRGPWGPGRGRRQHEPHLNRGRAHLSHRRHDPA
PPSLPLPPRQLHPLRPSFPPPRPRQAGGATCSHLKYPSETVPTCEATTRP
LRATAPGGQYHHPSPFALTRSGSNPAGILNRRLLFGFKSRPNDGVDMYVC
VQSKKNVAATSRTVSSGPEHAMTASP
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mRNA from alignment at CM002455.1:1372286..1373879+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna550 ID=rna550|Name=rna550|organism=Nannochloropsis gaditana|type=mRNA|length=1594bp|location=Sequence derived from alignment at CM002455.1:1372286..1373879+ (Nannochloropsis gaditana)
GACGGGGTAGCACGTGCTGTAGGATGGCACGGTGTCAGGGGAGGTATCTC
TATGCGTGTTCAGGCTCTGGAcgtaaggagggaaggaaaattcAGGAGGA
AATCGGGTGCAtccggggaaggaaatggaggcgtCTGacgcggggagagg
gaattTGTTGCGCTTGGACTGATGCTTGTTCGACCCTGAATTTTGTGCTT
GGCACGGGCGGTCAGCGGTGTATAAACGGGTACCTGAATGTCGCATTTGG
ATCAGGCCTATGCCGGGCTCGCTgaaaggcgaagaaggaaacTGTCCGTC
ATTCGTCATCCCCATTCCAGCATCGGAAGACGCGTCTCTGTGCCAAGAGC
GTTCACGTTGCGTTTTTTCGTCCTGGACCCCACTCATTTtagccctcccg
ccctcccttcctctttcccaaaCACCCCCCCATCCACCCAGACAAAGACA
CTTGGTGGCCTTCAACTTTCAAACTCCACAACAGCCCCAGCCGCCGTGGT
CGCAGAGGATGCAGGGATGCGATTCGCACGCctcagggggaggggatgta
gggagggcggaggaaaggaaggggcagaagcgggcgcgggcgggtcgaga
ggaggaggaggaggaggaggaggaggaggaggaagagacagtaggggagg
aagaggaggaggaagacttgTACGCCTTTTTAGAGACGGAAGACACGcac
tccccgccttcccccctgcccacctcgtcctcgtctcccctccccctccc
tcctcatcaccctcgccctgcccccgcacctgccgcccctcccattcctc
accttccccgccgGGGTCCCGACAAGTCGTTgaacttcctcttccaggcc
TTGGTGGGGCGCAAGGTCCTGGTGGAGCTCAAGACGGATGCCGAGGCCCG
TGGGGTcctggaagagggtgggggagggggcgagggaggcaggacgggag
ggggaagcagaGGATAGCATGTGGTCGCCTTGATACGCgcaccgcccctt
cctttcacTTCGCattcatccttttcccctccctcgttcctttcctccct
ccctccctccctcccccagccgaCGACAACATGAACCTCACCTTAACCGA
GGCCGAGCACATCTCTCCCACCGGCGCCACGACCCcgcacctccttccct
acctctaCCTCCACGGCAGCTGCATCCGTTACGTCCATCTTTCCCCCCAC
CTAGACCTAGacaagctggtggagcgACATGCAGTCACCTTAAGTATCCA
AGCGAAACGGTTCCAACGTGCGAGGCTACGACCCGCCCCCTCAGGGCGAC
AGCCCCCGGGGGCCAGTACCACCATCCAAGTCCATTTGCCCTTACCCGCA
GCGGAAGCAACCCGGCCGGAATTTTGAATCGACGGTTACTTTTTGGATTT
AAATCGCGGCCAAACGACGGGGTAGACATGTATGTCTGTGtgcaaagcaa
aaaaaatgTAGCGGCTACGTCCCGGACCGTATCCAGCGGCCCCGAGCACG
CAATGACTGCCTCTCCTTGACTCGAGTCGCATGCGGTGCGTGGCGGCGCA
TGCAGCCCTCGTGCATTCCAAGGACAACTTTGGGTGGCCGACGA
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Coding sequence (CDS) from alignment at CM002455.1:1372286..1373879+

>rna550 ID=rna550|Name=rna550|organism=Nannochloropsis gaditana|type=CDS|length=2262bp|location=Sequence derived from alignment at CM002455.1:1372286..1373879+ (Nannochloropsis gaditana)
ATGTCGCATTTGGATCAGGCCTATGCCGGGCTCGCTgaaaggcgaagaag
gaaacTGTCCGTCATTCGTCATCCCCATTCCAGCATCGGAAGACGCGTCT
CTGTGCCAAGAGCGTTCACGTTGCGTTTTTTCGTCCTGGACCCCACTCAT
TTtagccctcccgccctcccttcctctttcccaaaCACCCCCCCATCCAC
CCAGACAAAGACACTTGGTGGCCTTCAACTTTCAAACTCCACAACAGCCC
CAGCCGCCGTGGTCGCAGAGGATGCAGGGATGCGATTCGCACGCctcagg
gggaggggatgtagggagggcggaggaaaggaaggggcagaagcgggcgc
gggcgggtcgagaggaggaggaggaggaggaggaggaggaggaggaagag
acagtaggggaggaagaggaggaggaagacttgTACGCCTTTTTAGAGAC
GGAAGACACGcactccccgccttcccccctgcccacctcgtcctcgtctc
ccctccccctccctcctcatcaccctcgccctgcccccgcacctgccgcc
cctcccattcctcaccttccccgccgGGGTCCCGACAAGTCGTTgaactt
cctcttccaggccTTGGTGGGGCGCAAGGTCCTGGTGGAGCTCAAGACGG
ATGCCGAGGCCCGTGGGGTcctggaagaggccgaCGACAACATGAACCTC
ACCTTAACCGAGGCCGAGCACATCTCTCCCACCGGCGCCACGACCCcgca
cctccttccctacctctaCCTCCACGGCAGCTGCATCCGTTACGTCCATC
TTTCCCCCCACCTAGACCTAGacaagctggtggagcgACATGCAGTCACC
TTAAGTATCCAAGCGAAACGGTTCCAACGTGCGAGGCTACGACCCGCCCC
CTCAGGGCGACAGCCCCCGGGGGCCAGTACCACCATCCAAGTCCATTTGC
CCTTACCCGCAGCGGAAGCAACCCGGCCGGAATTTTGAATCGACGGTTAC
TTTTTGGATTTAAATCGCGGCCAAACGACGGGGTAGACATGTATGTCTGT
GtgcaaagcaaaaaaaatgTAGCGGCTACGTCCCGGACCGTATCCAGCGG
CCCCGAGCACGCAATGACTGCCTCTCCTTGAATGTCGCATTTGGATCAGG
CCTATGCCGGGCTCGCTgaaaggcgaagaaggaaacTGTCCGTCATTCGT
CATCCCCATTCCAGCATCGGAAGACGCGTCTCTGTGCCAAGAGCGTTCAC
GTTGCGTTTTTTCGTCCTGGACCCCACTCATTTtagccctcccgccctcc
cttcctctttcccaaaCACCCCCCCATCCACCCAGACAAAGACACTTGGT
GGCCTTCAACTTTCAAACTCCACAACAGCCCCAGCCGCCGTGGTCGCAGA
GGATGCAGGGATGCGATTCGCACGCctcagggggaggggatgtagggagg
gcggaggaaaggaaggggcagaagcgggcgcgggcgggtcgagaggagga
ggaggaggaggaggaggaggaggaggaagagacagtaggggaggaagagg
aggaggaagacttgTACGCCTTTTTAGAGACGGAAGACACGcactccccg
ccttcccccctgcccacctcgtcctcgtctcccctccccctccctcctca
tcaccctcgccctgcccccgcacctgccgcccctcccattcctcaccttc
cccgccgGGGTCCCGACAAGTCGTTgaacttcctcttccaggccTTGGTG
GGGCGCAAGGTCCTGGTGGAGCTCAAGACGGATGCCGAGGCCCGTGGGGT
cctggaagaggccgaCGACAACATGAACCTCACCTTAACCGAGGCCGAGC
ACATCTCTCCCACCGGCGCCACGACCCcgcacctccttccctacctctaC
CTCCACGGCAGCTGCATCCGTTACGTCCATCTTTCCCCCCACCTAGACCT
AGacaagctggtggagcgACATGCAGTCACCTTAAGTATCCAAGCGAAAC
GGTTCCAACGTGCGAGGCTACGACCCGCCCCCTCAGGGCGACAGCCCCCG
GGGGCCAGTACCACCATCCAAGTCCATTTGCCCTTACCCGCAGCGGAAGC
AACCCGGCCGGAATTTTGAATCGACGGTTACTTTTTGGATTTAAATCGCG
GCCAAACGACGGGGTAGACATGTATGTCTGTGtgcaaagcaaaaaaaatg
TAGCGGCTACGTCCCGGACCGTATCCAGCGGCCCCGAGCACGCAATGACT
GCCTCTCCTTGA
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Synonyms
Publications