EWM30128.1, cds550 (CDS) Nannochloropsis gaditana

Overview
NameEWM30128.1
Unique Namecds550
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1372523..1373202 +
Alignment locationCM002455.1:1373355..1373805 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30128.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100541g6.965.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1372523..1373202 +
CM002455.1supercontigCM002455.1:1373355..1373805 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM30128.1 vs. NCBI_GenBank
Match: gi|585112778|gb|EWM30128.1| (hypothetical protein Naga_100541g6 [Nannochloropsis gaditana])

HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 0 
Query:    1 MSHLDQAYAGLAERRRRKLSVIRHPHSSIGRRVSVPRAFTLRFFVLDPTHFSPPALPSSFPNTPPSTQTKTLGGLQLSNSTTAPAAVVAEDAGMRFARLRGRGCREGGGKEGAEAGAGGSRGGGGGGGGGGGRDSRGGRGGGRLVRLFRDGRHALPAFPPAHLVLVSPPPPSSSPSPCPRTCRPSHSSPSPPGSRQVVELPLPGLGGAQGPGGAQDGCRGPWGPGRGRRQHEPHLNRGRAHLSHRRHDPAPPSLPLPPRQLHPLRPSFPPPRPRQAGGATCSHLKYPSETVPTCEATTRPLRATAPGGQYHHPSPFALTRSGSNPAGILNRRLLFGFKSRPNDGVDMYVCVQSKKNVAATSRTVSSGPEHAMTASP 376
            MSHLDQAYAGLAERRRRKLSVIRHPHSSIGRRVSVPRAFTLRFFVLDPTHFSPPALPSSFPNTPPSTQTKTLGGLQLSNSTTAPAAVVAEDAGMRFARLRGRGCREGGGKEGAEAGAGGSRGGGGGGGGGGGRDSRGGRGGGRLVRLFRDGRHALPAFPPAHLVLVSPPPPSSSPSPCPRTCRPSHSSPSPPGSRQVVELPLPGLGGAQGPGGAQDGCRGPWGPGRGRRQHEPHLNRGRAHLSHRRHDPAPPSLPLPPRQLHPLRPSFPPPRPRQAGGATCSHLKYPSETVPTCEATTRPLRATAPGGQYHHPSPFALTRSGSNPAGILNRRLLFGFKSRPNDGVDMYVCVQSKKNVAATSRTVSSGPEHAMTASP
Sbjct:    1 MSHLDQAYAGLAERRRRKLSVIRHPHSSIGRRVSVPRAFTLRFFVLDPTHFSPPALPSSFPNTPPSTQTKTLGGLQLSNSTTAPAAVVAEDAGMRFARLRGRGCREGGGKEGAEAGAGGSRGGGGGGGGGGGRDSRGGRGGGRLVRLFRDGRHALPAFPPAHLVLVSPPPPSSSPSPCPRTCRPSHSSPSPPGSRQVVELPLPGLGGAQGPGGAQDGCRGPWGPGRGRRQHEPHLNRGRAHLSHRRHDPAPPSLPLPPRQLHPLRPSFPPPRPRQAGGATCSHLKYPSETVPTCEATTRPLRATAPGGQYHHPSPFALTRSGSNPAGILNRRLLFGFKSRPNDGVDMYVCVQSKKNVAATSRTVSSGPEHAMTASP 376
The following BLAST results are available for this feature:
BLAST of EWM30128.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585112778|gb|EWM30128.1|0.000e+0100.00hypothetical protein Naga_100541g6 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna550rna550Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications