rna5499, rna5499 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5499
Unique Name	rna5499
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	366
Alignment location	CM002466.1:108076..111774 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100146g5.3715.mrna
Orig protein id	gnl\|cribi\|Naga_100146g5.3715
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:108076..111774 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100146g5	gene5311	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5499	rna5499-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25187.1	cds5485	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:108076..111774+
coding sequence from alignment at CM002466.1:108076..111774+

mRNA sequence

>rna5499 ID=rna5499|Name=rna5499|organism=Nannochloropsis gaditana|type=mRNA|length=366bp
ATGAATTTATGTGCATATGCGTGCGATGGCATGTTAGGGGAAAATGGCAA
GATCAAGGAAAGGAGGATCGTAAATTACTCTCTCGCTGATAGCACGGGTA
AAGCGCCGACTTCAAACGCCCGCCTACCCGAAATCATAGCGAAGATTCAT
AATAGCTTCTTGAAGGAATCGAGTCCGGGAATACCTCCTCTTCAGAATAT
CCTGAATGATTGGAGGAGAGAAAGTCACAGGGATAGGGATACGAAAAGTC
CCGAGCTGGATGGATGTACTTACACTTTGGAAGAAACAGGCGAAATCACC
ACGGTCAATCGATGCACCAATGTGCATTGTATTGATTTAGGTTCTATGGA
ATGTATCTTGGAGTGA

protein sequence of rna5499

>rna5499-protein ID=rna5499-protein|Name=rna5499|organism=Nannochloropsis gaditana|type=polypeptide|length=528bp
MGMKKRRRTKQGTRRGSALRPPKRKVLHPRRIKSWIVKKLSPMRRCHVRI
YRKAARPKAPSALPGAGLVWNAKPVRSNAIRRNRDASDAFATAFYASLKL
EDRDGRQNGGKEGSGEEGEEAKALLDYTSVAACLPVSKSISSSWAAMDVS
FSYFSPCRLYLAADDAVQDGKDVLATQSKALLLSSSQLPPPPTSNSASYE
PALPPSLLPSFPSSFPPNPASVGPLLQLSSAATTPPLSSISSAPSVSPPY
YPNPLGKREEHPVNEVESQMLAARSLKHLKDGHASFPSSSTPAYASSSFP
SRGPPASEGRLYGPMHGSMNPNLSSGYGGNFQSHLLPPGYQSYPSYGNIR
EMHSLAPAFPPYHPGPGAFHMQHVYPNNAGLTDVPSPLPAPSSYPPFPSP
SSVAALDGPGSMVRDTSMPGLGLRDGRQGNWVDPHHPPHQHASMQFVSQQ
QQREQQLRHGQGQPYHPQQATHFHQDARQPWWQQHLRPPHPVPQGTLQCQ
QQQLIFERQHELQQQRQRQQQQPQLGLM

mRNA from alignment at CM002466.1:108076..111774+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5499 ID=rna5499|Name=rna5499|organism=Nannochloropsis gaditana|type=mRNA|length=3699bp|location=Sequence derived from alignment at CM002466.1:108076..111774+ (Nannochloropsis gaditana)
aaagaaaggacgaGTGAGATTTGCCCGTGGGTAGCCTATCTGCCACGCCC
CTATTCTCTGTCAAGTAAGGAAAGCATCTGTCTTGAGGCATTCGGTGGTT
GGGGAGTTACTCCCGCGCCCCTGGATCTCTAGGTGTCAAGTCCCCCTTCC
GGATAATCACCGTGCAAAACCATAAAGACCACATGGCACGCGTAATCATG
CTCAGGGACCTTGTAGACGGACGTATGACACTCGCGGTGTGCATCGGAGG
ACCTGATTTTATCGTGGTGTGTGACATGTGGTGACTTATCCAGGACCGCG
GTACTCGGCCAACCGCTCGAGGCATGTTTCAGCGTGTTAACGGAGAGATG
TACTTAACATTGGGGACAGTGCCGGTGCGGGATGGACGACTCCATGCTCA
ACATTCAAGTGCTTGATTTCTCTGCTTTGGTTCCATTGGACGTGGGGCAG
TCCGGCTTTGCATGGATATTCGGTTTCGTAAGCCGAGTCATGCCCGAGAA
AGGGGGTTCTGCAAGTCTTTACGAAATGTTCTGTCGCGCTGATTCCCACC
CACCAAAAACTCCACCCACACAGGTGAAATCGTTGCGCCACACGTACACA
CTAACTCAAATGTCGGAGCGgagcgaagaaagggagggcaacCCAGACAA
agacgtgggagaggatAGTTCTCAGAGAAAAGGACAGAGAGCGATGAAgg
taaaggaggaaaggaaggtgagagaaaaaaagacaaaGCGAAAAGATTCA
CAGGTTGGAAAGAGCAAGGTTAAGGAGTTGAAAGAGAAGTCGGATGGGAA
TGAAGAAGCGCCGAAGGACCAAACAGGGCACGAGACGAGGGAGTGCTCTG
AGGCCGCCAAAACGGAAAGTCTTGCATCCGCGGCGGATCAAGAGCTGGAT
CGTGAAAAAGCTGAGCCCGATGAGGCGATGCCACGTCCGAATATACCGAA
AGGCGGCACGTCCGAAGGCACCCAGCGCCTTGCCAGGGGCCGGGCTTGTC
TGGAATGCAAAACCAGTAAGGTAAGTGAAACTGCATGGTTTATGGGGCGA
AAGGTTGTATGTCTCGATCACAAGTTATTGGGGACGGTGATTGGAAAGTT
ATTATTTCTTAAAATAAGGGCGCACAATAGATTGTGGGACGGAATGACCG
GGGAATAGTTGTAGCACCAGACATAATTGAAGAAATTGGAGCCCATACTA
GCAGAGGAAATTGCTTGATAGATTTGATAATTGACTCGTAGAGTTCAGAA
GAGACAAAGAGAGGGGATCATTGTCGAGCAGGTCTTGGTCGTTTTCATCT
TACACAtctcccgtcttcctctctttttttctttctcccctcccccatca
tCCTTTCAACCCATTTTGCCCAGGTCAAATGCGATAAGGCGCAACCGCGA
TGCCAGCGATGCGTTCGCCACGGCTTTCTATGCCTCCCTCAAACtcgagg
acagggacggCCGGCAAAATGGAGGTAAAGAGGggtcgggagaggaggga
gaggaggcgaaagccTTACTAGATTACACATCGGTGGCCGCTTGTCTTCC
TGTGTCAAAGTCTATCTCCTCGTCTTGGGCTGCTATGGATGTCTCATTCT
CTTATTTTTCACCGTGCAGGCTGTACTTGGCCGCCGACGACGCGGTCCAG
GACGGCAAAGACGTGCTGGCCACGCAGTCGAAAGCATTGCTCCTCTCGTC
TTCCCAACTACCGCCTCCGCCGACGTCAAACTCTGCCTCTTACGAgcctg
ccctcccgccctccctccttccctccttcccttcctctttcccgcccaat
CCGGCGTCGGTGGGCCCTCTCCTTCAGCTTTCTTCCGcagccaccacccc
tcctctctcctccatctcctcggctccctccgtctcccctccctactACC
CCAACCCTTTGGGGAAACGCGAAGAGCACCCCGTCAATGAGGTGCGCGGC
GATGCCTTCCGAGGTCTTGCTTGTCCGGTTGCTGCTCCCTTGTCTCATTC
GGCCTTTTTCGCTCCTGGAAATGGATTTTTGTGGTTTTTTTCGGGGTTGG
CGCTTTCTCGGGGCGTGGTAACTTCTGCGTTCCCCCCTGTTTTCGTGCTC
GGTCCTTGAAGGTCTTATGagcgcctttcctctcttgaTCTACATGTCTC
AAGTCTATTTTTTGGTGTCTTTTTACAACCCTTgtgttttttccccccca
cccgttGTCGTATGTGCCTCTTTGTTTTGCTTCTGCGCCTACAGCCTGAC
GTCCTGAGATTTTTATAAACCCCTTTCTTTGTTGACTTTCCTCCATTCTT
GTTGCGGATGCTTGCATTTTTTCTCCCCTGTGTGGGACGTCCATATCATC
CTGTGCGTCCTAAATGTCGTACTCAACGATCGTCCCatttcccttgtcct
cccttttgcctcgtcccacgtcctccacaaCAACAGGTGGAAAGTCAAAT
GCTGGCGGCCCGTTCCCTCAAACACTTGAAAGACGggcatgcctccttcc
cttcttcctcgactCCCGCCtacgcgtcctcctcctttccatcgcgcggt
ccccccgcctcggagGGTCGTCTCTATGGCCCCATGCACGGCAGCATGAA
CCCGAACCTCAGCAGCGGTTATGGGGGCAATTTCCAGTCACACCTGCTGC
CGCCAGGATATCAAAGTTACCCAAGCTACGGGAACATTAGGGAGATGCAT
AGCTTAGCCCCGGCCTTCCCACCCTACCACCCCGGTCCGGGCGCTTTCCA
TATGCAGCATGTTTATCCGAATAATGCCGGCCTGACCGACGTCCCGTCAC
CCTTgccggcgccctcctcctaccctccttttccttccccttcttccgtg
GCAGCTTTGGACGGGCCTGGTAGCATGGTTCGAGATACTTCCATGCCCGG
ACTAGGGCTCCGAGATGGGCGGCAAGGGAATTGGGTCGATCCTCACCACC
CGCCCCACCAGCACGCATCGATGCAATTCGTAtcgcaacagcagcagcga
gagCAGCAGCTCCGACACGGACAGGGGCAGCCGTACCACCCACAGCAAGC
AACACATTTCCATCAAGACGCGCGGCAGCCATGGTGGCAGCAGCATCTGC
GGCCTCCCCACCCGGTACCGCAGGGAACATTGCAGTGCCAACAGCAACAA
CTCATATTTGAACGGCAACAtgagctgcagcagcagcgacaacgacaaca
gcagcagccacagctTGGACTGATGTGACCTCCTATATATCTTTTGTGCT
TGGTGTGATCAAAAGACTCAGAACAGAAGTGACAGAGACGAATCCAAACG
CATCACCCTAAGTACCGTTATCACGCCAATAGCGTACGTGAAGGCCGAGA
GAGGTGCATAACCGCATAACTCTGCTTTCGTGCAGGGAAGTCAGCGAAGA
TTAGTATCCATTGTGATGTGCTCAACAAGGGCCACGGCACGAGTTGTTCT
TGAGACGCGAATGCATGAGTCCTGACGCGAAAAATGTCAATAATACACTA
CGAAGCGCCCCAAAGTTATCGATATGATTAGAGCAATATGTTACATCCCT
TTAAAAAATGTGGTCAGCCTGAATCATGCACTACgacttcttttcctttc
ttatTCCGATTTTATAAAACTCCGCAACATATCTAGATGTCTTTCCAGAT
CACTTTTCAAACGCGACCTGTGCGACGATTTTGTGTGCAATTTTTCCTC

Coding sequence (CDS) from alignment at CM002466.1:108076..111774+

>rna5499 ID=rna5499|Name=rna5499|organism=Nannochloropsis gaditana|type=CDS|length=4761bp|location=Sequence derived from alignment at CM002466.1:108076..111774+ (Nannochloropsis gaditana)
ATGGGAATGAAGAAGCGCCGAAGGACCAAACAGGGCACGAGACGAGGGAG
TGCTCTGAGGCCGCCAAAACGGAAAGTCTTGCATCCGCGGCGGATCAAGA
GCTGGATCGTGAAAAAGCTGAGCCCGATGAGGCGATGCCACGTCCGAATA
TACCGAAAGGCGGCACGTCCGAAGGCACCCAGCGCCTTGCCAGGGGCCGG
GCTTGTCTGGAATGCAAAACCAGTAAGGTCAAATGCGATAAGGCGCAACC
GCGATGCCAGCGATGCGTTCGCCACGGCTTTCTATGCCTCCCTCAAACtc
gaggacagggacggCCGGCAAAATGGAGGTAAAGAGGggtcgggagagga
gggagaggaggcgaaagccTTACTAGATTACACATCGGTGGCCGCTTGTC
TTCCTGTGTCAAAGTCTATCTCCTCGTCTTGGGCTGCTATGGATGTCTCA
TTCTCTTATTTTTCACCGTGCAGGCTGTACTTGGCCGCCGACGACGCGGT
CCAGGACGGCAAAGACGTGCTGGCCACGCAGTCGAAAGCATTGCTCCTCT
CGTCTTCCCAACTACCGCCTCCGCCGACGTCAAACTCTGCCTCTTACGAg
cctgccctcccgccctccctccttccctccttcccttcctctttcccgcc
caatCCGGCGTCGGTGGGCCCTCTCCTTCAGCTTTCTTCCGcagccacca
cccctcctctctcctccatctcctcggctccctccgtctcccctccctac
tACCCCAACCCTTTGGGGAAACGCGAAGAGCACCCCGTCAATGAGGTGGA
AAGTCAAATGCTGGCGGCCCGTTCCCTCAAACACTTGAAAGACGggcatg
cctccttcccttcttcctcgactCCCGCCtacgcgtcctcctcctttcca
tcgcgcggtccccccgcctcggagGGTCGTCTCTATGGCCCCATGCACGG
CAGCATGAACCCGAACCTCAGCAGCGGTTATGGGGGCAATTTCCAGTCAC
ACCTGCTGCCGCCAGGATATCAAAGTTACCCAAGCTACGGGAACATTAGG
GAGATGCATAGCTTAGCCCCGGCCTTCCCACCCTACCACCCCGGTCCGGG
CGCTTTCCATATGCAGCATGTTTATCCGAATAATGCCGGCCTGACCGACG
TCCCGTCACCCTTgccggcgccctcctcctaccctccttttccttcccct
tcttccgtgGCAGCTTTGGACGGGCCTGGTAGCATGGTTCGAGATACTTC
CATGCCCGGACTAGGGCTCCGAGATGGGCGGCAAGGGAATTGGGTCGATC
CTCACCACCCGCCCCACCAGCACGCATCGATGCAATTCGTAtcgcaacag
cagcagcgagagCAGCAGCTCCGACACGGACAGGGGCAGCCGTACCACCC
ACAGCAAGCAACACATTTCCATCAAGACGCGCGGCAGCCATGGTGGCAGC
AGCATCTGCGGCCTCCCCACCCGGTACCGCAGGGAACATTGCAGTGCCAA
CAGCAACAACTCATATTTGAACGGCAACAtgagctgcagcagcagcgaca
acgacaacagcagcagccacagctTGGACTGATGTGAATGGGAATGAAGA
AGCGCCGAAGGACCAAACAGGGCACGAGACGAGGGAGTGCTCTGAGGCCG
CCAAAACGGAAAGTCTTGCATCCGCGGCGGATCAAGAGCTGGATCGTGAA
AAAGCTGAGCCCGATGAGGCGATGCCACGTCCGAATATACCGAAAGGCGG
CACGTCCGAAGGCACCCAGCGCCTTGCCAGGGGCCGGGCTTGTCTGGAAT
GCAAAACCAGTAAGGTCAAATGCGATAAGGCGCAACCGCGATGCCAGCGA
TGCGTTCGCCACGGCTTTCTATGCCTCCCTCAAACtcgaggacagggacg
gCCGGCAAAATGGAGGTAAAGAGGggtcgggagaggagggagaggaggcg
aaagccTTACTAGATTACACATCGGTGGCCGCTTGTCTTCCTGTGTCAAA
GTCTATCTCCTCGTCTTGGGCTGCTATGGATGTCTCATTCTCTTATTTTT
CACCGTGCAGGCTGTACTTGGCCGCCGACGACGCGGTCCAGGACGGCAAA
GACGTGCTGGCCACGCAGTCGAAAGCATTGCTCCTCTCGTCTTCCCAACT
ACCGCCTCCGCCGACGTCAAACTCTGCCTCTTACGAgcctgccctcccgc
cctccctccttccctccttcccttcctctttcccgcccaatCCGGCGTCG
GTGGGCCCTCTCCTTCAGCTTTCTTCCGcagccaccacccctcctctctc
ctccatctcctcggctccctccgtctcccctccctactACCCCAACCCTT
TGGGGAAACGCGAAGAGCACCCCGTCAATGAGGTGGAAAGTCAAATGCTG
GCGGCCCGTTCCCTCAAACACTTGAAAGACGggcatgcctccttcccttc
ttcctcgactCCCGCCtacgcgtcctcctcctttccatcgcgcggtcccc
ccgcctcggagGGTCGTCTCTATGGCCCCATGCACGGCAGCATGAACCCG
AACCTCAGCAGCGGTTATGGGGGCAATTTCCAGTCACACCTGCTGCCGCC
AGGATATCAAAGTTACCCAAGCTACGGGAACATTAGGGAGATGCATAGCT
TAGCCCCGGCCTTCCCACCCTACCACCCCGGTCCGGGCGCTTTCCATATG
CAGCATGTTTATCCGAATAATGCCGGCCTGACCGACGTCCCGTCACCCTT
gccggcgccctcctcctaccctccttttccttccccttcttccgtgGCAG
CTTTGGACGGGCCTGGTAGCATGGTTCGAGATACTTCCATGCCCGGACTA
GGGCTCCGAGATGGGCGGCAAGGGAATTGGGTCGATCCTCACCACCCGCC
CCACCAGCACGCATCGATGCAATTCGTAtcgcaacagcagcagcgagagC
AGCAGCTCCGACACGGACAGGGGCAGCCGTACCACCCACAGCAAGCAACA
CATTTCCATCAAGACGCGCGGCAGCCATGGTGGCAGCAGCATCTGCGGCC
TCCCCACCCGGTACCGCAGGGAACATTGCAGTGCCAACAGCAACAACTCA
TATTTGAACGGCAACAtgagctgcagcagcagcgacaacgacaacagcag
cagccacagctTGGACTGATGTGAATGGGAATGAAGAAGCGCCGAAGGAC
CAAACAGGGCACGAGACGAGGGAGTGCTCTGAGGCCGCCAAAACGGAAAG
TCTTGCATCCGCGGCGGATCAAGAGCTGGATCGTGAAAAAGCTGAGCCCG
ATGAGGCGATGCCACGTCCGAATATACCGAAAGGCGGCACGTCCGAAGGC
ACCCAGCGCCTTGCCAGGGGCCGGGCTTGTCTGGAATGCAAAACCAGTAA
GGTCAAATGCGATAAGGCGCAACCGCGATGCCAGCGATGCGTTCGCCACG
GCTTTCTATGCCTCCCTCAAACtcgaggacagggacggCCGGCAAAATGG
AGGTAAAGAGGggtcgggagaggagggagaggaggcgaaagccTTACTAG
ATTACACATCGGTGGCCGCTTGTCTTCCTGTGTCAAAGTCTATCTCCTCG
TCTTGGGCTGCTATGGATGTCTCATTCTCTTATTTTTCACCGTGCAGGCT
GTACTTGGCCGCCGACGACGCGGTCCAGGACGGCAAAGACGTGCTGGCCA
CGCAGTCGAAAGCATTGCTCCTCTCGTCTTCCCAACTACCGCCTCCGCCG
ACGTCAAACTCTGCCTCTTACGAgcctgccctcccgccctccctccttcc
ctccttcccttcctctttcccgcccaatCCGGCGTCGGTGGGCCCTCTCC
TTCAGCTTTCTTCCGcagccaccacccctcctctctcctccatctcctcg
gctccctccgtctcccctccctactACCCCAACCCTTTGGGGAAACGCGA
AGAGCACCCCGTCAATGAGGTGGAAAGTCAAATGCTGGCGGCCCGTTCCC
TCAAACACTTGAAAGACGggcatgcctccttcccttcttcctcgactCCC
GCCtacgcgtcctcctcctttccatcgcgcggtccccccgcctcggagGG
TCGTCTCTATGGCCCCATGCACGGCAGCATGAACCCGAACCTCAGCAGCG
GTTATGGGGGCAATTTCCAGTCACACCTGCTGCCGCCAGGATATCAAAGT
TACCCAAGCTACGGGAACATTAGGGAGATGCATAGCTTAGCCCCGGCCTT
CCCACCCTACCACCCCGGTCCGGGCGCTTTCCATATGCAGCATGTTTATC
CGAATAATGCCGGCCTGACCGACGTCCCGTCACCCTTgccggcgccctcc
tcctaccctccttttccttccccttcttccgtgGCAGCTTTGGACGGGCC
TGGTAGCATGGTTCGAGATACTTCCATGCCCGGACTAGGGCTCCGAGATG
GGCGGCAAGGGAATTGGGTCGATCCTCACCACCCGCCCCACCAGCACGCA
TCGATGCAATTCGTAtcgcaacagcagcagcgagagCAGCAGCTCCGACA
CGGACAGGGGCAGCCGTACCACCCACAGCAAGCAACACATTTCCATCAAG
ACGCGCGGCAGCCATGGTGGCAGCAGCATCTGCGGCCTCCCCACCCGGTA
CCGCAGGGAACATTGCAGTGCCAACAGCAACAACTCATATTTGAACGGCA
ACAtgagctgcagcagcagcgacaacgacaacagcagcagccacagctTG
GACTGATGTGA

Synonyms

Publications